FF:11929-125I3: Difference between revisions

Latest revision as of 18:29, 4 June 2020

Name:	Mallassez-derived cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13550
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ANATOMICAL SYSTEM
dev stage	NA
sex	female
age	29
cell type	epithelial cell rests of Malassez
cell line	NA
company	NA
collaboration	Mitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	MZe6
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005551

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13550		CAGE		DRX008325		DRR009197

Accession ID Hg19

Library id		BAM		CTSS
CNhs13550		DRZ000622		DRZ002007

Accession ID Hg38

Library id		BAM		CTSS
CNhs13550		DRZ011972		DRZ013357

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.102
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.547
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0559
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0.0674
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.142
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.479
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.216
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.888
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.637
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.748
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	1.088
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.402
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.293
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0736
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.607
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.525
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0674
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.4
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13550

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.46
MA0003.1	MA0003.1	0.905
MA0004.1	MA0004.1	0.0162
MA0006.1	MA0006.1	0.0048
MA0007.1	MA0007.1	0.477
MA0009.1	MA0009.1	0.203
MA0014.1	MA0014.1	0.0898
MA0017.1	MA0017.1	0.759
MA0018.2	MA0018.2	0.00472
MA0019.1	MA0019.1	0.024
MA0024.1	MA0024.1	2.31427e-5
MA0025.1	MA0025.1	0.556
MA0027.1	MA0027.1	0.497
MA0028.1	MA0028.1	0.0981
MA0029.1	MA0029.1	0.339
MA0030.1	MA0030.1	0.173
MA0031.1	MA0031.1	0.123
MA0035.2	MA0035.2	0.204
MA0038.1	MA0038.1	0.271
MA0039.2	MA0039.2	0.0022
MA0040.1	MA0040.1	0.402
MA0041.1	MA0041.1	0.401
MA0042.1	MA0042.1	0.985
MA0043.1	MA0043.1	0.0337
MA0046.1	MA0046.1	0.403
MA0047.2	MA0047.2	0.936
MA0048.1	MA0048.1	0.696
MA0050.1	MA0050.1	0.792
MA0051.1	MA0051.1	0.428
MA0052.1	MA0052.1	0.00146
MA0055.1	MA0055.1	0.206
MA0057.1	MA0057.1	0.0571
MA0058.1	MA0058.1	0.0025
MA0059.1	MA0059.1	0.426
MA0060.1	MA0060.1	0.164
MA0061.1	MA0061.1	0.865
MA0062.2	MA0062.2	0.292
MA0065.2	MA0065.2	0.81
MA0066.1	MA0066.1	0.286
MA0067.1	MA0067.1	0.0166
MA0068.1	MA0068.1	3.57043e-6
MA0069.1	MA0069.1	0.209
MA0070.1	MA0070.1	0.593
MA0071.1	MA0071.1	0.0267
MA0072.1	MA0072.1	0.319
MA0073.1	MA0073.1	0.649
MA0074.1	MA0074.1	0.325
MA0076.1	MA0076.1	0.339
MA0077.1	MA0077.1	0.0472
MA0078.1	MA0078.1	0.781
MA0079.2	MA0079.2	0.418
MA0080.2	MA0080.2	9.87442e-4
MA0081.1	MA0081.1	0.304
MA0083.1	MA0083.1	0.414
MA0084.1	MA0084.1	0.122
MA0087.1	MA0087.1	0.839
MA0088.1	MA0088.1	0.952
MA0090.1	MA0090.1	1.45975e-7
MA0091.1	MA0091.1	0.453
MA0092.1	MA0092.1	0.199
MA0093.1	MA0093.1	0.00907
MA0099.2	MA0099.2	1.06479e-11
MA0100.1	MA0100.1	0.454
MA0101.1	MA0101.1	0.45
MA0102.2	MA0102.2	0.18
MA0103.1	MA0103.1	1.58236e-4
MA0104.2	MA0104.2	0.00979
MA0105.1	MA0105.1	0.479
MA0106.1	MA0106.1	2.725e-13
MA0107.1	MA0107.1	0.425
MA0108.2	MA0108.2	0.00701
MA0111.1	MA0111.1	0.878
MA0112.2	MA0112.2	0.15
MA0113.1	MA0113.1	0.51
MA0114.1	MA0114.1	0.772
MA0115.1	MA0115.1	0.143
MA0116.1	MA0116.1	0.606
MA0117.1	MA0117.1	0.645
MA0119.1	MA0119.1	0.288
MA0122.1	MA0122.1	0.794
MA0124.1	MA0124.1	0.834
MA0125.1	MA0125.1	0.0873
MA0131.1	MA0131.1	0.833
MA0135.1	MA0135.1	0.732
MA0136.1	MA0136.1	0.151
MA0137.2	MA0137.2	0.24
MA0138.2	MA0138.2	0.603
MA0139.1	MA0139.1	0.499
MA0140.1	MA0140.1	0.602
MA0141.1	MA0141.1	0.00958
MA0142.1	MA0142.1	0.937
MA0143.1	MA0143.1	0.554
MA0144.1	MA0144.1	0.621
MA0145.1	MA0145.1	0.0178
MA0146.1	MA0146.1	0.539
MA0147.1	MA0147.1	0.0517
MA0148.1	MA0148.1	0.928
MA0149.1	MA0149.1	0.112
MA0150.1	MA0150.1	0.674
MA0152.1	MA0152.1	0.815
MA0153.1	MA0153.1	0.962
MA0154.1	MA0154.1	0.27
MA0155.1	MA0155.1	0.317
MA0156.1	MA0156.1	0.647
MA0157.1	MA0157.1	0.0927
MA0159.1	MA0159.1	0.871
MA0160.1	MA0160.1	0.332
MA0162.1	MA0162.1	0.0357
MA0163.1	MA0163.1	0.821
MA0164.1	MA0164.1	0.814
MA0258.1	MA0258.1	0.333
MA0259.1	MA0259.1	0.0532

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13550

Novel motif	Logo	P-value
1	1	0.911
10	10	0.281
100	100	0.351
101	101	0.327
102	102	0.704
103	103	0.0162
104	104	0.978
105	105	0.518
106	106	0.475
107	107	0.241
108	108	0.605
109	109	0.031
11	11	0.765
110	110	0.488
111	111	0.269
112	112	0.122
113	113	0.261
114	114	0.0518
115	115	0.925
116	116	0.727
117	117	0.288
118	118	0.724
119	119	0.967
12	12	0.831
120	120	0.0345
121	121	0.302
122	122	0.45
123	123	0.0356
124	124	0.0302
125	125	0.965
126	126	0.246
127	127	0.131
128	128	0.966
129	129	0.229
13	13	0.0458
130	130	0.676
131	131	0.306
132	132	0.851
133	133	0.0864
134	134	0.34
135	135	0.693
136	136	0.0609
137	137	0.184
138	138	0.552
139	139	0.859
14	14	0.849
140	140	0.547
141	141	0.731
142	142	0.87
143	143	0.747
144	144	0.561
145	145	0.282
146	146	0.15
147	147	0.519
148	148	0.367
149	149	0.798
15	15	0.745
150	150	0.129
151	151	0.52
152	152	0.0072
153	153	0.726
154	154	0.748
155	155	0.851
156	156	0.538
157	157	0.287
158	158	0.106
159	159	0.819
16	16	0.075
160	160	0.663
161	161	0.956
162	162	0.877
163	163	0.873
164	164	0.899
165	165	0.239
166	166	0.95
167	167	0.321
168	168	0.0934
169	169	0.0957
17	17	0.466
18	18	0.253
19	19	0.989
2	2	0.223
20	20	0.796
21	21	0.583
22	22	0.703
23	23	0.211
24	24	0.0106
25	25	0.687
26	26	0.799
27	27	0.676
28	28	0.303
29	29	0.699
3	3	0.919
30	30	0.0434
31	31	0.943
32	32	0.763
33	33	0.074
34	34	0.401
35	35	0.0358
36	36	0.232
37	37	0.0893
38	38	0.706
39	39	0.391
4	4	0.42
40	40	0.0883
41	41	0.509
42	42	0.868
43	43	0.73
44	44	0.345
45	45	0.0457
46	46	0.979
47	47	0.469
48	48	0.187
49	49	0.307
5	5	0.863
50	50	0.634
51	51	0.94
52	52	0.136
53	53	0.228
54	54	0.62
55	55	0.133
56	56	0.333
57	57	0.593
58	58	0.968
59	59	0.517
6	6	0.524
60	60	0.255
61	61	0.266
62	62	0.891
63	63	0.345
64	64	0.78
65	65	0.88
66	66	0.441
67	67	0.675
68	68	0.357
69	69	0.384
7	7	0.519
70	70	0.134
71	71	0.496
72	72	0.845
73	73	0.00204
74	74	0.0941
75	75	0.439
76	76	0.852
77	77	0.0972
78	78	0.0132
79	79	0.613
8	8	0.841
80	80	0.978
81	81	0.205
82	82	0.803
83	83	0.308
84	84	0.113
85	85	0.704
86	86	0.772
87	87	0.00852
88	88	0.855
89	89	0.0318
9	9	0.725
90	90	0.258
91	91	0.751
92	92	0.592
93	93	0.152
94	94	0.883
95	95	0.121
96	96	0.866
97	97	0.393
98	98	0.415
99	99	0.207

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13550

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000087 human Malassez derived epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002166 (epithelial cell of Malassez)

UBERON: Anatomy
0000468 (multi-cellular organism)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0004765 (skeletal element)
0001708 (jaw skeleton)
0011159 (primary subdivision of cranial skeletal system)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0008895 (splanchnocranium)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000087 (human Malassez derived epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002100,UBERON:0000033,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0000075,UBERON:0001708,UBERON:0003104,UBERON:0000914,UBERON:0005256,UBERON:0006598,UBERON:0002532,UBERON:0002329,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0002090,UBERON:0003129,UBERON:0001704,UBERON:0005944,UBERON:0003077,UBERON:0009142,UBERON:0004288,UBERON:0006603,UBERON:0003089,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
+|DRA_sample_Accession=CAGE@SAMD00005551
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000221,CL:0000220,CL:0000004,CL:0002159,CL:0000255,CL:0002077,CL:0002166
+|accession_numbers=CAGE;DRX008325;DRR009197;DRZ000622;DRZ002007;DRZ011972;DRZ013357
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0001708,UBERON:0011159,UBERON:0002204,UBERON:0001434,UBERON:0008895,UBERON:0011137,UBERON:0010323
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002159,CL:0000255,CL:0002077,CL:0002166
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000087
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.19!171.34!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.06!112.88!SOX15;;chr3:111314186..111314204,-!p1@ZBED2!2.05!111.71!ZBED2;;chr11:34642612..34642646,+!p1@EHF!1.97!93.40!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.84!68.54!IRF6;;chr1:6479968..6479986,-!p1@HES2!1.79!60.81!HES2;;chr3:189507432..189507459,+!p1@TP63!1.74!54.09!TP63;;chr6:10415276..10415341,-!p2@TFAP2A!1.64!52.24!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.51!51.74!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.50!34.94!BNC1;;chr4:111544219..111544240,-!p1@PITX2!1.50!30.74!PITX2;;chr11:34645791..34645836,+!p3@EHF!1.48!29.40!EHF;;chr15:101069113..101069169,-!p1@CERS3!1.46!28.05!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.42!28.72!ZNF385A;;chr3:111314230..111314241,-!p2@ZBED2!1.42!25.20!ZBED2;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.44!PITX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.49!ZBED1;;chr12:54785074..54785122,-!p2@ZNF385A!1.30!28.72!ZNF385A;;chr21:36421535..36421610,-!p2@RUNX1!1.27!62.32!RUNX1;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.74!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.10!TFAP2A;;chr8:49833948..49833973,-!p2@SNAI2!1.14!80.46!SNAI2;;chr8:10588010..10588030,-!p1@SOX7!1.09!11.42!SOX7;;chr5:134369879..134369898,-!p2@PITX1!1.07!10.75!PITX1;;chr12:66218598..66218645,+!p2@HMGA2!1.04!46.87!HMGA2;;chr4:111558135..111558198,-!p2@PITX2!1.04!10.08!PITX2;;chr20:39317868..39317884,-!p1@MAFB!1.03!115.74!MAFB;;chr8:49833978..49833996,-!p1@SNAI2!1.02!196.54!SNAI2;;chr12:66218836..66218888,+!p1@HMGA2!1.02!89.37!HMGA2;;chr11:34642656..34642667,+!p2@EHF!1.02!9.57!EHF;;chr9:100615499..100615519,+!p1@FOXE1!1.02!9.41!FOXE1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.01!82.82!PPP1R13L;;chr14:74256787..74256858,-!p6@C14orf43!0.97!8.23!C14orf43;;chr16:67881588..67881612,-!p2@CENPT!0.96!11.25!CENPT;;chr19:53496768..53496799,-!p1@ZNF702P!0.93!11.76!ZNF702P;;chr5:72744594..72744609,-!p1@FOXD1!0.91!34.27!FOXD1;;chr1:158979792..158979814,+!p2@IFI16!0.90!69.21!IFI16;;chr8:102504651..102504683,+!p1@GRHL2!0.88!6.55!GRHL2;;chr2:231084639..231084654,-!p2@SP110!0.87!10.92!SP110;;chr5:2751762..2751784,-!p1@IRX2!0.87!6.38!IRX2;;chr19:42636586..42636607,-!p1@POU2F2!0.85!17.64!POU2F2;;chr20:55204351..55204377,+!p1@TFAP2C!0.82!7.22!TFAP2C;;chr12:27485762..27485776,+!p3@ARNTL2!0.81!15.62!ARNTL2;;chr1:209979375..209979386,-!p4@IRF6!0.80!5.38!IRF6;;chr5:3595977..3595999,+!p1@IRX1!0.79!5.21!IRX1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.79!5.21!TFCP2L1;;chr16:54320646..54320672,-!p2@IRX3!0.78!7.90!IRX3;;chr17:3571863..3571881,-!p1@TAX1BP3!0.74!356.46!TAX1BP3;;chr2:46524897..46524911,+!p2@EPAS1!0.74!13.77!EPAS1;;chr16:54320101..54320125,-!p4@IRX3!0.74!6.72!IRX3;;chrX:56258844..56258882,+!p1@KLF8!0.73!6.22!KLF8;;chr22:19748231..19748317,+!p1@TBX1!0.73!4.37!TBX1;;chr3:69811858..69811881,+!p5@MITF!0.73!4.37!MITF;;chr11:34643638..34643667,+!p8@EHF!0.73!4.37!EHF;;chr12:48298765..48298783,-!p2@VDR!0.72!9.57!VDR;;chr6:28321909..28321965,-!p3@ZNF323!0.72!4.20!ZNF323;;chr15:83953373..83953386,-!p2@BNC1!0.72!4.20!BNC1;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.20!ZNF668;;chr3:32023232..32023273,+!p1@ZNF860!0.71!6.22!ZNF860;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.71!KLF5;;chr12:66218255..66218304,+!p3@HMGA2!0.70!11.76!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.38!ZBTB38;;chr2:231084820..231084836,-!p5@SP110!0.70!4.70!SP110;;chr2:63277948..63277974,+!p1@OTX1!0.70!4.03!OTX1;;chr1:209979449..209979460,-!p3@IRF6!0.70!4.03!IRF6;;chr16:67881647..67881663,-!p3@CENPT!0.70!4.03!CENPT;;chr16:54320617..54320643,-!p3@IRX3!0.69!5.21!IRX3;;chr6:10412576..10412599,-!p5@TFAP2A!0.69!3.86!TFAP2A;;chr13:41593425..41593480,-!p1@ELF1!0.68!27.55!ELF1;;chr1:151032782..151032801,+!p4@MLLT11!0.68!8.23!MLLT11;;chr3:170076314..170076334,+!p2@SKIL!0.66!4.87!SKIL;;chr12:66218904..66218913,+!p11@HMGA2!0.66!3.53!HMGA2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.65!49.89!ZC3H12A;;chr6:10412392..10412409,-!p4@TFAP2A!0.65!4.03!TFAP2A;;chr1:203764633..203764674,+!p2@ZC3H11A!0.64!5.88!ZC3H11A;;chr19:57792157..57792170,+!p6@ZNF460!0.64!5.21!ZNF460;;chr6:106546808..106546833,+!p3@PRDM1!0.64!4.37!PRDM1;;chr6:10415263..10415274,-!p8@TFAP2A!0.64!3.36!TFAP2A;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.20!MLLT11;;chr17:70117153..70117174,+!p1@SOX9!0.63!39.64!SOX9;;chr7:28725740..28725778,+!p1@CREB5!0.63!34.10!CREB5;;chr16:54320675..54320715,-!p1@IRX3!0.62!7.73!IRX3;;chr12:66218183..66218209,+!p4@HMGA2!0.62!6.72!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!0.62!4.03!HMGA2;;chr11:31832658..31832681,-!p1@PAX6!0.62!3.19!PAX6;;chr6:28321971..28321995,-!p1@ZNF323!0.62!3.19!ZNF323;;chr6:41701557..41701578,-!p3@TFEB!0.62!3.19!TFEB;;chr4:188916918..188916942,+!p1@ZFP42!0.62!3.19!ZFP42;;chr12:72056800..72056834,+!p1@THAP2!0.61!4.37!THAP2;;chr2:231084659..231084721,-!p1@SP110!0.60!83.66!SP110;;chr2:208030647..208030689,-!p1@KLF7!0.60!30.24!KLF7;;chr19:20278012..20278034,+!p1@ZNF486!0.60!30.07!ZNF486;;chr12:27485785..27485816,+!p1@ARNTL2!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
+|ffid_belonging_in_development=CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11929-125I3
-|is_a=EFO:0002091;;FF:0000002;;FF:0000087;;FF:0000210
+|is_a=EFO:0002091;;FF:0000087
+|is_obsolete=
+|library_id=CNhs13550
+|library_id_phase_based=2:CNhs13550
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11929
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11929
 |name=Mallassez-derived cells, donor2
 |namespace=
@@ Line 44: / Line 63: @@
 |profile_rnaseq=
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 |rna_box=125
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=21.7974
 |sample_age=29
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 73: / Line 96: @@
 |sample_note=
 |sample_sex=female
-|sample_species=
+|sample_species=Human (Homo sapiens)
 |sample_strain=
 |sample_tissue=ANATOMICAL SYSTEM
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11929-125I3;search_select_hide=table117:FF:11929-125I3
 }}

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FF:11929-125I3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:29, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0