FFCP PHASE1:Hg19::chr17:57784997..57785081,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:57784997..57785081,+
|short_description=p1@VMP1
|description=CAGE_peak_1_at_VMP1_5end
|association_with_transcript=0bp_to_ENST00000536180,ENST00000537567,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=81671 | |EntrezGene=81671 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29559 | |HGNC=29559 | ||
|TSSclassifier=strong | |||
|UniProt=B4DGZ7,B4DED7,B4DVV9 | |UniProt=B4DGZ7,B4DED7,B4DVV9 | ||
|association_with_transcript=0bp_to_ENST00000536180,ENST00000537567,ENST00000539763_5end | |||
|cluster_id=chr17:57784997..57785081,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_VMP1_5end | |||
|id=chr17:57784997..57785081,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.62e-29!76;CL:0002057!9.11e-26!42;CL:0000557!6.52e-24!71;CL:0000860!1.78e-23!45;CL:0000839!4.47e-23!70;CL:0002009!3.12e-22!65;CL:0002194!3.62e-22!63;CL:0000576!3.62e-22!63;CL:0000040!3.62e-22!63;CL:0000559!3.62e-22!63;CL:0000763!1.23e-11!112;CL:0000049!1.23e-11!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.33e-19;33!CL:0002057;8.33e-19;33!CL:0000473;1.60e-16;39!CL:0000234;1.60e-16;39!CL:0000576;1.27e-15;48!CL:0000766;2.33e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.16e-30,72;CL:0000473,1.67e-26,48;CL:0000234,1.67e-26,48;CL:0000860,9.11e-26,42;CL:0002057,9.11e-26,42;CL:0000557,3.15e-25,67;CL:0000839,2.30e-24,66;CL:0002009,1.42e-23,61;CL:0002194,1.49e-23,59;CL:0000576,1.49e-23,59;CL:0000040,1.49e-23,59;CL:0000559,1.49e-23,59;CL:0000763,5.09e-12,108;CL:0000049,5.09e-12,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.33e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.23e-20!102;UBERON:0003061!1.23e-20!102;UBERON:0002371!4.10e-19!80;UBERON:0002193!6.82e-19!112;UBERON:0001474!1.29e-18!86;UBERON:0004765!1.68e-16!101;UBERON:0001434!1.68e-16!101;UBERON:0002405!1.72e-15!115;UBERON:0002204!3.11e-13!167;UBERON:0000467!5.93e-13!625;UBERON:0000468!6.27e-13!659;UBERON:0000480!1.06e-12!626;UBERON:0000926!5.69e-11!448;UBERON:0004120!5.69e-11!448;UBERON:0006603!5.69e-11!448;UBERON:0003081!3.03e-10!216;UBERON:0000062!1.25e-09!511;UBERON:0000923!4.47e-09!604;UBERON:0005291!4.47e-09!604;UBERON:0006598!4.47e-09!604;UBERON:0002532!4.47e-09!604;UBERON:0002050!5.55e-09!605;UBERON:0005423!5.55e-09!605;UBERON:0000922!1.55e-08!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.12e-21,98;UBERON:0003061,2.12e-21,98;UBERON:0002371,4.93e-20,76;UBERON:0002193,1.60e-19,108;UBERON:0001474,1.91e-19,82;UBERON:0004765,2.94e-19,90;UBERON:0001434,1.28e-16,100;UBERON:0002405,1.03e-15,93;UBERON:0002204,3.34e-13,167;UBERON:0003081,2.62e-12,203;UBERON:0000926,1.08e-09,315;UBERON:0004120,1.08e-09,315;UBERON:0006603,1.08e-09,315;UBERON:0002050,4.73e-09,564;UBERON:0005423,1.07e-08,581;UBERON:0000923,1.30e-08,560;UBERON:0010316,1.30e-08,560;UBERON:0005291,1.30e-08,560;UBERON:0006598,1.30e-08,560;UBERON:0010317,1.30e-08,560;UBERON:0002532,1.30e-08,560;UBERON:0000922,2.64e-08,592 | |||
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|short_description=p1@VMP1 | |||
}} | }} |
Latest revision as of 13:07, 16 September 2015
Short description: | p1@VMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VMP1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000536180, ENST00000537567, ENST00000539763_5end |
EntrezGene: | VMP1 |
HGNC: | 29559 |
UniProt: | B4DGZ7B4DED7B4DVV9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.16e-30 | 72 |
defensive cell | 1.67e-26 | 48 |
phagocyte | 1.67e-26 | 48 |
classical monocyte | 9.11e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.11e-26 | 42 |
granulocyte monocyte progenitor cell | 3.15e-25 | 67 |
myeloid lineage restricted progenitor cell | 2.30e-24 | 66 |
macrophage dendritic cell progenitor | 1.42e-23 | 61 |
monopoietic cell | 1.49e-23 | 59 |
monocyte | 1.49e-23 | 59 |
monoblast | 1.49e-23 | 59 |
promonocyte | 1.49e-23 | 59 |
myeloid cell | 5.09e-12 | 108 |
common myeloid progenitor | 5.09e-12 | 108 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.12e-21 | 98 |
blood island | 2.12e-21 | 98 |
bone marrow | 4.93e-20 | 76 |
hemolymphoid system | 1.60e-19 | 108 |
bone element | 1.91e-19 | 82 |
skeletal element | 2.94e-19 | 90 |
skeletal system | 1.28e-16 | 100 |
immune system | 1.03e-15 | 93 |
musculoskeletal system | 3.34e-13 | 167 |
lateral plate mesoderm | 2.62e-12 | 203 |
mesoderm | 1.08e-09 | 315 |
mesoderm-derived structure | 1.08e-09 | 315 |
presumptive mesoderm | 1.08e-09 | 315 |
embryonic structure | 4.73e-09 | 564 |
developing anatomical structure | 1.07e-08 | 581 |
germ layer | 1.30e-08 | 560 |
germ layer / neural crest | 1.30e-08 | 560 |
embryonic tissue | 1.30e-08 | 560 |
presumptive structure | 1.30e-08 | 560 |
germ layer / neural crest derived structure | 1.30e-08 | 560 |
epiblast (generic) | 1.30e-08 | 560 |
embryo | 2.64e-08 | 592 |