FFCP PHASE1:Hg19::chr14:22191940..22191964,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12128 | |HGNC=12128 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390425_5end | |association_with_transcript=0bp_to_ENST00000390425_5end | ||
|cluster_id=chr14:22191940..22191964,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_TRAV3_5end | |description=CAGE_peak_2_at_TRAV3_5end | ||
|id=chr14:22191940..22191964,+ | |id=chr14:22191940..22191964,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.01e-28!18;CL:0000789!1.01e-28!18;CL:0002420!1.01e-28!18;CL:0002419!1.01e-28!18;CL:0000790!1.01e-28!18;CL:0000084!7.59e-22!25;CL:0000827!7.59e-22!25;CL:0000625!1.31e-20!11;CL:0000624!9.49e-12!6;CL:0000838!4.44e-11!52;CL:0000542!9.35e-11!53;CL:0000051!9.35e-11!53;CL:0000738!4.72e-08!140;CL:0002087!1.21e-07!119;CL:0000898!5.70e-07!3 | |ontology_enrichment_celltype=CL:0000791!1.01e-28!18;CL:0000789!1.01e-28!18;CL:0002420!1.01e-28!18;CL:0002419!1.01e-28!18;CL:0000790!1.01e-28!18;CL:0000084!7.59e-22!25;CL:0000827!7.59e-22!25;CL:0000625!1.31e-20!11;CL:0000624!9.49e-12!6;CL:0000838!4.44e-11!52;CL:0000542!9.35e-11!53;CL:0000051!9.35e-11!53;CL:0000738!4.72e-08!140;CL:0002087!1.21e-07!119;CL:0000898!5.70e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.04e-47;18!CL:0000789;1.04e-47;18!CL:0002419;1.04e-47;18!CL:0000084;1.61e-37;25!CL:0000625;1.19e-33;11!CL:0000624;1.10e-18;6!CL:0000898;1.26e-10;3!CL:0000542;1.45e-10;53!CL:0000226;3.17e-09;3!CL:0000842;3.17e-09;3!CL:0000815;9.43e-08;2!CL:0000792;9.43e-08;2!CL:0002677;9.43e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.25e-47,18;CL:0000789,1.25e-47,18;CL:0002420,1.25e-47,18;CL:0002419,1.25e-47,18;CL:0000790,1.25e-47,18;CL:0000084,1.89e-37,25;CL:0000827,1.89e-37,25;CL:0000625,1.37e-33,11;CL:0000838,1.79e-19,52;CL:0000542,5.24e-19,53;CL:0000051,5.24e-19,53;CL:0000624,1.15e-18,6;CL:0000898,1.19e-10,3;CL:0002087,2.27e-10,115;CL:0000226,2.62e-09,3;CL:0000842,2.62e-09,3;CL:0000738,1.12e-08,136;CL:0000815,9.28e-08,2;CL:0000792,9.28e-08,2;CL:0002677,9.28e-08,2;CL:0002031,4.45e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;1.04e-47;18!CL:0000051;1.45e-10;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;2.63e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.43e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.60e-15!15;UBERON:0000179!1.60e-15!15;UBERON:0000463!1.60e-15!15;UBERON:0007023!5.06e-11!115 | |ontology_enrichment_uberon=UBERON:0000178!1.60e-15!15;UBERON:0000179!1.60e-15!15;UBERON:0000463!1.60e-15!15;UBERON:0007023!5.06e-11!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.06e-25;15!UBERON:0000179;1.06e-25;15!UBERON:0000463;1.06e-25;15!UBERON:0002390;7.35e-16;32!UBERON:0002193;1.24e-09;42!UBERON:0002370;1.58e-07;2!UBERON:0005058;1.58e-07;2!UBERON:0009113;1.58e-07;2!UBERON:0002346;2.93e-07;4!UBERON:0000923;2.93e-07;4!UBERON:0010316;2.93e-07;4!UBERON:0005291;2.93e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.08e-26,15;UBERON:0000179,8.08e-26,15;UBERON:0000463,8.08e-26,15;UBERON:0002370,6.49e-08,4;UBERON:0005058,6.49e-08,4;UBERON:0009113,6.49e-08,4;UBERON:0003295,6.49e-08,4;UBERON:0005562,6.49e-08,4;UBERON:0004177,2.48e-07,7;UBERON:0005057,2.48e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0,0.154816123316076,0,0,0,0,0,0,0,1.20326668482085,0,0.223915474239924,1.6194683300949,0,0,0,0,0,0.411167888021826,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0.426224750532694,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,3.34406609193516,5.10913991573914,5.14003747498773,13.7092926220356,12.3850461320764,14.203434172042,13.6378709885538,19.6082404117906,11.4896303915187,19.7165166179423,16.789839553431,12.8091319725675,7.1532641157933,12.168404940672,6.90875044464621,17.9677913155733,12.9009309950993,11.2367147797679,6.27213142829861,9.85791281468826,8.81407135284419,9.27794102803101,9.36172860472161,7.00843911513013,8.46408490013344,8.55406840003537,10.0885329782108,10.4949021146623,11.2437653897111,9.47109008176067,14.7803039445788,4.83856183739358,17.918493117495,3.04131248153878,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37921532141349,10.3501235932568,0.641715181398742,0,1.30139853857622,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75566460082641,1.72571360654893,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,2.53723804616085,3.82318603571188,3.41788312304498,3.81170840732462,7.4045209155515,2.59389324477087,3.24018862342869,3.96562588147135,0,0,0,0,0,19.5640069208139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.76283915531148,0,0,0,0,0,0,0,0.197286811273867,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,1.45802306691627,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.398594520940089,0,0,0,0,0,0,0,0,0,0,0,0,0,8.6496268020743,0,5.43144095852881,1.70059936081346,4.21381598480607,2.79322458986622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.351742488719241,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385870790539723,0.437119121007915,0,0,0,0,0,0,0,0.469919589899268,1.4180735354187,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0,1.5870805215462,0,0,0,0.126166424835079,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0.426467963801962,0.23806443146374,13.4344932458893,5.52464957233135,0,0,0,0,0,2.35732185551056,0.286888821570705,0,0,0,0,0,0,0.244482888365733,0,0,3.42165449104745,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0,0.154816123316076,0,0,0,0,0,0,0,1.20326668482085,0,0.223915474239924,1.6194683300949,0,0,0,0,0,0.411167888021826,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0.426224750532694,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,3.34406609193516,5.10913991573914,5.14003747498773,13.7092926220356,12.3850461320764,14.203434172042,13.6378709885538,19.6082404117906,11.4896303915187,19.7165166179423,16.789839553431,12.8091319725675,7.1532641157933,12.168404940672,6.90875044464621,17.9677913155733,12.9009309950993,11.2367147797679,6.27213142829861,9.85791281468826,8.81407135284419,9.27794102803101,9.36172860472161,7.00843911513013,8.46408490013344,8.55406840003537,10.0885329782108,10.4949021146623,11.2437653897111,9.47109008176067,14.7803039445788,4.83856183739358,17.918493117495,3.04131248153878,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37921532141349,10.3501235932568,0.641715181398742,0,1.30139853857622,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75566460082641,1.72571360654893,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,2.53723804616085,3.82318603571188,3.41788312304498,3.81170840732462,7.4045209155515,2.59389324477087,3.24018862342869,3.96562588147135,0,0,0,0,0,19.5640069208139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.76283915531148,0,0,0,0,0,0,0,0.197286811273867,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,1.45802306691627,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.398594520940089,0,0,0,0,0,0,0,0,0,0,0,0,0,8.6496268020743,0,5.43144095852881,1.70059936081346,4.21381598480607,2.79322458986622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.351742488719241,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385870790539723,0.437119121007915,0,0,0,0,0,0,0,0.469919589899268,1.4180735354187,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0,1.5870805215462,0,0,0,0.126166424835079,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0.426467963801962,0.23806443146374,13.4344932458893,5.52464957233135,0,0,0,0,0,2.35732185551056,0.286888821570705,0,0,0,0,0,0,0.244482888365733,0,0,3.42165449104745,0 | ||
|short_description=p2@TRAV3 | |short_description=p2@TRAV3 | ||
}} | }} |
Latest revision as of 03:27, 19 September 2015
Short description: | p2@TRAV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRAV3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000390425_5end |
EntrezGene: | NA |
HGNC: | 12128 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.25e-47 | 18 |
alpha-beta T cell | 1.25e-47 | 18 |
immature T cell | 1.25e-47 | 18 |
mature T cell | 1.25e-47 | 18 |
immature alpha-beta T cell | 1.25e-47 | 18 |
T cell | 1.89e-37 | 25 |
pro-T cell | 1.89e-37 | 25 |
CD8-positive, alpha-beta T cell | 1.37e-33 | 11 |
lymphoid lineage restricted progenitor cell | 1.79e-19 | 52 |
lymphocyte | 5.24e-19 | 53 |
common lymphoid progenitor | 5.24e-19 | 53 |
CD4-positive, alpha-beta T cell | 1.15e-18 | 6 |
naive T cell | 1.19e-10 | 3 |
nongranular leukocyte | 2.27e-10 | 115 |
single nucleate cell | 2.62e-09 | 3 |
mononuclear cell | 2.62e-09 | 3 |
leukocyte | 1.12e-08 | 136 |
regulatory T cell | 9.28e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 9.28e-08 | 2 |
naive regulatory T cell | 9.28e-08 | 2 |
hematopoietic lineage restricted progenitor cell | 4.45e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 8.08e-26 | 15 |
haemolymphatic fluid | 8.08e-26 | 15 |
organism substance | 8.08e-26 | 15 |
thymus | 6.49e-08 | 4 |
hemolymphoid system gland | 6.49e-08 | 4 |
thymic region | 6.49e-08 | 4 |
pharyngeal gland | 6.49e-08 | 4 |
thymus primordium | 6.49e-08 | 4 |
hemopoietic organ | 2.48e-07 | 7 |
immune organ | 2.48e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.43e-07 | 10 |