FFCP PHASE1:Hg19::chr17:79828863..79828886,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:79828863..79828886,-
|short_description=p19@ARHGDIA
|description=CAGE_peak_19_at_ARHGDIA_5end
|association_with_transcript=-73bp_to_ENST00000541078,NM_001...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=396 | |EntrezGene=396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=678 | |HGNC=678 | ||
|TSSclassifier=strong | |||
|UniProt=P52565 | |UniProt=P52565 | ||
|association_with_transcript=-73bp_to_ENST00000541078,NM_001185077_5end | |||
|cluster_id=chr17:79828863..79828886,- | |||
|description=CAGE_peak_19_at_ARHGDIA_5end | |||
|id=chr17:79828863..79828886,- | |||
|ontology_enrichment_celltype=CL:0000055!2.11e-30!180;CL:0000548!5.25e-24!679;CL:0000004!5.25e-24!679;CL:0000255!5.25e-24!679;CL:0000012!4.83e-23!682;CL:0002371!1.19e-21!591;CL:0000144!2.24e-21!625;CL:0000222!3.70e-19!119;CL:0000220!1.09e-18!246;CL:0002321!3.48e-18!248;CL:0000183!5.45e-15!59;CL:0000680!1.20e-14!57;CL:0000056!1.20e-14!57;CL:0000355!1.20e-14!57;CL:0000003!1.47e-14!722;CL:0000057!9.28e-14!75;CL:0000187!1.76e-13!54;CL:0000192!2.92e-13!42;CL:0000514!2.92e-13!42;CL:0000393!9.11e-13!60;CL:0000211!9.11e-13!60;CL:0000359!1.22e-09!32;CL:0000071!2.85e-07!18;CL:0002546!2.85e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000192;1.26e-10;43!CL:0000359;6.13e-10;32!CL:0000071;9.63e-09;18!CL:0002494;1.77e-07;16!CL:0002594;9.63e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,6.54e-14,43;CL:0000514,6.54e-14,43;CL:0000222,1.86e-12,121;CL:0000680,2.30e-11,58;CL:0000056,2.30e-11,58;CL:0000355,2.30e-11,58;CL:0000359,5.11e-11,32;CL:0000393,2.02e-10,61;CL:0000211,2.02e-10,61;CL:0000187,2.57e-10,55;CL:0000071,1.48e-08,18;CL:0002546,1.48e-08,18;CL:0000057,1.81e-08,76;CL:0002321,5.38e-08,250;CL:0002494,2.27e-07,16;CL:0000115,3.61e-07,36;CL:0002594,4.97e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000514;1.26e-10;43!CL:0002546;9.63e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!2.66e-16!84;UBERON:0001981!8.44e-16!60;UBERON:0007500!8.44e-16!60;UBERON:0004537!8.44e-16!60;UBERON:0006965!8.44e-16!60;UBERON:0002049!1.26e-15!79;UBERON:0007798!1.26e-15!79;UBERON:0000055!7.04e-14!69;UBERON:0000914!2.34e-13!83;UBERON:0002329!2.34e-13!83;UBERON:0003077!2.34e-13!83;UBERON:0003059!2.34e-13!83;UBERON:0007282!2.34e-13!83;UBERON:0009618!2.34e-13!83;UBERON:0007285!2.34e-13!83;UBERON:0004290!3.16e-13!70;UBERON:0001637!3.48e-13!42;UBERON:0003509!3.48e-13!42;UBERON:0004572!3.48e-13!42;UBERON:0003914!1.14e-12!118;UBERON:0001134!5.79e-12!61;UBERON:0002036!5.79e-12!61;UBERON:0003082!5.79e-12!61;UBERON:0004535!6.09e-11!110;UBERON:0000486!6.90e-11!82;UBERON:0002385!8.47e-11!63;UBERON:0001015!8.47e-11!63;UBERON:0000383!8.47e-11!63;UBERON:0000490!5.55e-10!138;UBERON:0005256!8.75e-10!143;UBERON:0001009!8.78e-10!113;UBERON:0002100!9.42e-10!216;UBERON:0004573!7.27e-09!33;UBERON:0004571!7.27e-09!33;UBERON:0003104!1.55e-08!238;UBERON:0009142!1.55e-08!238;UBERON:0000926!1.20e-07!448;UBERON:0004120!1.20e-07!448;UBERON:0006603!1.20e-07!448;UBERON:0001986!2.85e-07!18;UBERON:0004638!2.85e-07!18;UBERON:0004852!2.85e-07!18;UBERON:0000119!9.42e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0007500;6.21e-12;56!UBERON:0001981;6.21e-12;56!UBERON:0004537;6.21e-12;56!UBERON:0001637;9.92e-12;42!UBERON:0003509;9.92e-12;42!UBERON:0004572;9.92e-12;42!UBERON:0000055;3.43e-09;65!UBERON:0004638;9.63e-09;18!UBERON:0001986;9.63e-09;18!UBERON:0004852;9.63e-09;18!UBERON:0003914;1.75e-08;74!UBERON:0004573;3.43e-08;33!UBERON:0004571;3.43e-08;33!UBERON:0001310;9.63e-07;4 | |||
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| ||
|short_description=p19@ARHGDIA | |||
}} | }} |
Latest revision as of 09:10, 18 September 2015
Short description: | p19@ARHGDIA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_ARHGDIA_5end |
Coexpression cluster: | NA |
Association with transcript: | -73bp_to_ENST00000541078, NM_001185077_5end |
EntrezGene: | ARHGDIA |
HGNC: | 678 |
UniProt: | P52565 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 6.54e-14 | 43 |
smooth muscle myoblast | 6.54e-14 | 43 |
mesodermal cell | 1.86e-12 | 121 |
muscle precursor cell | 2.30e-11 | 58 |
myoblast | 2.30e-11 | 58 |
multi-potent skeletal muscle stem cell | 2.30e-11 | 58 |
vascular associated smooth muscle cell | 5.11e-11 | 32 |
electrically responsive cell | 2.02e-10 | 61 |
electrically active cell | 2.02e-10 | 61 |
muscle cell | 2.57e-10 | 55 |
blood vessel endothelial cell | 1.48e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.48e-08 | 18 |
fibroblast | 1.81e-08 | 76 |
embryonic cell | 5.38e-08 | 250 |
cardiocyte | 2.27e-07 | 16 |
endothelial cell | 3.61e-07 | 36 |
smooth muscle cell of the umbilical artery | 4.97e-07 | 4 |