FFCP PHASE1:Hg19::chr14:22636244..22636259,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-33bp_to_uc001wdi.2_5end | |association_with_transcript=-33bp_to_uc001wdi.2_5end | ||
|cluster_id=chr14:22636244..22636259,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_1_at_uc001wdi.2_5end | |description=CAGE_peak_1_at_uc001wdi.2_5end | ||
|id=chr14:22636244..22636259,+ | |id=chr14:22636244..22636259,+ | ||
|ontology_enrichment_celltype=CL:0000791!2.74e-26!18;CL:0000789!2.74e-26!18;CL:0002420!2.74e-26!18;CL:0002419!2.74e-26!18;CL:0000790!2.74e-26!18;CL:0000084!5.15e-19!25;CL:0000827!5.15e-19!25;CL:0000625!1.31e-16!11;CL:0000838!1.12e-12!52;CL:0000542!2.73e-12!53;CL:0000051!2.73e-12!53;CL:0000624!9.03e-10!6 | |ontology_enrichment_celltype=CL:0000791!2.74e-26!18;CL:0000789!2.74e-26!18;CL:0002420!2.74e-26!18;CL:0002419!2.74e-26!18;CL:0000790!2.74e-26!18;CL:0000084!5.15e-19!25;CL:0000827!5.15e-19!25;CL:0000625!1.31e-16!11;CL:0000838!1.12e-12!52;CL:0000542!2.73e-12!53;CL:0000051!2.73e-12!53;CL:0000624!9.03e-10!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;8.54e-47;18!CL:0000789;8.54e-47;18!CL:0002419;8.54e-47;18!CL:0000084;1.48e-32;25!CL:0000625;2.12e-30;11!CL:0000624;1.24e-14;6!CL:0000898;1.29e-11;3!CL:0000542;2.69e-08;53!CL:0000815;3.09e-08;2!CL:0000792;3.09e-08;2!CL:0002677;3.09e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.04e-47,18;CL:0000789,5.04e-47,18;CL:0002420,5.04e-47,18;CL:0002419,5.04e-47,18;CL:0000790,5.04e-47,18;CL:0000084,1.02e-32,25;CL:0000827,1.02e-32,25;CL:0000625,1.50e-30,11;CL:0000838,1.16e-15,52;CL:0000542,2.74e-15,53;CL:0000051,2.74e-15,53;CL:0000624,1.10e-14,6;CL:0000898,1.16e-11,3;CL:0000893,1.39e-08,2;CL:0002489,1.39e-08,2;CL:0000809,1.39e-08,2;CL:0000808,1.39e-08,2;CL:0000894,1.39e-08,2;CL:0000806,1.39e-08,2;CL:0000807,1.39e-08,2;CL:0000805,1.39e-08,2;CL:0002425,1.39e-08,2;CL:0000815,2.88e-08,2;CL:0000792,2.88e-08,2;CL:0002677,2.88e-08,2;CL:0002087,3.00e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;8.54e-47;18!CL:0002425;1.55e-08;2!CL:0000051;2.69e-08;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.80e-13!15;UBERON:0000179!4.80e-13!15;UBERON:0000463!4.80e-13!15;UBERON:0004177!8.20e-08!7;UBERON:0002370!1.53e-07!4;UBERON:0005058!1.53e-07!4;UBERON:0009113!1.53e-07!4;UBERON:0003295!1.53e-07!4;UBERON:0005562!1.53e-07!4;UBERON:0009722!1.74e-07!11;UBERON:0007690!1.74e-07!11 | |ontology_enrichment_uberon=UBERON:0000178!4.80e-13!15;UBERON:0000179!4.80e-13!15;UBERON:0000463!4.80e-13!15;UBERON:0004177!8.20e-08!7;UBERON:0002370!1.53e-07!4;UBERON:0005058!1.53e-07!4;UBERON:0009113!1.53e-07!4;UBERON:0003295!1.53e-07!4;UBERON:0005562!1.53e-07!4;UBERON:0009722!1.74e-07!11;UBERON:0007690!1.74e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.26e-25;15!UBERON:0000179;7.26e-25;15!UBERON:0000463;7.26e-25;15!UBERON:0002390;1.66e-13;32!UBERON:0002193;7.35e-09;42!UBERON:0002370;2.58e-08;2!UBERON:0005058;2.58e-08;2!UBERON:0009113;2.58e-08;2!UBERON:0006562;1.10e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.93e-25,15;UBERON:0000179,7.93e-25,15;UBERON:0000463,7.93e-25,15;UBERON:0002370,3.02e-15,4;UBERON:0005058,3.02e-15,4;UBERON:0009113,3.02e-15,4;UBERON:0003295,3.02e-15,4;UBERON:0005562,3.02e-15,4;UBERON:0006562,3.07e-11,11;UBERON:0003351,3.59e-10,6;UBERON:0001042,7.53e-09,10;UBERON:0009145,7.53e-09,10;UBERON:0004177,1.02e-08,7;UBERON:0005057,1.02e-08,7 | |||
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| ||
|short_description=p1@uc001wdi.2 | |short_description=p1@uc001wdi.2 | ||
}} | }} |
Latest revision as of 19:09, 24 July 2015
Short description: | p1@uc001wdi.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001wdi.2_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -33bp_to_uc001wdi.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.04e-47 | 18 |
alpha-beta T cell | 5.04e-47 | 18 |
immature T cell | 5.04e-47 | 18 |
mature T cell | 5.04e-47 | 18 |
immature alpha-beta T cell | 5.04e-47 | 18 |
T cell | 1.02e-32 | 25 |
pro-T cell | 1.02e-32 | 25 |
CD8-positive, alpha-beta T cell | 1.50e-30 | 11 |
lymphoid lineage restricted progenitor cell | 1.16e-15 | 52 |
lymphocyte | 2.74e-15 | 53 |
common lymphoid progenitor | 2.74e-15 | 53 |
CD4-positive, alpha-beta T cell | 1.10e-14 | 6 |
naive T cell | 1.16e-11 | 3 |
thymocyte | 1.39e-08 | 2 |
double negative thymocyte | 1.39e-08 | 2 |
double-positive, alpha-beta thymocyte | 1.39e-08 | 2 |
DN4 thymocyte | 1.39e-08 | 2 |
DN1 thymic pro-T cell | 1.39e-08 | 2 |
DN2 thymocyte | 1.39e-08 | 2 |
DN3 thymocyte | 1.39e-08 | 2 |
immature single positive thymocyte | 1.39e-08 | 2 |
early T lineage precursor | 1.39e-08 | 2 |
regulatory T cell | 2.88e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.88e-08 | 2 |
naive regulatory T cell | 2.88e-08 | 2 |
nongranular leukocyte | 3.00e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
blood | 7.93e-25 | 15 |
haemolymphatic fluid | 7.93e-25 | 15 |
organism substance | 7.93e-25 | 15 |
thymus | 3.02e-15 | 4 |
hemolymphoid system gland | 3.02e-15 | 4 |
thymic region | 3.02e-15 | 4 |
pharyngeal gland | 3.02e-15 | 4 |
thymus primordium | 3.02e-15 | 4 |
pharynx | 3.07e-11 | 11 |
pharyngeal epithelium | 3.59e-10 | 6 |
chordate pharynx | 7.53e-09 | 10 |
pharyngeal region of foregut | 7.53e-09 | 10 |
hemopoietic organ | 1.02e-08 | 7 |
immune organ | 1.02e-08 | 7 |