FFCP PHASE1:Hg19::chr3:164913920..164913931,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22865 | |EntrezGene=22865 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23501 | |HGNC=23501 | ||
|TSSclassifier=strong | |||
|UniProt=O94933 | |UniProt=O94933 | ||
|association_with_transcript=-130bp_to_ENST00000475390,uc003fej.3_5end | |association_with_transcript=-130bp_to_ENST00000475390,uc003fej.3_5end | ||
|cluster_id=chr3:164913920..164913931,- | |||
|coexpression_cluster_id=C1782 | |coexpression_cluster_id=C1782 | ||
|description=CAGE_peak_11_at_SLITRK3_5end | |description=CAGE_peak_11_at_SLITRK3_5end | ||
|id=chr3:164913920..164913931,- | |id=chr3:164913920..164913931,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.72e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.84e-66!57;UBERON:0005068!2.84e-66!57;UBERON:0006241!2.84e-66!57;UBERON:0007135!2.84e-66!57;UBERON:0001893!3.55e-58!34;UBERON:0001017!2.07e-56!82;UBERON:0002791!2.67e-55!33;UBERON:0002780!1.40e-54!41;UBERON:0001890!1.40e-54!41;UBERON:0006240!1.40e-54!41;UBERON:0002616!1.84e-53!59;UBERON:0002020!2.49e-53!34;UBERON:0003528!2.49e-53!34;UBERON:0005743!2.51e-53!86;UBERON:0001869!3.17e-53!32;UBERON:0003080!4.06e-53!42;UBERON:0000955!6.69e-53!69;UBERON:0006238!6.69e-53!69;UBERON:0002346!3.20e-48!90;UBERON:0000073!2.54e-47!94;UBERON:0001016!2.54e-47!94;UBERON:0002619!8.17e-45!22;UBERON:0007023!5.13e-44!115;UBERON:0003075!4.30e-43!86;UBERON:0007284!4.30e-43!86;UBERON:0001950!1.65e-39!20;UBERON:0000956!5.07e-39!25;UBERON:0000203!5.07e-39!25;UBERON:0003056!2.55e-34!61;UBERON:0000033!2.85e-27!123;UBERON:0000924!1.94e-26!173;UBERON:0006601!1.94e-26!173;UBERON:0000153!1.51e-25!129;UBERON:0007811!1.51e-25!129;UBERON:0004121!4.55e-23!169;UBERON:0000200!1.74e-18!6;UBERON:0002021!5.43e-16!5;UBERON:0002420!6.68e-16!9;UBERON:0007245!6.68e-16!9;UBERON:0010009!6.68e-16!9;UBERON:0010011!6.68e-16!9;UBERON:0000454!6.68e-16!9;UBERON:0002308!1.77e-15!9;UBERON:0000125!1.77e-15!9;UBERON:0009663!3.08e-15!7;UBERON:0000025!1.34e-14!194;UBERON:0003076!6.15e-14!15;UBERON:0003057!6.15e-14!15;UBERON:0000369!8.53e-13!4;UBERON:0002435!8.53e-13!4;UBERON:0000204!8.53e-13!4;UBERON:0010082!8.53e-13!4;UBERON:0004111!3.27e-12!241;UBERON:0001872!1.54e-10!5;UBERON:0000349!2.50e-10!5;UBERON:0005383!7.86e-10!3;UBERON:0005382!7.86e-10!3;UBERON:0002771!1.56e-09!3;UBERON:0001871!2.22e-09!7;UBERON:0002240!2.89e-09!3;UBERON:0000477!1.06e-08!286;UBERON:0002298!1.24e-08!8;UBERON:0000064!3.56e-08!219;UBERON:0004733!4.48e-08!12;UBERON:0002028!4.48e-08!12;UBERON:0007277!4.48e-08!12;UBERON:0000475!6.32e-08!365;UBERON:0000483!7.44e-08!309;UBERON:0000119!1.10e-07!312;UBERON:0001873!1.74e-07!2;UBERON:0010122!1.74e-07!2;UBERON:0001870!1.79e-07!2;UBERON:0004732!2.11e-07!13;UBERON:0001954!4.66e-07!2;UBERON:0003022!4.66e-07!2;UBERON:0002421!4.66e-07!2;UBERON:0002600!4.66e-07!2;UBERON:0000922!4.69e-07!612 | |ontology_enrichment_uberon=UBERON:0001049!2.84e-66!57;UBERON:0005068!2.84e-66!57;UBERON:0006241!2.84e-66!57;UBERON:0007135!2.84e-66!57;UBERON:0001893!3.55e-58!34;UBERON:0001017!2.07e-56!82;UBERON:0002791!2.67e-55!33;UBERON:0002780!1.40e-54!41;UBERON:0001890!1.40e-54!41;UBERON:0006240!1.40e-54!41;UBERON:0002616!1.84e-53!59;UBERON:0002020!2.49e-53!34;UBERON:0003528!2.49e-53!34;UBERON:0005743!2.51e-53!86;UBERON:0001869!3.17e-53!32;UBERON:0003080!4.06e-53!42;UBERON:0000955!6.69e-53!69;UBERON:0006238!6.69e-53!69;UBERON:0002346!3.20e-48!90;UBERON:0000073!2.54e-47!94;UBERON:0001016!2.54e-47!94;UBERON:0002619!8.17e-45!22;UBERON:0007023!5.13e-44!115;UBERON:0003075!4.30e-43!86;UBERON:0007284!4.30e-43!86;UBERON:0001950!1.65e-39!20;UBERON:0000956!5.07e-39!25;UBERON:0000203!5.07e-39!25;UBERON:0003056!2.55e-34!61;UBERON:0000033!2.85e-27!123;UBERON:0000924!1.94e-26!173;UBERON:0006601!1.94e-26!173;UBERON:0000153!1.51e-25!129;UBERON:0007811!1.51e-25!129;UBERON:0004121!4.55e-23!169;UBERON:0000200!1.74e-18!6;UBERON:0002021!5.43e-16!5;UBERON:0002420!6.68e-16!9;UBERON:0007245!6.68e-16!9;UBERON:0010009!6.68e-16!9;UBERON:0010011!6.68e-16!9;UBERON:0000454!6.68e-16!9;UBERON:0002308!1.77e-15!9;UBERON:0000125!1.77e-15!9;UBERON:0009663!3.08e-15!7;UBERON:0000025!1.34e-14!194;UBERON:0003076!6.15e-14!15;UBERON:0003057!6.15e-14!15;UBERON:0000369!8.53e-13!4;UBERON:0002435!8.53e-13!4;UBERON:0000204!8.53e-13!4;UBERON:0010082!8.53e-13!4;UBERON:0004111!3.27e-12!241;UBERON:0001872!1.54e-10!5;UBERON:0000349!2.50e-10!5;UBERON:0005383!7.86e-10!3;UBERON:0005382!7.86e-10!3;UBERON:0002771!1.56e-09!3;UBERON:0001871!2.22e-09!7;UBERON:0002240!2.89e-09!3;UBERON:0000477!1.06e-08!286;UBERON:0002298!1.24e-08!8;UBERON:0000064!3.56e-08!219;UBERON:0004733!4.48e-08!12;UBERON:0002028!4.48e-08!12;UBERON:0007277!4.48e-08!12;UBERON:0000475!6.32e-08!365;UBERON:0000483!7.44e-08!309;UBERON:0000119!1.10e-07!312;UBERON:0001873!1.74e-07!2;UBERON:0010122!1.74e-07!2;UBERON:0001870!1.79e-07!2;UBERON:0004732!2.11e-07!13;UBERON:0001954!4.66e-07!2;UBERON:0003022!4.66e-07!2;UBERON:0002421!4.66e-07!2;UBERON:0002600!4.66e-07!2;UBERON:0000922!4.69e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.75e-23;32!UBERON:0001893;1.61e-22;34!UBERON:0001950;1.87e-21;20!UBERON:0002619;1.32e-19;22!UBERON:0002581;2.71e-19;1!UBERON:0002902;2.71e-19;1!UBERON:0001882;2.71e-19;1!UBERON:0002022;2.71e-19;1!UBERON:0009899;2.71e-19;1!UBERON:0007190;2.71e-19;1!UBERON:0005403;2.71e-19;1!UBERON:0000956;2.30e-17;25!UBERON:0000203;2.30e-17;25!UBERON:0002791;1.41e-16;32!UBERON:0003528;6.06e-16;34!UBERON:0002020;6.06e-16;34!UBERON:0002780;2.14e-15;41!UBERON:0001890;2.14e-15;41!UBERON:0001872;2.33e-15;5!UBERON:0002021;2.33e-15;5!UBERON:0000200;5.76e-13;6!UBERON:0000073;1.93e-11;53!UBERON:0002616;1.93e-11;53!UBERON:0000955;3.05e-10;68!UBERON:0001017;9.66e-10;75!UBERON:0001016;1.16e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,2.79e-26,32;UBERON:0001893,9.03e-25,34;UBERON:0001950,1.58e-21,20;UBERON:0002780,1.30e-20,41;UBERON:0001890,1.30e-20,41;UBERON:0003080,1.30e-20,41;UBERON:0006240,1.30e-20,41;UBERON:0002619,1.13e-19,22;UBERON:0002791,1.87e-19,32;UBERON:0002581,1.88e-19,1;UBERON:0002022,2.25e-19,1;UBERON:0007190,3.25e-19,1;UBERON:0002902,4.69e-19,1;UBERON:0009899,4.69e-19,1;UBERON:0001882,5.62e-19,1;UBERON:0005403,5.62e-19,1;UBERON:0003528,2.42e-18,34;UBERON:0002020,2.42e-18,34;UBERON:0000956,2.00e-17,25;UBERON:0000203,2.00e-17,25;UBERON:0000955,5.18e-16,68;UBERON:0006238,5.18e-16,68;UBERON:0000073,5.57e-16,53;UBERON:0002616,5.57e-16,53;UBERON:0001872,2.02e-15,5;UBERON:0002021,2.17e-15,5;UBERON:0001049,3.99e-15,56;UBERON:0005068,3.99e-15,56;UBERON:0006241,3.99e-15,56;UBERON:0007135,3.99e-15,56;UBERON:0003056,6.96e-14,61;UBERON:0001017,1.95e-13,81;UBERON:0000200,5.42e-13,6;UBERON:0002346,8.92e-13,86;UBERON:0001016,4.47e-12,89;UBERON:0003075,2.73e-10,82;UBERON:0007284,2.73e-10,82;UBERON:0010371,4.70e-08,104;UBERON:0004121,8.47e-08,171;UBERON:0000924,8.47e-08,171;UBERON:0006601,8.47e-08,171;UBERON:0007023,2.24e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.844016498463076,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,0.74214478529481,0,0,0,0,0,0,0,0,2.62444152044929,0,0.885741385813839,0.844175070377856,0,0.774054819518572,0,0.219385397153973,0,0,1.07730361905316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0.451961481561065,0,0,0.823040347426423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.408610218334727,0,0,0,0,0,1.15424157650247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471162288750703,0.886068179966986,0.732157589411779,0.500763722825999,0,0.110929051536852,0.620964029413834,3.87376177821446,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0.123935764259002,0,0,0,0.80057074828547,0,0,1.02766760154335,1.41696576325585,0.638535436228605,0.82046545696302,0.504143392443436,1.03735878696327,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,1.08060135389431,0,0.620060389503552,0.570742291745161,1.09394961803644,0,0,1.40696995487696,0,0,0,0,0,0,0,0,0.339848664884159,1.31545547125698,0,0,0.078493092850514,0.157115589916002,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0.392616934229891,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.815897882290976,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.855690109280065,0.406896178315738,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.844016498463076,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,0.74214478529481,0,0,0,0,0,0,0,0,2.62444152044929,0,0.885741385813839,0.844175070377856,0,0.774054819518572,0,0.219385397153973,0,0,1.07730361905316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0.451961481561065,0,0,0.823040347426423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0.408610218334727,0,0,0,0,0,1.15424157650247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471162288750703,0.886068179966986,0.732157589411779,0.500763722825999,0,0.110929051536852,0.620964029413834,3.87376177821446,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0.123935764259002,0,0,0,0.80057074828547,0,0,1.02766760154335,1.41696576325585,0.638535436228605,0.82046545696302,0.504143392443436,1.03735878696327,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,1.08060135389431,0,0.620060389503552,0.570742291745161,1.09394961803644,0,0,1.40696995487696,0,0,0,0,0,0,0,0,0.339848664884159,1.31545547125698,0,0,0.078493092850514,0.157115589916002,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0.392616934229891,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.815897882290976,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.855690109280065,0.406896178315738,0.665756774185513,0,0 | ||
|short_description=p11@SLITRK3 | |short_description=p11@SLITRK3 | ||
}} | }} |
Latest revision as of 12:38, 16 September 2015
Short description: | p11@SLITRK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SLITRK3_5end |
Coexpression cluster: | C1782_medulloblastoma_putamen_caudate_brain_nucleus_occipital_medial |
Association with transcript: | -130bp_to_ENST00000475390, uc003fej.3_5end |
EntrezGene: | SLITRK3 |
HGNC: | 23501 |
UniProt: | O94933 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data