FFCP PHASE1:Hg19::chr2:74781061..74781076,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84695 | |EntrezGene=84695 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13869 | |HGNC=13869 | ||
|TSSclassifier=strong | |||
|UniProt=P58215,Q2EHP2,Q6IPL7 | |UniProt=P58215,Q2EHP2,Q6IPL7 | ||
|association_with_transcript=0bp_to_ENST00000264094,NM_032603,uc002smp.1,uc002smq.1,uc010ffn.1_5end | |association_with_transcript=0bp_to_ENST00000264094,NM_032603,uc002smp.1,uc002smq.1,uc010ffn.1_5end | ||
|cluster_id=chr2:74781061..74781076,- | |||
|coexpression_cluster_id=C4245 | |coexpression_cluster_id=C4245 | ||
|description=CAGE_peak_1_at_LOXL3_5end | |description=CAGE_peak_1_at_LOXL3_5end | ||
|id=chr2:74781061..74781076,- | |id=chr2:74781061..74781076,- | ||
|ontology_enrichment_celltype=CL:0000055!1.32e-48!180;CL:0000057!2.19e-23!75;CL:0000680!1.24e-14!57;CL:0000056!1.24e-14!57;CL:0000355!1.24e-14!57;CL:0000393!2.55e-14!60;CL:0000211!2.55e-14!60;CL:0000183!6.26e-14!59;CL:0000187!1.76e-13!54;CL:0000192!3.64e-11!42;CL:0000514!3.64e-11!42;CL:0000359!7.55e-10!32;CL:0000048!1.12e-08!430;CL:0000034!4.91e-08!444;CL:0002334!6.13e-08!12;CL:0000723!7.98e-08!436;CL:0002620!4.73e-07!23;CL:0002494!4.95e-07!16;CL:0000133!6.41e-07!59;CL:0000327!8.22e-07!14 | |ontology_enrichment_celltype=CL:0000055!1.32e-48!180;CL:0000057!2.19e-23!75;CL:0000680!1.24e-14!57;CL:0000056!1.24e-14!57;CL:0000355!1.24e-14!57;CL:0000393!2.55e-14!60;CL:0000211!2.55e-14!60;CL:0000183!6.26e-14!59;CL:0000187!1.76e-13!54;CL:0000192!3.64e-11!42;CL:0000514!3.64e-11!42;CL:0000359!7.55e-10!32;CL:0000048!1.12e-08!430;CL:0000034!4.91e-08!444;CL:0002334!6.13e-08!12;CL:0000723!7.98e-08!436;CL:0002620!4.73e-07!23;CL:0002494!4.95e-07!16;CL:0000133!6.41e-07!59;CL:0000327!8.22e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000057;4.35e-10;73!CL:0000359;1.04e-09;32!CL:0000192;7.52e-09;43!CL:0002334;8.30e-09;12!CL:0000187;2.34e-08;55!CL:0002320;4.06e-08;188!CL:0000393;4.47e-08;61!CL:0000211;4.47e-08;61!CL:0000327;6.12e-08;15!CL:0000499;2.82e-07;28!CL:0002494;3.57e-07;16!CL:0002620;4.67e-07;23!CL:0000134;4.83e-07;55!CL:0000153;6.92e-07;9!CL:0000447;6.92e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.84e-25,76;CL:0000680,1.27e-15,58;CL:0000056,1.27e-15,58;CL:0000355,1.27e-15,58;CL:0000393,2.66e-15,61;CL:0000211,2.66e-15,61;CL:0000187,2.44e-14,55;CL:0000048,5.25e-13,427;CL:0000034,3.46e-12,441;CL:0000723,6.34e-12,433;CL:0000192,1.02e-11,43;CL:0000514,1.02e-11,43;CL:0000359,6.31e-10,32;CL:0002334,9.38e-09,12;CL:0000327,5.32e-08,15;CL:0000499,2.41e-07,28;CL:0002494,3.56e-07,16;CL:0002620,3.99e-07,23;CL:0000153,8.30e-07,9;CL:0000447,8.30e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000514;7.52e-09;43!CL:0000355;1.51e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.12e-16!83;UBERON:0002329!6.12e-16!83;UBERON:0003077!6.12e-16!83;UBERON:0003059!6.12e-16!83;UBERON:0007282!6.12e-16!83;UBERON:0009618!6.12e-16!83;UBERON:0007285!6.12e-16!83;UBERON:0004290!1.90e-13!70;UBERON:0001134!2.23e-13!61;UBERON:0002036!2.23e-13!61;UBERON:0003082!2.23e-13!61;UBERON:0002385!2.80e-13!63;UBERON:0001015!2.80e-13!63;UBERON:0000383!2.80e-13!63;UBERON:0000486!3.43e-10!82;UBERON:0005256!2.71e-09!143;UBERON:0000475!3.63e-09!365;UBERON:0000948!1.54e-07!24;UBERON:0005498!1.54e-07!24;UBERON:0004140!1.54e-07!24;UBERON:0009881!1.54e-07!24;UBERON:0004141!1.54e-07!24;UBERON:0003084!1.54e-07!24;UBERON:0007005!1.54e-07!24;UBERON:0004139!1.54e-07!24;UBERON:0004291!1.54e-07!24;UBERON:0004872!1.80e-07!84;UBERON:0007100!2.97e-07!27;UBERON:0004573!3.68e-07!33;UBERON:0004571!3.68e-07!33;UBERON:0001637!5.26e-07!42;UBERON:0003509!5.26e-07!42;UBERON:0004572!5.26e-07!42 | |ontology_enrichment_uberon=UBERON:0000914!6.12e-16!83;UBERON:0002329!6.12e-16!83;UBERON:0003077!6.12e-16!83;UBERON:0003059!6.12e-16!83;UBERON:0007282!6.12e-16!83;UBERON:0009618!6.12e-16!83;UBERON:0007285!6.12e-16!83;UBERON:0004290!1.90e-13!70;UBERON:0001134!2.23e-13!61;UBERON:0002036!2.23e-13!61;UBERON:0003082!2.23e-13!61;UBERON:0002385!2.80e-13!63;UBERON:0001015!2.80e-13!63;UBERON:0000383!2.80e-13!63;UBERON:0000486!3.43e-10!82;UBERON:0005256!2.71e-09!143;UBERON:0000475!3.63e-09!365;UBERON:0000948!1.54e-07!24;UBERON:0005498!1.54e-07!24;UBERON:0004140!1.54e-07!24;UBERON:0009881!1.54e-07!24;UBERON:0004141!1.54e-07!24;UBERON:0003084!1.54e-07!24;UBERON:0007005!1.54e-07!24;UBERON:0004139!1.54e-07!24;UBERON:0004291!1.54e-07!24;UBERON:0004872!1.80e-07!84;UBERON:0007100!2.97e-07!27;UBERON:0004573!3.68e-07!33;UBERON:0004571!3.68e-07!33;UBERON:0001637!5.26e-07!42;UBERON:0003509!5.26e-07!42;UBERON:0004572!5.26e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.28e-08;198!UBERON:0004573;7.24e-07;33!UBERON:0004571;7.24e-07;33 | |||
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|phase1_expression=24.163224442984,27.4048670580458,17.3373917038045,16.0117277365009,13.8557939272459,26.1701557230111,12.6649939084155,3.79031924056099,2.61185628199839,0.491467873003018,0,0,0,17.3272894144065,35.1281218271591,2.01697543935533,1.20538905604795,1.46062018077475,0.975865597581014,6.89477925230012,24.2760822580661,11.5978246946892,7.15589967827642,5.47497700291537,10.6711243655582,0.382067028739756,0.246301768349837,0.0787107813136792,0,0,0,0,0,0,0,0,0,1.10799081706375,0.200544447470142,0,0.671746422719773,0.647787332037959,0,0,0,0.242584061187816,0,0.411167888021826,0,0,0,0,0,0.645484683583826,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,2.43806866313962,14.75541891348,11.2519054422307,82.4081267436811,55.6485080805837,127.754629723447,27.8350081467885,187.841059936817,3.11964896641424,6.87361132133948,4.21606971327005,1.76821751921912,0,0,0.649094787309367,1.39303789839414,1.32957960518865,0,0,0,0,0.860234595106124,0,0,0,0.275118041940067,0.208994966536811,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,3.87780264148325,0,36.7759244254536,20.6407734013265,26.8790637050834,45.3201860783126,9.57604631935564,26.9125248068307,19.2148192313469,49.5801772318491,0.933633106199299,3.77189881795127,2.12500474047496,7.56787138224657,12.09969441408,1.87457145467037,0.624320153660641,0,2.69007624993242,0.704606991862589,5.34180716414834,3.79217178096071,12.4534044465485,19.4078221352593,12.1924421787403,30.8880742893334,48.2170512093186,1.82032272387605,2.87447256726495,9.76349460933584,7.50711119231785,6.09541054065202,22.3878586649227,73.2505831959657,54.9871295598144,6.69249880644124,39.8244991229274,18.5794928272154,8.05341224406335,26.4080164554274,14.2212490349046,30.6592242654299,10.6086608109006,3.20675031258406,1.85130309806277,16.1557615516233,10.9539379384336,6.46584227275248,47.5712853972263,11.485739197951,11.0214385001817,0,0,0,1.82960559194393,2.51806559810822,4.06678800043314,6.94529068602982,2.52320850875628,1.82488679537915,4.69348596989448,9.64861407289328,1.38134921352481,2.78620756819187,2.16563844500876,0,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,5.60967095213783,1.6462960453256,7.3504355692771,0,0.982827216677626,0,0,0,1.02940686179115,0.109750285408626,0,0,0,0.977424915930974,11.4392826380754,4.3299402607582,5.21686822387846,5.63561732331944,0,0.462985512576611,0,0,0,0.984868024349589,1.63802985597466,1.33768046059855,0,0.16798212819886,0,0,0,0,0,0.088048434013226,0.207328115540772,0.144119953416961,0.12624243342638,0.380987365753014,1.52795370223311,3.51652341630141,3.4214489204541,3.496134751913,4.80548892550268,2.00078502841405,3.92458795208763,3.92364061949952,6.23375429478075,2.84397774667111,10.7296933755565,5.071816515336,1.86156681609409,2.08014873822732,5.40135485950498,14.1849132023278,8.79193190753128,7.00592168924923,18.4491345833091,5.76268235746538,3.25736184293735,9.24019066730619,7.12756685640086,7.83742380354924,3.48613383440118,8.39773125929279,0,0,0,55.8325913295388,34.4585807502342,4.27910715122155,17.8081007201122,8.01357657946495,8.95304816199478,0,0,0,0,1.77866236955724,0,3.09315525111078,2.51274398001523,5.74144876487847,0,0,0.414415513436035,16.4406598903647,32.511083868879,21.9724669196786,38.8905511062609,56.9188474262946,21.4475284446151,31.042474973069,12.9406822882919,22.7407504055985,6.2083842775503,10.627609576567,16.2244868316699,22.6766233761696,17.2305018567212,12.6963066810017,0,0,0,0,0,0.907170879989041,23.8183495506026,39.4397271350321,27.5046892544412,22.296211970492,7.16390148693385,22.0369871966742,31.1677939534481,30.3793096791231,24.1483946425853,15.2756510185685,24.4049581716302,22.3123926643122,0,0,0,4.70739237474888,18.5732991366851,12.981317080983,0,0.924184045252977,0,1.46139224653261,1.26661954671451,0,0,4.31831832204279,0,2.16757150035082,5.51858751240339,0,0,3.58199607555485,0,0.261435451024901,0.256450125116389,2.95213181129735,2.60302715731442,1.44257416306811,1.46511143709349,1.32015199872941,0,0,33.7436252672735,6.28359668898793,1.07834031980251,2.30255512089194,5.23778975441216,6.33779444722814,5.075584286998,2.47157219506693,4.62966585363034,0,0,0,0,6.04299214086472,138.517432605482,4.1822236209636,11.3972424665153,21.2922412126809,13.0489948811261,7.78361720236464,28.0524778014303,5.58237554039501,4.11293252134344,2.09693213316207,7.16513815671735,5.13526785640705,4.45484547096312,15.6989728039846,4.13706652441624,2.47083326762449,3.18093486333353,21.6335255283448,12.6808256938407,25.6967658305778,1.46290121726877,72.870333399754,17.9605249486484,5.59649636772742,3.67654123079653,7.910568163417,15.4382296192915,35.8257046630259,36.3914234760623,2.89387767133344,3.27947376023316,2.43492452355245,0.92947049429925,7.88747687090276,1.29070216983646,4.02821068153797,2.1400263088875,2.838088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| ||
|short_description=p1@LOXL3 | |short_description=p1@LOXL3 | ||
}} | }} |
Latest revision as of 12:04, 18 September 2015
Short description: | p1@LOXL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOXL3_5end |
Coexpression cluster: | C4245_Smooth_extraskeletal_Chondrocyte_rhabdomyosarcoma_Multipotent_Fibroblast_spindle |
Association with transcript: | 0bp_to_ENST00000264094, NM_032603, uc002smp.1, uc002smq.1, uc010ffn.1_5end |
EntrezGene: | LOXL3 |
HGNC: | 13869 |
UniProt: | P58215Q2EHP2Q6IPL7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.84e-25 | 76 |
muscle precursor cell | 1.27e-15 | 58 |
myoblast | 1.27e-15 | 58 |
multi-potent skeletal muscle stem cell | 1.27e-15 | 58 |
electrically responsive cell | 2.66e-15 | 61 |
electrically active cell | 2.66e-15 | 61 |
muscle cell | 2.44e-14 | 55 |
multi fate stem cell | 5.25e-13 | 427 |
stem cell | 3.46e-12 | 441 |
somatic stem cell | 6.34e-12 | 433 |
smooth muscle cell | 1.02e-11 | 43 |
smooth muscle myoblast | 1.02e-11 | 43 |
vascular associated smooth muscle cell | 6.31e-10 | 32 |
preadipocyte | 9.38e-09 | 12 |
extracellular matrix secreting cell | 5.32e-08 | 15 |
stromal cell | 2.41e-07 | 28 |
cardiocyte | 3.56e-07 | 16 |
skin fibroblast | 3.99e-07 | 23 |
GAG secreting cell | 8.30e-07 | 9 |
carbohydrate secreting cell | 8.30e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.08e-14 | 73 |
skeletal muscle tissue | 3.46e-14 | 62 |
striated muscle tissue | 3.46e-14 | 62 |
myotome | 3.46e-14 | 62 |
paraxial mesoderm | 7.15e-14 | 72 |
presumptive paraxial mesoderm | 7.15e-14 | 72 |
somite | 8.70e-14 | 71 |
presomitic mesoderm | 8.70e-14 | 71 |
presumptive segmental plate | 8.70e-14 | 71 |
dermomyotome | 8.70e-14 | 71 |
trunk paraxial mesoderm | 8.70e-14 | 71 |
muscle tissue | 9.82e-14 | 64 |
musculature | 9.82e-14 | 64 |
musculature of body | 9.82e-14 | 64 |
epithelial vesicle | 1.70e-12 | 78 |
multilaminar epithelium | 1.13e-10 | 83 |
mesenchyme | 7.90e-10 | 160 |
entire embryonic mesenchyme | 7.90e-10 | 160 |
trunk mesenchyme | 2.51e-08 | 122 |
systemic artery | 9.09e-08 | 33 |
systemic arterial system | 9.09e-08 | 33 |
heart | 5.02e-07 | 24 |
primitive heart tube | 5.02e-07 | 24 |
primary heart field | 5.02e-07 | 24 |
anterior lateral plate mesoderm | 5.02e-07 | 24 |
heart tube | 5.02e-07 | 24 |
heart primordium | 5.02e-07 | 24 |
cardiac mesoderm | 5.02e-07 | 24 |
cardiogenic plate | 5.02e-07 | 24 |
heart rudiment | 5.02e-07 | 24 |
artery | 5.44e-07 | 42 |
arterial blood vessel | 5.44e-07 | 42 |
arterial system | 5.44e-07 | 42 |