FF:12171-128I2: Difference between revisions

Latest revision as of 18:32, 4 June 2020

Name:	CD8+ T Cells (pluriselect), donor090325, donation2
Species:	Human (Homo sapiens)
Library ID:	CNhs12199
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	NA
cell type	T cell, CD8+
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005774

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12199		CAGE		DRX008068		DRR008940

Accession ID Hg19

Library id		BAM		CTSS
CNhs12199		DRZ000365		DRZ001750

Accession ID Hg38

Library id		BAM		CTSS
CNhs12199		DRZ011715		DRZ013100

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.18
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.157
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.252
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0523
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0518
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.352
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.387
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.83
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.503
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0523
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.296
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0523
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.443
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.099
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.426
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.289
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.605
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.247
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.00811
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.073
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.278
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.216
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.636
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0756
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.559
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.141
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.141
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.14
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.141
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.332
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.945
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0186
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.0262
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.822
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12199

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.1957e-10
MA0003.1	MA0003.1	0.572
MA0004.1	MA0004.1	0.85
MA0006.1	MA0006.1	0.284
MA0007.1	MA0007.1	0.774
MA0009.1	MA0009.1	0.136
MA0014.1	MA0014.1	0.841
MA0017.1	MA0017.1	0.0221
MA0018.2	MA0018.2	0.547
MA0019.1	MA0019.1	0.383
MA0024.1	MA0024.1	0.32
MA0025.1	MA0025.1	0.576
MA0027.1	MA0027.1	0.997
MA0028.1	MA0028.1	1.16797e-7
MA0029.1	MA0029.1	0.798
MA0030.1	MA0030.1	0.177
MA0031.1	MA0031.1	0.00828
MA0035.2	MA0035.2	0.0993
MA0038.1	MA0038.1	0.0811
MA0039.2	MA0039.2	0.759
MA0040.1	MA0040.1	0.44
MA0041.1	MA0041.1	0.11
MA0042.1	MA0042.1	0.197
MA0043.1	MA0043.1	0.158
MA0046.1	MA0046.1	0.749
MA0047.2	MA0047.2	0.0833
MA0048.1	MA0048.1	0.193
MA0050.1	MA0050.1	2.59366e-9
MA0051.1	MA0051.1	1.04924e-4
MA0052.1	MA0052.1	0.0102
MA0055.1	MA0055.1	0.552
MA0057.1	MA0057.1	0.725
MA0058.1	MA0058.1	0.587
MA0059.1	MA0059.1	0.555
MA0060.1	MA0060.1	0.12
MA0061.1	MA0061.1	0.00277
MA0062.2	MA0062.2	6.92447e-26
MA0065.2	MA0065.2	0.0405
MA0066.1	MA0066.1	0.269
MA0067.1	MA0067.1	0.986
MA0068.1	MA0068.1	0.827
MA0069.1	MA0069.1	0.869
MA0070.1	MA0070.1	0.569
MA0071.1	MA0071.1	0.581
MA0072.1	MA0072.1	0.227
MA0073.1	MA0073.1	0.843
MA0074.1	MA0074.1	0.564
MA0076.1	MA0076.1	1.58655e-12
MA0077.1	MA0077.1	0.0286
MA0078.1	MA0078.1	0.773
MA0079.2	MA0079.2	0.678
MA0080.2	MA0080.2	5.59758e-14
MA0081.1	MA0081.1	0.00606
MA0083.1	MA0083.1	0.0123
MA0084.1	MA0084.1	0.636
MA0087.1	MA0087.1	0.757
MA0088.1	MA0088.1	0.038
MA0090.1	MA0090.1	2.46521e-4
MA0091.1	MA0091.1	0.868
MA0092.1	MA0092.1	0.821
MA0093.1	MA0093.1	0.873
MA0099.2	MA0099.2	0.00923
MA0100.1	MA0100.1	0.345
MA0101.1	MA0101.1	0.564
MA0102.2	MA0102.2	0.505
MA0103.1	MA0103.1	0.108
MA0104.2	MA0104.2	0.152
MA0105.1	MA0105.1	5.6878e-5
MA0106.1	MA0106.1	0.128
MA0107.1	MA0107.1	0.668
MA0108.2	MA0108.2	7.99161e-13
MA0111.1	MA0111.1	0.265
MA0112.2	MA0112.2	0.366
MA0113.1	MA0113.1	0.467
MA0114.1	MA0114.1	0.24
MA0115.1	MA0115.1	0.762
MA0116.1	MA0116.1	3.26428e-5
MA0117.1	MA0117.1	0.722
MA0119.1	MA0119.1	0.3
MA0122.1	MA0122.1	0.2
MA0124.1	MA0124.1	0.375
MA0125.1	MA0125.1	0.656
MA0131.1	MA0131.1	0.551
MA0135.1	MA0135.1	0.903
MA0136.1	MA0136.1	1.24155e-27
MA0137.2	MA0137.2	0.00779
MA0138.2	MA0138.2	0.887
MA0139.1	MA0139.1	0.00472
MA0140.1	MA0140.1	0.162
MA0141.1	MA0141.1	0.881
MA0142.1	MA0142.1	0.458
MA0143.1	MA0143.1	0.309
MA0144.1	MA0144.1	0.087
MA0145.1	MA0145.1	0.804
MA0146.1	MA0146.1	0.373
MA0147.1	MA0147.1	0.187
MA0148.1	MA0148.1	0.271
MA0149.1	MA0149.1	0.311
MA0150.1	MA0150.1	0.182
MA0152.1	MA0152.1	0.0164
MA0153.1	MA0153.1	0.681
MA0154.1	MA0154.1	0.0083
MA0155.1	MA0155.1	0.736
MA0156.1	MA0156.1	1.27011e-29
MA0157.1	MA0157.1	0.00884
MA0159.1	MA0159.1	0.0733
MA0160.1	MA0160.1	0.448
MA0162.1	MA0162.1	0.783
MA0163.1	MA0163.1	1.13747e-9
MA0164.1	MA0164.1	0.582
MA0258.1	MA0258.1	0.457
MA0259.1	MA0259.1	0.416

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12199

Novel motif	Logo	P-value
1	1	0.327
10	10	0.0249
100	100	0.563
101	101	0.364
102	102	0.632
103	103	0.0609
104	104	0.616
105	105	0.0941
106	106	0.574
107	107	0.0407
108	108	0.6
109	109	0.0863
11	11	0.124
110	110	0.519
111	111	0.308
112	112	0.422
113	113	0.254
114	114	0.333
115	115	0.214
116	116	0.483
117	117	0.00594
118	118	0.524
119	119	0.798
12	12	0.612
120	120	0.287
121	121	0.883
122	122	0.338
123	123	0.463
124	124	0.114
125	125	0.817
126	126	0.179
127	127	0.309
128	128	0.65
129	129	0.176
13	13	0.714
130	130	0.703
131	131	0.591
132	132	0.705
133	133	0.688
134	134	0.654
135	135	0.352
136	136	0.937
137	137	0.0884
138	138	0.223
139	139	0.0594
14	14	0.4
140	140	0.321
141	141	0.987
142	142	0.5
143	143	2.34936e-4
144	144	0.748
145	145	0.572
146	146	0.193
147	147	0.0113
148	148	0.182
149	149	0.888
15	15	0.0945
150	150	0.905
151	151	0.486
152	152	0.2
153	153	0.688
154	154	0.8
155	155	0.0599
156	156	0.739
157	157	0.373
158	158	0.245
159	159	0.13
16	16	0.949
160	160	0.906
161	161	0.255
162	162	0.119
163	163	0.758
164	164	0.429
165	165	0.456
166	166	0.638
167	167	0.515
168	168	0.0489
169	169	0.981
17	17	0.828
18	18	0.734
19	19	0.29
2	2	0.535
20	20	0.879
21	21	0.599
22	22	0.876
23	23	0.577
24	24	0.682
25	25	0.0315
26	26	0.914
27	27	0.0143
28	28	0.34
29	29	0.103
3	3	0.0533
30	30	0.726
31	31	0.838
32	32	0.0856
33	33	0.445
34	34	0.718
35	35	0.116
36	36	0.0727
37	37	0.239
38	38	0.574
39	39	0.366
4	4	0.684
40	40	0.746
41	41	0.103
42	42	0.0586
43	43	0.304
44	44	0.541
45	45	0.91
46	46	0.208
47	47	0.0996
48	48	0.19
49	49	0.207
5	5	0.142
50	50	0.465
51	51	0.569
52	52	0.186
53	53	0.31
54	54	0.629
55	55	0.298
56	56	0.598
57	57	0.84
58	58	0.0404
59	59	0.245
6	6	0.692
60	60	0.453
61	61	0.0948
62	62	0.0266
63	63	0.943
64	64	0.264
65	65	0.932
66	66	0.852
67	67	0.845
68	68	0.596
69	69	0.649
7	7	0.192
70	70	0.0402
71	71	0.17
72	72	0.0427
73	73	0.919
74	74	0.321
75	75	0.0307
76	76	0.248
77	77	0.557
78	78	0.133
79	79	0.24
8	8	0.706
80	80	0.00121
81	81	0.418
82	82	0.0663
83	83	0.731
84	84	0.661
85	85	0.592
86	86	0.182
87	87	0.728
88	88	0.625
89	89	0.889
9	9	0.392
90	90	0.0409
91	91	0.966
92	92	0.449
93	93	0.189
94	94	0.108
95	95	0.0178
96	96	0.123
97	97	0.438
98	98	0.207
99	99	0.051

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12199

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005774
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000542,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002420,CL:0002419,CL:0000790,CL:0000838,CL:0002031,CL:0000827,CL:0000037,CL:0000566,CL:0000625,CL:0000837,CL:0000051
+|accession_numbers=CAGE;DRX008068;DRR008940;DRZ000365;DRZ001750;DRZ011715;DRZ013100
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000030
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.13!133.23!TCF7;;chr4:109087445..109087463,-!p1@LEF1!2.07!116.60!LEF1;;chr17:45810594..45810608,+!p1@TBX21!1.93!84.34!TBX21;;chr2:68592406..68592424,+!p1@PLEK!1.92!83.06!PLEK;;chr2:192015701..192015743,-!p1@STAT4!1.89!102.52!STAT4;;chr3:63953435..63953499,+!p1@ATXN7!1.83!66.68!ATXN7;;chr7:50343634..50343717,+!p2@IKZF1!1.80!61.43!IKZF1;;chr2:192015750..192015793,-!p2@STAT4!1.77!76.54!STAT4;;chr5:133450365..133450444,+!p1@TCF7!1.76!244.45!TCF7;;chr2:231090433..231090469,+!p1@SP140!1.75!55.29!SP140;;chr3:27763807..27763822,-!p1@EOMES!1.72!51.45!EOMES;;chrY:21906594..21906622,-!p1@KDM5D!1.66!44.54!KDM5D;;chr9:117150254..117150271,-!p1@AKNA!1.59!101.37!AKNA;;chr6:106546808..106546833,+!p3@PRDM1!1.59!46.84!PRDM1;;chr17:37934365..37934387,-!p2@IKZF3!1.57!36.35!IKZF3;;chr1:25256756..25256774,-!p1@RUNX3!1.55!63.99!RUNX3;;chr5:133451347..133451358,+!p3@TCF7!1.52!32.12!TCF7;;chr19:16435625..16435682,+!p1@KLF2!1.50!931.49!KLF2;;chr3:18486354..18486377,-!p2@SATB1!1.50!37.76!SATB1;;chr2:68592394..68592405,+!p2@PLEK!1.48!28.92!PLEK;;chr3:71355163..71355209,-!p5@FOXP1!1.47!39.55!FOXP1;;chr15:60884706..60884743,-!p1@RORA!1.45!137.07!RORA;;chr17:38020392..38020477,-!p1@IKZF3!1.42!25.47!IKZF3;;chr14:99738059..99738086,-!p2@BCL11B!1.41!24.45!BCL11B;;chr3:71542615..71542644,-!p12@FOXP1!1.40!24.19!FOXP1;;chr7:50343895..50343936,+!p5@IKZF1!1.39!23.81!IKZF1;;chr19:19779619..19779670,+!p1@ZNF101!1.38!63.23!ZNF101;;chr20:50159198..50159299,-!p1@NFATC2!1.37!32.38!NFATC2;;chr14:75988771..75988826,+!p1@BATF!1.35!28.67!BATF;;chr10:8096631..8096660,+!p1@GATA3!1.33!24.45!GATA3;;chr1:26697243..26697258,-!p1@ZNF683!1.32!19.71!ZNF683;;chr2:231090471..231090504,+!p2@SP140!1.32!19.71!SP140;;chr17:38020557..38020572,-!p4@IKZF3!1.31!19.20!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!1.30!116.34!ELF1;;chr8:67525443..67525459,-!p2@MYBL1!1.29!27.26!MYBL1;;chr6:106546731..106546755,+!p5@PRDM1!1.29!18.56!PRDM1;;chr3:18480217..18480239,-!p3@SATB1!1.28!17.92!SATB1;;chr3:71542684..71542720,-!p18@FOXP1!1.27!17.79!FOXP1;;chr10:8096772..8096787,+!p2@GATA3!1.26!20.48!GATA3;;chr11:128392273..128392308,-!p2@ETS1!1.25!70.78!ETS1;;chr4:57522166..57522260,-!p2@HOPX!1.25!19.45!HOPX;;chr11:128392085..128392232,-!p1@ETS1!1.24!533.96!ETS1;;chr4:109090075..109090095,-!p2@LEF1!1.24!16.51!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.23!16.00!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.21!15.36!ZBP1;;chr6:391743..391759,+!p1@IRF4!1.20!14.97!IRF4;;chr4:57522598..57522664,-!p3@HOPX!1.17!13.82!HOPX;;chr11:128563948..128564003,+!p1@FLI1!1.14!152.82!FLI1;;chr17:37934204..37934241,-!p3@IKZF3!1.14!12.80!IKZF3;;chr4:57522513..57522548,-!p4@HOPX!1.12!12.29!HOPX;;chr21:36421347..36421380,-!p8@RUNX1!1.12!12.29!RUNX1;;chr7:50344251..50344288,+!p3@IKZF1!1.12!12.16!IKZF1;;chr6:45296048..45296082,+!p1@RUNX2!1.11!13.69!RUNX2;;chr1:26697189..26697205,-!p2@ZNF683!1.11!11.77!ZNF683;;chr17:37934280..37934299,-!p6@IKZF3!1.11!11.77!IKZF3;;chr17:38020481..38020506,-!p7@IKZF3!1.11!11.77!IKZF3;;chr19:38085768..38085821,+!p1@ZNF540!1.10!17.41!ZNF540;;chr11:47400078..47400106,-!p1@SPI1!1.10!11.65!SPI1;;chr14:64970670..64970712,-!p3@ZBTB25!1.08!24.19!ZBTB25;;chr4:109089901..109089930,-!p3@LEF1!1.08!11.01!LEF1;;chr16:85932760..85932775,+!p1@IRF8!1.07!10.62!IRF8;;chrX:49121165..49121179,-!p1@FOXP3!1.05!10.24!FOXP3;;chr6:106546786..106546802,+!p6@PRDM1!1.04!9.85!PRDM1;;chr13:74707894..74707947,-!p6@KLF12!1.03!10.88!KLF12;;chr16:68119324..68119364,+!p1@NFATC3!1.02!42.62!NFATC3;;chrX:101186981..101187030,-!p1@ZMAT1!1.01!30.33!ZMAT1;;chr6:91006518..91006570,-!p1@BACH2!1.01!21.63!BACH2;;chr4:109088940..109089037,-!p4@LEF1!1.01!9.34!LEF1;;chr4:109088089..109088101,-!p11@LEF1!1.01!9.22!LEF1;;chr3:71542651..71542683,-!p22@FOXP1!1.00!9.09!FOXP1;;chr4:57522674..57522699,-!p5@HOPX!1.00!9.09!HOPX;;chr2:231090344..231090361,-!p3@SP110!1.00!8.96!SP110;;chr19:20748574..20748599,-!p1@ZNF737!0.99!53.88!ZNF737;;chr2:178128250..178128293,-!p6@NFE2L2!0.99!22.40!NFE2L2;;chr8:60031619..60031676,-!p1@TOX!0.99!19.33!TOX;;chr3:18487057..18487105,-!p4@SATB1!0.99!8.83!SATB1;;chr7:50344144..50344157,+!p6@IKZF1!0.99!8.70!IKZF1;;chr20:56195525..56195556,-!p2@ZBP1!0.99!8.70!ZBP1;;chr4:185395633..185395651,-!p2@IRF2!0.98!13.95!IRF2;;chr3:71542747..71542766,-!p34@FOXP1!0.98!8.45!FOXP1;;chr4:109088130..109088163,-!p13@LEF1!0.98!8.45!LEF1;;chr16:88752889..88752921,-!p1@SNAI3!0.97!9.73!SNAI3;;chr1:25291475..25291511,-!p2@RUNX3!0.97!8.32!RUNX3;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!227.30!TSC22D3;;chr14:75988831..75988847,+!p2@BATF!0.96!8.06!BATF;;chr2:145277640..145277771,-!p1@ZEB2!0.95!110.32!ZEB2;;chr4:38665769..38665801,+!p2@KLF3!0.94!72.95!KLF3;;chr3:71179699..71179744,-!p2@FOXP1!0.94!59.51!FOXP1;;chr2:97202991..97203043,+!p3@ARID5A!0.94!7.81!ARID5A;;chr7:137620650..137620677,-!p3@CREB3L2!0.94!7.81!CREB3L2;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.90!RUNX1;;chr9:114287433..114287513,+!p1@ZNF483!0.93!20.35!ZNF483;;chr6:106546834..106546850,+!p4@PRDM1!0.93!7.55!PRDM1;;chr7:50348268..50348366,+!p4@IKZF1!0.93!7.55!IKZF1;;chr7:50343864..50343888,+!p7@IKZF1!0.93!7.42!IKZF1;;chr6:143266297..143266356,-!p1@HIVEP2!0.91!35.84!HIVEP2;;chr1:92951607..92951661,-!p1@GFI1!0.91!7.17!GFI1;;chr16:89789271..89789291,+!p5@ZNF276!0.91!7.04!ZNF276;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.91!ZFY;;chr3:18466787..18466839,-!p1@SATB1!0.89!32.00!SATB1;;chr9:3525727..3525828,-!p2@RFX3!0.89!17.79!RFX3;;chr17:36861675..36861697,+!p3@MLLT6!0.89!16.51!MLLT6;;chr16:3313791..3313834,+!p2@ZNF263!0.89!15.36!ZNF263;;chr9:117150303..117150312,-!p3@AKNA!0.88!8.58!AKNA;;chr20:52226313..52226350,-!p3@ZNF217!0.88!6.66!ZNF217;;chr4:149363494..149363543,-!p1@NR3C2!0.88!6.66!NR3C2;;chr13:74708246..74708264,-!p8@KLF12!0.87!7.17!KLF12;;chr15:60884747..60884774,-!p3@RORA!0.86!16.13!RORA;;chr13:74708029..74708077,-!p2@KLF12!0.85!18.30!KLF12;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.11!RUNX2;;chr14:65569101..65569119,-!p3@MAX!0.83!19.58!MAX;;chr19:12444440..12444455,-!p1@ZNF563!0.83!10.37!ZNF563;;chr3:33482052..33482116,-!p2@UBP1!0.83!9.22!UBP1;;chr21:36421147..36421193,-!p10@RUNX1!0.83!5.76!RUNX1;;chr7:21467674..21467727,+!p1@SP4!0.82!23.55!SP4;;chr16:68119440..68119480,+!p4@NFATC3!0.82!9.60!NFATC3;;chr3:71542827..71542838,-!p53@FOXP1!0.82!5.63!FOXP1;;chr2:148778973..148779035,+!p3@MBD5!0.81!14.97!MBD5;;chr19:53039233..53039247,+!p2@ZNF808!0.81!8.32!ZNF808;;chr19:22193731..22193751,-!p1@ZNF208!0.81!5.50!ZNF208;;chr19:49140609..49140643,-!p1@DBP!0.80!32.12!DBP;;chr19:52674696..52674758,-!p1@ZNF836!0.80!16.77!ZNF836;;chr4:109086281..109086319,-!p9@LEF1!0.80!5.38!LEF1;;chr7:137620684..137620711,-!p4@CREB3L2!0.80!5.38!CREB3L2;;chr19:21512202..21512225,-!p1@ZNF708!0.79!28.92!ZNF708;;chr19:19976634..19976677,+!p2@ZNF253!0.79!19.58!ZNF253;;chr3:114819124..114819200,-!p3@ZBTB20!0.79!12.80!ZBTB20;;chr8:67525473..67525518,-!p1@MYBL1!0.79!12.41!MYBL1;;chr19:23941680..23941704,-!p1@ZNF681!0.78!15.87!ZNF681;;chr16:89787937..89787971,+!p1@ZNF276!0.78!13.95!ZNF276;;chr19:19729477..19729542,-!p1@PBX4!0.78!11.26!PBX4;;chr6:15249128..15249177,+!p4@JARID2!0.78!9.47!JARID2;;chr6:42419649..42419673,-!p3@TRERF1!0.78!9.09!TRERF1;;chr20:51588873..51588953,+!p1@TSHZ2!0.78!6.78!TSHZ2;;chr6:12008986..12009016,+!p3@HIVEP1!0.77!16.25!HIVEP1;;chr17:38020516..38020544,-!p5@IKZF3!0.77!4.86!IKZF3;;chr6:45390300..45390335,+!p4@RUNX2!0.76!7.81!RUNX2;;chrY:21906623..21906637,-!p3@KDM5D!0.75!4.61!KDM5D;;chr4:149366111..149366128,-!p7@NR3C2!0.75!4.61!NR3C2;;chr12:54778471..54778528,-!p1@ZNF385A!0.75!4.61!ZNF385A;;chr19:53073532..53073551,+!p1@ZNF701!0.74!22.53!ZNF701;;chr18:5295679..5295734,-!p2@ZFP161!0.74!10.75!ZFP161;;chrX:131623982..131624011,-!p6@MBNL3!0.74!6.78!MBNL3;;chrY:21906761..21906810,-!p2@KDM5D!0.74!4.48!KDM5D;;chr2:231084659..231084721,-!p1@SP110!0.73!114.16!SP110;;chr7:77428066..77428132,+!p2@PHTF2!0.73!31.61!PHTF2;;chr17:46621311..46621332,-!p8@HOXB2!0.73!5.89!HOXB2;;chr10:8097591..8097627,+!p7@GATA3!0.73!4.35!GATA3;;chrX:131623932..131623964,-!p7@MBNL3!0.72!6.40!MBNL3;;chr19:19779686..19779697,+!p3@ZNF101!0.72!4.99!ZNF101;;chr16:89789248..89789270,+!p8@ZNF276!0.72!4.22!ZNF276;;chrX:134429952..134429971,-!p3@ZNF75D!0.72!4.22!ZNF75D;;chr2:100759010..100759035,-!p1@AFF3!0.72!4.22!AFF3;;chr19:21203451..21203475,+!p1@ZNF430!0.71!47.48!ZNF430;;chr19:19843900..19843928,-!p1@ZNF14!0.71!22.78!ZNF14;;chr5:43065197..43065244,+!p5@ZNF131!0.71!8.45!ZNF131;;chr14:90085458..90085557,-!p1@FOXN3!0.70!47.87!FOXN3;;chr2:231191875..231191918,+!p1@SP140L!0.70!44.41!SP140L;;chr11:67007548..67007610,+!p3@KDM2A!0.70!33.66!KDM2A;;chr7:64126503..64126528,+!p1@ZNF107!0.70!32.12!ZNF107;;chr19:21579908..21579949,+!p1@ZNF493!0.70!27.39!ZNF493;;chr19:36870087..36870110,-!p1@ZFP14!0.70!16.51!ZFP14;;chr7:21467642..21467671,+!p2@SP4!0.70!9.98!SP4;;chr6:91006503..91006517,-!p3@BACH2!0.70!3.97!BACH2;;chr17:45810816..45810838,+!p2@TBX21!0.70!3.97!TBX21;;chr4:109090054..109090073,-!p7@LEF1!0.70!3.97!LEF1;;chr9:88969339..88969422,-!p2@ZCCHC6!0.69!34.43!ZCCHC6;;chr19:37569314..37569381,+!p1@ZNF420!0.69!16.00!ZNF420;;chr16:30583169..30583200,-!p2@ZNF688!0.69!6.14!ZNF688;;chr14:69262947..69262986,-!p3@ZFP36L1!0.69!4.86!ZFP36L1;;chr1:158979686..158979745,+!p1@IFI16!0.68!142.58!IFI16;;chr19:36705998..36706021,+!p2@ZNF146!0.68!62.20!ZNF146;;chr15:77197655..77197716,-!p1@SCAPER!0.68!39.04!SCAPER;;chr13:41240717..41240735,-!p2@FOXO1!0.68!29.69!FOXO1;;chr11:128392265..128392267,-!p10@ETS1!0.68!3.84!ETS1;;chr3:63953415..63953430,+!p15@ATXN7!0.68!3.84!ATXN7;;chr7:50343800..50343811,+!p8@IKZF1!0.68!3.84!IKZF1;;chr3:141121164..141121249,+!p1@ZBTB38!0.67!73.08!ZBTB38;;chr11:13299319..13299424,+!p1@ARNTL!0.67!42.49!ARNTL;;chr9:3525867..3525902,-!p3@RFX3!0.67!14.46!RFX3;;chr11:128392309..128392350,-!p3@ETS1!0.67!9.73!ETS1;;chr8:67525524..67525543,-!p3@MYBL1!0.67!6.53!MYBL1;;chr9:32550965..32551031,-!p4@TOPORS!0.67!6.14!TOPORS;;chr4:109089996..109090012,-!p5@LEF1!0.67!3.71!LEF1;;chr1:151798546..151798590,-!p2@RORC!0.67!3.71!RORC;;chr9:20622444..20622468,-!p2@MLLT3!0.66!12.93!MLLT3;;chr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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12199.12171-128I2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12199.12171-128I2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12199.12171-128I2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12199.12171-128I2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12199.12171-128I2.hg38.nobarcode.ctss.bed.gz
 |id=FF:12171-128I2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000030;;FF:0000210
+|is_a=EFO:0002091;;FF:0000030;;FF:0000210
+|is_obsolete=
+|library_id=CNhs12199
+|library_id_phase_based=2:CNhs12199
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12171
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12171
 |name=CD8+ T Cells (pluriselect), donor090325, donation2
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12199,LSID976,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=128
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=4.957
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=blood
 |top_motifs=ELF1,2,4:2.61595404674;RUNX1..3:2.20383771847;ETS1,2:1.99256934958;STAT1,3:1.97188228322;T:1.93866628508;RORA:1.92807866454;CDX1,2,4:1.91840967589;PAX3,7:1.81911290482;PDX1:1.81881265147;TLX2:1.74336880131;ELK1,4_GABP{A,B1}:1.70201551508;SPI1:1.53924658127;DMAP1_NCOR{1,2}_SMARC:1.46520850853;IRF1,2:1.43321843564;FOXO1,3,4:1.42082289105;FOX{D1,D2}:1.36370701289;BPTF:1.25642561142;FOX{F1,F2,J1}:1.19580346863;SPIB:1.16831211837;CRX:1.08960657501;SPZ1:1.02874485838;HMX1:1.00249159964;PAX6:0.970053676888;LEF1_TCF7_TCF7L1,2:0.959896143581;TGIF1:0.933906158903;GATA6:0.926640611615;IRF7:0.900089982234;FOXA2:0.883317902581;YY1:0.869695142044;BREu{core}:0.812060524592;IKZF2:0.783543293911;NANOG{mouse}:0.761291397099;NRF1:0.751200434955;RFX2..5_RFXANK_RFXAP:0.725299080734;ALX1:0.719608734482;NKX2-2,8:0.690274009405;PBX1:0.688285325758;RBPJ:0.649835068283;CREB1:0.642143114153;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.616605135001;FOXN1:0.515223231256;NKX6-1,2:0.497870289124;ZEB1:0.491138538896;SNAI1..3:0.434391146484;FOX{I1,J2}:0.427270761395;NKX2-1,4:0.426173313849;NFATC1..3:0.377668892244;ATF5_CREB3:0.354079493764;SREBF1,2:0.311112263413;ZNF143:0.308233819144;AR:0.308133024653;EP300:0.307518238281;VSX1,2:0.29081493884;POU1F1:0.27965378629;NFKB1_REL_RELA:0.270455856133;ADNP_IRX_SIX_ZHX:0.258359609954;MYB:0.236118256076;RXRA_VDR{dimer}:0.224227285237;CUX2:0.215851372354;MYOD1:0.198276668513;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.191427033972;PAX2:0.184313670147;AHR_ARNT_ARNT2:0.181510168171;NFIL3:0.150298897942;NR1H4:0.136135338804;SOX5:0.131035639147;ZBTB16:0.130990429159;LMO2:0.117311711012;ZNF148:0.0773151422608;GCM1,2:0.0768550632636;TAL1_TCF{3,4,12}:0.0652245653919;HBP1_HMGB_SSRP1_UBTF:0.0517315000125;PAX4:0.0361329631503;FOXQ1:0.00900339984877;PRRX1,2:-0.00380280149228;NFIX:-0.00920989100898;ATF2:-0.0404825372644;HAND1,2:-0.0406158741187;HES1:-0.056481117238;SOX2:-0.0692505990819;NR5A1,2:-0.0743522122891;OCT4_SOX2{dimer}:-0.0998630988954;TBX4,5:-0.143583115704;HOX{A6,A7,B6,B7}:-0.154193233827;HNF4A_NR2F1,2:-0.162309816894;ARID5B:-0.164285878277;HMGA1,2:-0.172422523704;NANOG:-0.214355270912;E2F1..5:-0.222350132655;FOXD3:-0.237067163987;NFE2L1:-0.252462605949;HNF1A:-0.254556792416;PAX5:-0.288856992209;NFY{A,B,C}:-0.308402777869;MYFfamily:-0.316477551412;FOXP3:-0.327884819202;STAT5{A,B}:-0.343454584308;STAT2,4,6:-0.349728489886;CEBPA,B_DDIT3:-0.365322949114;RREB1:-0.374492081794;TFAP4:-0.374693788312;EVI1:-0.384685079825;HOXA9_MEIS1:-0.395238778519;GLI1..3:-0.403398896117;SMAD1..7,9:-0.409035191697;FOSL2:-0.42860906341;NKX3-1:-0.433834295381;POU5F1:-0.435375032477;ATF4:-0.438293169336;DBP:-0.441251552661;HIF1A:-0.485854338735;GFI1:-0.491833122872;MZF1:-0.504413491182;FOXM1:-0.509188649064;FOXP1:-0.51038695666;NHLH1,2:-0.524861380156;POU2F1..3:-0.528541869526;ZNF423:-0.529379244968;FOS_FOS{B,L1}_JUN{B,D}:-0.537104719817;HLF:-0.541138527133;JUN:-0.541851320852;BACH2:-0.548371595661;ALX4:-0.562408248298;ZFP161:-0.577157966712;MAFB:-0.582701987885;RFX1:-0.584058651471;ZNF238:-0.597968412861;MTF1:-0.603697564493;ESR1:-0.604235236495;NKX2-3_NKX2-5:-0.637223330785;NR3C1:-0.637580726232;TFCP2:-0.648515190099;PAX8:-0.652787406099;EGR1..3:-0.65960508611;NFE2L2:-0.664609715675;PRDM1:-0.668568057738;MEF2{A,B,C,D}:-0.690967114811;ZNF384:-0.724534678768;REST:-0.733268633713;SRF:-0.736377805491;NFE2:-0.744578401827;AIRE:-0.759163819487;ZBTB6:-0.766259578544;MTE{core}:-0.771774438986;MAZ:-0.7923641955;PATZ1:-0.856339673064;ATF6:-0.877351696008;NKX3-2:-0.900438115443;MED-1{core}:-0.910721336324;SOX{8,9,10}:-0.927479081976;HOX{A4,D4}:-0.939924227789;KLF4:-0.940548587767;PPARG:-0.955539491772;EN1,2:-0.958594728334;GATA4:-0.974750354042;XCPE1{core}:-0.986577061945;GTF2I:-1.04401768251;GFI1B:-1.06849828988;LHX3,4:-1.07734138537;ONECUT1,2:-1.08079205182;TP53:-1.08102406996;CDC5L:-1.08688695639;SOX17:-1.10296537764;GZF1:-1.13932501365;bHLH_family:-1.14518621118;PITX1..3:-1.18814103128;XBP1:-1.2047496147;HSF1,2:-1.21848185337;TFDP1:-1.23930491077;UFEwm:-1.23958843421;MYBL2:-1.25764798431;TLX1..3_NFIC{dimer}:-1.26659151933;EBF1:-1.28156450924;POU6F1:-1.32536120879;TFAP2B:-1.35182397219;SP1:-1.37969574305;HOX{A5,B5}:-1.399650367;HIC1:-1.44018493595;RXR{A,B,G}:-1.45187709223;ESRRA:-1.53024285943;TEF:-1.5402165509;NR6A1:-1.56383186647;ZIC1..3:-1.57306779153;TEAD1:-1.60036263658;GTF2A1,2:-1.62634493817;TOPORS:-1.65507496294;TFAP2{A,C}:-1.6941455341;POU3F1..4:-1.75264425293;TBP:-1.87527690629;FOXL1:-1.8894564291;PAX1,9:-2.00030589119;IKZF1:-2.18033907288
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12171-128I2;search_select_hide=table117:FF:12171-128I2
 }}

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FF:12171-128I2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:32, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0