FF:10810-111A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005708 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005708 | ||
|accession_numbers=CAGE;DRX007823;DRR008695;DRZ000120;DRZ001505;DRZ011470;DRZ012855 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057145;DRR062904;DRZ007980 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002369,UBERON:0002100,UBERON:0001851,UBERON:0001235,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0005172,UBERON:0002530,UBERON:0006858,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:299 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:299 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:56100179..56100208,-!p1@CTCFL!1.93!83.74!CTCFL;;chr3:181429704..181429722,+!p1@SOX2!1.92!81.92!SOX2;;chr12:66218255..66218304,+!p3@HMGA2!1.74!138.84!HMGA2;;chr3:181429741..181429767,+!p2@SOX2!1.71!50.36!SOX2;;chr12:66218598..66218645,+!p2@HMGA2!1.66!198.18!HMGA2;;chr7:15726296..15726315,-!p1@MEOX2!1.58!37.38!MEOX2;;chrX:85403445..85403479,+!p2@DACH2!1.54!33.98!DACH2;;chr12:66218923..66218934,+!p14@HMGA2!1.51!31.31!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.46!248.91!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.46!39.81!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.42!25.36!HMGA2;;chr17:8027418..8027432,-!p1@HES7!1.41!24.64!HES7;;chr7:15726176..15726191,-!p3@MEOX2!1.40!23.91!MEOX2;;chr12:66218378..66218401,+!p6@HMGA2!1.34!32.40!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.32!25.24!HMGA2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.32!19.90!SOHLH2;;chr8:80679993..80680011,-!p1@HEY1!1.31!27.79!HEY1;;chr7:15726243..15726293,-!p2@MEOX2!1.30!18.93!MEOX2;;chr7:63505799..63505904,+!p1@ZNF727!1.28!18.20!ZNF727;;chr5:50679228..50679288,+!p1@ISL1!1.26!17.23!ISL1;;chr12:66218183..66218209,+!p4@HMGA2!1.23!30.83!HMGA2;;chr2:177053386..177053402,+!p1@HOXD1!1.23!16.02!HOXD1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.22!15.78!PEG3;;chr3:32023232..32023273,+!p1@ZNF860!1.18!20.27!ZNF860;;chr17:41623692..41623715,-!p1@ETV4!1.17!58.62!ETV4;;chr5:92920456..92920488,+!p9@NR2F1!1.17!15.90!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!1.17!14.93!NR2F1;;chr9:14314131..14314147,-!p2@NFIB!1.15!73.67!NFIB;;chr12:66218420..66218439,+!p12@HMGA2!1.15!13.11!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.57!HMGA2;;chr10:102505493..102505546,+!p2@PAX2!1.12!12.14!PAX2;;chr1:935467..935484,-!p1@HES4!1.11!52.19!HES4;;chr2:45168997..45169020,+!p4@SIX3!1.11!11.89!SIX3;;chr12:66218469..66218477,+!p16@HMGA2!1.10!11.53!HMGA2;;chr2:45168834..45168847,+!p2@SIX3!1.08!11.04!SIX3;;chr5:92918919..92918942,+!p1@NR2F1!1.06!47.21!NR2F1;;chr8:60031682..60031710,-!p2@TOX!1.06!17.23!TOX;;chr19:57352109..57352153,-!p2@ZIM2!1.06!10.44!ZIM2;;chr2:172967621..172967637,-!p1@DLX2!1.05!27.79!DLX2;;chr9:14314106..14314119,-!p5@NFIB!1.05!18.57!NFIB;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.04!10.07!ZBED1;;chr10:70320041..70320065,+!p2@TET1!1.00!9.10!TET1;;chr12:54378923..54378966,+!p1@HOXC10!0.99!8.74!HOXC10;;chr12:66218152..66218174,+!p10@HMGA2!0.98!9.22!HMGA2;;chr14:38064429..38064486,-!p1@FOXA1!0.98!8.50!FOXA1;;chr7:96634850..96634874,+!p3@DLX6!0.98!8.50!DLX6;;chr8:60031762..60031803,-!p3@TOX!0.97!12.26!TOX;;chr19:58545369..58545404,+!p2@ZSCAN1!0.96!8.13!ZSCAN1;;chr5:172662197..172662216,-!p1@NKX2-5!0.95!7.89!NKX2-5;;chr7:15725992..15726043,-!p7@MEOX2!0.95!7.89!MEOX2;;chr8:60031809..60031835,-!p4@TOX!0.94!9.95!TOX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.93!7.52!ZSCAN1;;chr19:23299814..23299844,+!p1@ZNF730!0.92!9.10!ZNF730;;chr8:80680024..80680046,-!p2@HEY1!0.92!8.25!HEY1;;chr8:60031840..60031869,-!p5@TOX!0.92!7.40!TOX;;chr22:19748231..19748317,+!p1@TBX1!0.91!7.04!TBX1;;chr8:60031619..60031676,-!p1@TOX!0.90!15.53!TOX;;chr2:45168875..45168916,+!p1@SIX3!0.90!6.92!SIX3;;chr7:15725757..15725828,-!p5@MEOX2!0.89!6.67!MEOX2;;chr1:23857325..23857416,-!p2@E2F2!0.88!7.77!E2F2;;chr7:15726220..15726236,-!p4@MEOX2!0.86!6.31!MEOX2;;chr15:37392724..37392757,-!p1@MEIS2!0.85!29.25!MEIS2;;chr9:126773880..126773895,+!p2@LHX2!0.85!6.07!LHX2;;chr1:151032142..151032195,+!p5@MLLT11!0.84!11.77!MLLT11;;chr3:185826764..185826803,-!p2@ETV5!0.83!22.82!ETV5;;chr20:35201857..35201882,+!p4@TGIF2!0.83!8.25!TGIF2;;chr19:48774586..48774670,+!p1@ZNF114!0.83!7.28!ZNF114;;chr20:50418972..50419029,-!p1@SALL4!0.83!5.83!SALL4;;chr17:41623716..41623727,-!p12@ETV4!0.83!5.83!ETV4;;chr9:14314066..14314075,-!p11@NFIB!0.83!5.70!NFIB;;chr7:27190547..27190591,-!p1@HOXA6!0.83!5.70!HOXA6;;chr17:46682321..46682362,-!p1@HOXB6!0.82!5.58!HOXB6;;chr12:66218003..66218018,+!p9@HMGA2!0.81!6.80!HMGA2;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.80!39.44!ZNF410;;chr19:23433144..23433204,-!p1@ZNF724P!0.80!25.49!ZNF724P;;chrX:129402768..129402796,-!p2@ZNF280C!0.80!17.72!ZNF280C;;chr2:74375081..74375092,-!p2@BOLA3!0.79!11.29!BOLA3;;chr6:32158046..32158055,-!p4@PBX2!0.79!5.22!PBX2;;chr7:15726206..15726217,-!p6@MEOX2!0.79!5.22!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.79!5.10!HOXD8;;chr1:23885981..23886002,-!p1@ID3!0.78!958.63!ID3;;chr12:3068544..3068597,+!p1@TEAD4!0.78!32.89!TEAD4;;chr7:14029283..14029311,-!p1@ETV1!0.78!29.13!ETV1;;chr19:21264943..21264958,+!p3@ZNF714!0.78!6.92!ZNF714;;chr5:172662230..172662241,-!p3@NKX2-5!0.78!4.98!NKX2-5;;chr2:45168959..45168990,+!p6@SIX3!0.78!4.98!SIX3;;chr12:66357214..66357233,+!p13@HMGA2!0.78!4.98!HMGA2;;chr14:33403881..33403924,+!p1@NPAS3!0.78!4.98!NPAS3;;chr2:75937794..75937867,-!p2@GCFC2!0.77!11.53!GCFC2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.85!HOXC5;;chr14:55493763..55493824,-!p1@WDHD1!0.76!39.56!WDHD1;;chr14:74226961..74227020,-!p1@C14orf43!0.76!34.10!C14orf43;;chr19:22235279..22235301,+!p1@ZNF257!0.7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chr19:21688387..21688432,+!p1@ZNF429!0.21!8.25!ZNF429;;chr6:143266297..143266356,-!p1@HIVEP2!0.21!6.31!HIVEP2;;chr19:21512144..21512191,-!p2@ZNF708!0.21!6.07!ZNF708;;chr19:53289995..53290050,-!p1@ZNF600!0.21!5.34!ZNF600;;chr19:9785724..9785740,-!p2@ZNF562!0.21!5.10!ZNF562;;chr12:104531854..104531893,-!p2@NFYB!0.21!4.61!NFYB;;chr19:58326267..58326292,-!p1@ZNF552!0.21!4.49!ZNF552;;chr8:144373550..144373617,+!p1@ZNF696!0.21!4.49!ZNF696;;chr1:23694794..23694863,-!p1@ZNF436!0.21!4.25!ZNF436;;chr7:74072135..74072171,+!p2@GTF2I!0.21!3.76!GTF2I;;chr5:178157609..178157650,-!p2@ZNF354A!0.21!3.28!ZNF354A;;chr2:178128250..178128293,-!p6@NFE2L2!0.21!2.91!NFE2L2;;chr7:102985288..102985310,-!p2@DNAJC2!0.21!2.67!DNAJC2;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.21!2.67!ZKSCAN5;;chr12:80084167..80084197,-!p5@PAWR!0.21!2.67!PAWR;;chr19:58570605..58570655,+!p1@ZNF135!0.21!1.82!ZNF135;;chr1:59165763..59165780,-!p2@MYSM1!0.21!1.82!MYSM1;;chr12:6798523..6798548,-!p6@ZNF384!0.21!1.70!ZNF384;;chr6:28303901..28303944,-!p2@ZNF323!0.21!1.58!ZNF323;;chr5:178322893..178322931,+!p1@ZFP2!0.21!1.33!ZFP2;;chr10:94449649..94449664,+!p3@HHEX!0.21!1.33!HHEX;;chr12:56401175..56401225,+!p3@IKZF4!0.21!1.33!IKZF4;;chr19:20011731..20011743,+!p3@ZNF93!0.21!1.09!ZNF93;;chr20:52210338..52210352,-!p4@ZNF217!0.21!0.97!ZNF217;;chr19:19303794..19303805,+!p5@RFXANK!0.21!0.85!RFXANK;;chr15:37391614..37391626,-!p18@MEIS2!0.21!0.61!MEIS2;;chr17:46655578..46655589,-!p4@HOXB4!0.21!0.61!HOXB4;;chr17:46703240..46703257,-!p6@HOXB9!0.21!0.61!HOXB9;;chr17:48045917..48045977,+!p1@DLX4!0.21!0.61!DLX4;;chr18:55102628..55102646,+!p2@ONECUT2!0.21!0.61!ONECUT2;;chr19:38720356..38720369,-!p4@DPF1!0.21!0.61!DPF1;;chr19:50529307..50529323,+!p3@ZNF473!0.21!0.61!ZNF473;;chr1:3569101..3569115,+!p2@TP73!0.21!0.61!TP73;;chr1:3569135..3569150,+!p3@TP73!0.21!0.61!TP73;;chr1:8763394..8763399,-!p34@RERE!0.21!0.61!RERE;;chr20:2673369..2673382,+!p2@EBF4!0.21!0.61!EBF4;;chr6:21597499..21597513,+!p16@SOX4!0.21!0.61!SOX4;;chr7:21468134..21468143,+!p6@SP4!0.21!0.61!SP4;;chr8:144512897..144512903,-!p1@MAFA!0.21!0.61!MAFA;;chr8:30891078..30891128,-!p2@PURG!0.21!0.61!PURG;;chr2:176987441..176987454,+!p1@HOXD9!0.21!0.61!HOXD9;;chr2:176995011..176995029,+!p6@HOXD8!0.21!0.61!HOXD8;;chr2:200322259..200322280,-!p5@SATB2!0.21!0.61!SATB2;;chr3:181430496..181430506,+!p6@SOX2!0.21!0.61!SOX2;;chr3:25469815..25469866,+!p3@RARB!0.21!0.61!RARB;;chr10:102505312..102505320,+!p6@PAX2!0.21!0.61!PAX2;;chr11:31832610..31832639,-!p5@PAX6!0.21!0.61!PAX6;;chr11:64764402..64764413,-!p2@BATF2!0.21!0.61!BATF2;;chr11:8040739..8040815,+!p4@TUB!0.21!0.61!TUB;;chr12:54332608..54332636,+!p1@HOXC13!0.21!0.61!HOXC13;;chr12:54379477..54379498,+!p5@HOXC5!0.21!0.61!HOXC5;;chr13:100633726..100633749,+!p6@ZIC2!0.21!0.61!ZIC2;;chr14:33408057..33408068,+!p9@NPAS3!0.21!0.61!NPAS3;;chr14:45722418..45722426,-!p6@MIS18BP1!0.21!0.61!MIS18BP1;;chr9:14308004..14308041,-!p14@NFIB!0.21!0.61!NFIB;;chr9:14314946..14314983,-!p8@NFIB!0.21!0.61!NFIB;;chr19:6424813..6424835,-!p1@KHSRP!0.20!88.47!KHSRP;;chr19:56154958..56155027,+!p1@ZNF581!0.20!47.33!ZNF581;;chr19:58331088..58331106,+!p1@ZNF587!0.20!19.66!ZNF587;;chr6:155635583..155635644,-!p1@TFB1M!0.20!18.08!TFB1M;;chr7:44925044..44925156,-!p1@PURB!0.20!10.80!PURB;;chr19:58740266..58740297,+!p1@ZNF544!0.20!9.71!ZNF544;;chr6:33422343..33422394,+!p1@ZBTB9!0.20!8.86!ZBTB9;;chr16:3450963..3451019,-!p1@ZNF434!0.20!8.13!ZNF434;;chr19:52511437..52511490,-!p1@ZNF615!0.20!7.65!ZNF615;;chr15:57025759..57025811,-!p2@ZNF280D!0.20!6.67!ZNF280D;;chr17:41322281..41322328,-!p2@BRCA1!0.20!3.40!BRCA1;;chr19:37341160..37341194,-!p2@ZNF790!0.20!2.31!ZNF790;;chr1:249153114..249153175,-!p3@ZNF692!0.20!1.94!ZNF692;;chr12:52430894..52430952,+!p3@NR4A1!0.20!1.94!NR4A1;;chr3:178789622..178789633,-!p3@ZMAT3!0.20!1.94!ZMAT3;; | |expression_enrichment_score=chr20:56100179..56100208,-!p1@CTCFL!1.93!83.74!CTCFL;;chr3:181429704..181429722,+!p1@SOX2!1.92!81.92!SOX2;;chr12:66218255..66218304,+!p3@HMGA2!1.74!138.84!HMGA2;;chr3:181429741..181429767,+!p2@SOX2!1.71!50.36!SOX2;;chr12:66218598..66218645,+!p2@HMGA2!1.66!198.18!HMGA2;;chr7:15726296..15726315,-!p1@MEOX2!1.58!37.38!MEOX2;;chrX:85403445..85403479,+!p2@DACH2!1.54!33.98!DACH2;;chr12:66218923..66218934,+!p14@HMGA2!1.51!31.31!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.46!248.91!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.46!39.81!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.42!25.36!HMGA2;;chr17:8027418..8027432,-!p1@HES7!1.41!24.64!HES7;;chr7:15726176..15726191,-!p3@MEOX2!1.40!23.91!MEOX2;;chr12:66218378..66218401,+!p6@HMGA2!1.34!32.40!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.32!25.24!HMGA2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.32!19.90!SOHLH2;;chr8:80679993..80680011,-!p1@HEY1!1.31!27.79!HEY1;;chr7:15726243..15726293,-!p2@MEOX2!1.30!18.93!MEOX2;;chr7:63505799..63505904,+!p1@ZNF727!1.28!18.20!ZNF727;;chr5:50679228..50679288,+!p1@ISL1!1.26!17.23!ISL1;;chr12:66218183..66218209,+!p4@HMGA2!1.23!30.83!HMGA2;;chr2:177053386..177053402,+!p1@HOXD1!1.23!16.02!HOXD1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.22!15.78!PEG3;;chr3:32023232..32023273,+!p1@ZNF860!1.18!20.27!ZNF860;;chr17:41623692..41623715,-!p1@ETV4!1.17!58.62!ETV4;;chr5:92920456..92920488,+!p9@NR2F1!1.17!15.90!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!1.17!14.93!NR2F1;;chr9:14314131..14314147,-!p2@NFIB!1.15!73.67!NFIB;;chr12:66218420..66218439,+!p12@HMGA2!1.15!13.11!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.57!HMGA2;;chr10:102505493..102505546,+!p2@PAX2!1.12!12.14!PAX2;;chr1:935467..935484,-!p1@HES4!1.11!52.19!HES4;;chr2:45168997..45169020,+!p4@SIX3!1.11!11.89!SIX3;;chr12:66218469..66218477,+!p16@HMGA2!1.10!11.53!HMGA2;;chr2:45168834..45168847,+!p2@SIX3!1.08!11.04!SIX3;;chr5:92918919..92918942,+!p1@NR2F1!1.06!47.21!NR2F1;;chr8:60031682..60031710,-!p2@TOX!1.06!17.23!TOX;;chr19:57352109..57352153,-!p2@ZIM2!1.06!10.44!ZIM2;;chr2:172967621..172967637,-!p1@DLX2!1.05!27.79!DLX2;;chr9:14314106..14314119,-!p5@NFIB!1.05!18.57!NFIB;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.04!10.07!ZBED1;;chr10:70320041..70320065,+!p2@TET1!1.00!9.10!TET1;;chr12:54378923..54378966,+!p1@HOXC10!0.99!8.74!HOXC10;;chr12:66218152..66218174,+!p10@HMGA2!0.98!9.22!HMGA2;;chr14:38064429..38064486,-!p1@FOXA1!0.98!8.50!FOXA1;;chr7:96634850..96634874,+!p3@DLX6!0.98!8.50!DLX6;;chr8:60031762..60031803,-!p3@TOX!0.97!12.26!TOX;;chr19:58545369..58545404,+!p2@ZSCAN1!0.96!8.13!ZSCAN1;;chr5:172662197..172662216,-!p1@NKX2-5!0.95!7.89!NKX2-5;;chr7:15725992..15726043,-!p7@MEOX2!0.95!7.89!MEOX2;;chr8:60031809..60031835,-!p4@TOX!0.94!9.95!TOX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.93!7.52!ZSCAN1;;chr19:23299814..23299844,+!p1@ZNF730!0.92!9.10!ZNF730;;chr8:80680024..80680046,-!p2@HEY1!0.92!8.25!HEY1;;chr8:60031840..60031869,-!p5@TOX!0.92!7.40!TOX;;chr22:19748231..19748317,+!p1@TBX1!0.91!7.04!TBX1;;chr8:60031619..60031676,-!p1@TOX!0.90!15.53!TOX;;chr2:45168875..45168916,+!p1@SIX3!0.90!6.92!SIX3;;chr7:15725757..15725828,-!p5@MEOX2!0.89!6.67!MEOX2;;chr1:23857325..23857416,-!p2@E2F2!0.88!7.77!E2F2;;chr7:15726220..15726236,-!p4@MEOX2!0.86!6.31!MEOX2;;chr15:37392724..37392757,-!p1@MEIS2!0.85!29.25!MEIS2;;chr9:126773880..126773895,+!p2@LHX2!0.85!6.07!LHX2;;chr1:151032142..151032195,+!p5@MLLT11!0.84!11.77!MLLT11;;chr3:185826764..185826803,-!p2@ETV5!0.83!22.82!ETV5;;chr20:35201857..35201882,+!p4@TGIF2!0.83!8.25!TGIF2;;chr19:48774586..48774670,+!p1@ZNF114!0.83!7.28!ZNF114;;chr20:50418972..50419029,-!p1@SALL4!0.83!5.83!SALL4;;chr17:41623716..41623727,-!p12@ETV4!0.83!5.83!ETV4;;chr9:14314066..14314075,-!p11@NFIB!0.83!5.70!NFIB;;chr7:27190547..27190591,-!p1@HOXA6!0.83!5.70!HOXA6;;chr17:46682321..46682362,-!p1@HOXB6!0.82!5.58!HOXB6;;chr12:66218003..66218018,+!p9@HMGA2!0.81!6.80!HMGA2;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.80!39.44!ZNF410;;chr19:23433144..23433204,-!p1@ZNF724P!0.80!25.49!ZNF724P;;chrX:129402768..129402796,-!p2@ZNF280C!0.80!17.72!ZNF280C;;chr2:74375081..74375092,-!p2@BOLA3!0.79!11.29!BOLA3;;chr6:32158046..32158055,-!p4@PBX2!0.79!5.22!PBX2;;chr7:15726206..15726217,-!p6@MEOX2!0.79!5.22!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.79!5.10!HOXD8;;chr1:23885981..23886002,-!p1@ID3!0.78!958.63!ID3;;chr12:3068544..3068597,+!p1@TEAD4!0.78!32.89!TEAD4;;chr7:14029283..14029311,-!p1@ETV1!0.78!29.13!ETV1;;chr19:21264943..21264958,+!p3@ZNF714!0.78!6.92!ZNF714;;chr5:172662230..172662241,-!p3@NKX2-5!0.78!4.98!NKX2-5;;chr2:45168959..45168990,+!p6@SIX3!0.78!4.98!SIX3;;chr12:66357214..66357233,+!p13@HMGA2!0.78!4.98!HMGA2;;chr14:33403881..33403924,+!p1@NPAS3!0.78!4.98!NPAS3;;chr2:75937794..75937867,-!p2@GCFC2!0.77!11.53!GCFC2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.85!HOXC5;;chr14:55493763..55493824,-!p1@WDHD1!0.76!39.56!WDHD1;;chr14:74226961..74227020,-!p1@C14orf43!0.76!34.10!C14orf43;;chr19:22235279..22235301,+!p1@ZNF257!0.7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chr19:21688387..21688432,+!p1@ZNF429!0.21!8.25!ZNF429;;chr6:143266297..143266356,-!p1@HIVEP2!0.21!6.31!HIVEP2;;chr19:21512144..21512191,-!p2@ZNF708!0.21!6.07!ZNF708;;chr19:53289995..53290050,-!p1@ZNF600!0.21!5.34!ZNF600;;chr19:9785724..9785740,-!p2@ZNF562!0.21!5.10!ZNF562;;chr12:104531854..104531893,-!p2@NFYB!0.21!4.61!NFYB;;chr19:58326267..58326292,-!p1@ZNF552!0.21!4.49!ZNF552;;chr8:144373550..144373617,+!p1@ZNF696!0.21!4.49!ZNF696;;chr1:23694794..23694863,-!p1@ZNF436!0.21!4.25!ZNF436;;chr7:74072135..74072171,+!p2@GTF2I!0.21!3.76!GTF2I;;chr5:178157609..178157650,-!p2@ZNF354A!0.21!3.28!ZNF354A;;chr2:178128250..178128293,-!p6@NFE2L2!0.21!2.91!NFE2L2;;chr7:102985288..102985310,-!p2@DNAJC2!0.21!2.67!DNAJC2;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.21!2.67!ZKSCAN5;;chr12:80084167..80084197,-!p5@PAWR!0.21!2.67!PAWR;;chr19:58570605..58570655,+!p1@ZNF135!0.21!1.82!ZNF135;;chr1:59165763..59165780,-!p2@MYSM1!0.21!1.82!MYSM1;;chr12:6798523..6798548,-!p6@ZNF384!0.21!1.70!ZNF384;;chr6:28303901..28303944,-!p2@ZNF323!0.21!1.58!ZNF323;;chr5:178322893..178322931,+!p1@ZFP2!0.21!1.33!ZFP2;;chr10:94449649..94449664,+!p3@HHEX!0.21!1.33!HHEX;;chr12:56401175..56401225,+!p3@IKZF4!0.21!1.33!IKZF4;;chr19:20011731..20011743,+!p3@ZNF93!0.21!1.09!ZNF93;;chr20:52210338..52210352,-!p4@ZNF217!0.21!0.97!ZNF217;;chr19:19303794..19303805,+!p5@RFXANK!0.21!0.85!RFXANK;;chr15:37391614..37391626,-!p18@MEIS2!0.21!0.61!MEIS2;;chr17:46655578..46655589,-!p4@HOXB4!0.21!0.61!HOXB4;;chr17:46703240..46703257,-!p6@HOXB9!0.21!0.61!HOXB9;;chr17:48045917..48045977,+!p1@DLX4!0.21!0.61!DLX4;;chr18:55102628..55102646,+!p2@ONECUT2!0.21!0.61!ONECUT2;;chr19:38720356..38720369,-!p4@DPF1!0.21!0.61!DPF1;;chr19:50529307..50529323,+!p3@ZNF473!0.21!0.61!ZNF473;;chr1:3569101..3569115,+!p2@TP73!0.21!0.61!TP73;;chr1:3569135..3569150,+!p3@TP73!0.21!0.61!TP73;;chr1:8763394..8763399,-!p34@RERE!0.21!0.61!RERE;;chr20:2673369..2673382,+!p2@EBF4!0.21!0.61!EBF4;;chr6:21597499..21597513,+!p16@SOX4!0.21!0.61!SOX4;;chr7:21468134..21468143,+!p6@SP4!0.21!0.61!SP4;;chr8:144512897..144512903,-!p1@MAFA!0.21!0.61!MAFA;;chr8:30891078..30891128,-!p2@PURG!0.21!0.61!PURG;;chr2:176987441..176987454,+!p1@HOXD9!0.21!0.61!HOXD9;;chr2:176995011..176995029,+!p6@HOXD8!0.21!0.61!HOXD8;;chr2:200322259..200322280,-!p5@SATB2!0.21!0.61!SATB2;;chr3:181430496..181430506,+!p6@SOX2!0.21!0.61!SOX2;;chr3:25469815..25469866,+!p3@RARB!0.21!0.61!RARB;;chr10:102505312..102505320,+!p6@PAX2!0.21!0.61!PAX2;;chr11:31832610..31832639,-!p5@PAX6!0.21!0.61!PAX6;;chr11:64764402..64764413,-!p2@BATF2!0.21!0.61!BATF2;;chr11:8040739..8040815,+!p4@TUB!0.21!0.61!TUB;;chr12:54332608..54332636,+!p1@HOXC13!0.21!0.61!HOXC13;;chr12:54379477..54379498,+!p5@HOXC5!0.21!0.61!HOXC5;;chr13:100633726..100633749,+!p6@ZIC2!0.21!0.61!ZIC2;;chr14:33408057..33408068,+!p9@NPAS3!0.21!0.61!NPAS3;;chr14:45722418..45722426,-!p6@MIS18BP1!0.21!0.61!MIS18BP1;;chr9:14308004..14308041,-!p14@NFIB!0.21!0.61!NFIB;;chr9:14314946..14314983,-!p8@NFIB!0.21!0.61!NFIB;;chr19:6424813..6424835,-!p1@KHSRP!0.20!88.47!KHSRP;;chr19:56154958..56155027,+!p1@ZNF581!0.20!47.33!ZNF581;;chr19:58331088..58331106,+!p1@ZNF587!0.20!19.66!ZNF587;;chr6:155635583..155635644,-!p1@TFB1M!0.20!18.08!TFB1M;;chr7:44925044..44925156,-!p1@PURB!0.20!10.80!PURB;;chr19:58740266..58740297,+!p1@ZNF544!0.20!9.71!ZNF544;;chr6:33422343..33422394,+!p1@ZBTB9!0.20!8.86!ZBTB9;;chr16:3450963..3451019,-!p1@ZNF434!0.20!8.13!ZNF434;;chr19:52511437..52511490,-!p1@ZNF615!0.20!7.65!ZNF615;;chr15:57025759..57025811,-!p2@ZNF280D!0.20!6.67!ZNF280D;;chr17:41322281..41322328,-!p2@BRCA1!0.20!3.40!BRCA1;;chr19:37341160..37341194,-!p2@ZNF790!0.20!2.31!ZNF790;;chr1:249153114..249153175,-!p3@ZNF692!0.20!1.94!ZNF692;;chr12:52430894..52430952,+!p3@NR4A1!0.20!1.94!NR4A1;;chr3:178789622..178789633,-!p3@ZMAT3!0.20!1.94!ZMAT3;; | ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316 | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10810-111A9 | |id=FF:10810-111A9 | ||
|is_a=DOID:7;;EFO:0002091;;FF:0000210;;FF:0100167;;UBERON:0001235 | |is_a=DOID:7;;EFO:0002091;;FF:0000210;;FF:0100167;;UBERON:0001235 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11893 | |||
|library_id_phase_based=2:CNhs11893 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10810 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10810 | |||
|name=adrenal cortex adenocarcinoma cell line:SW-13 | |name=adrenal cortex adenocarcinoma cell line:SW-13 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11893,LSID830,release010,COMPLETED | |profile_hcage=CNhs11893,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_tube_id=111A9 | |rna_tube_id=111A9 | ||
|rna_weight_ug=145.82925 | |rna_weight_ug=145.82925 | ||
|rnaseq_library_id=RDhi10088 | |||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb9069 | |sample_cell_catalog=jcrb9069 | ||
|sample_cell_line=SW-13 | |sample_cell_line=SW-13 | ||
| Line 79: | Line 103: | ||
|top_motifs=NRF1:2.27862748454;ELK1,4_GABP{A,B1}:1.985631442;CRX:1.7582384136;PPARG:1.71771821788;ZNF143:1.66885138691;NANOG:1.59145877697;NFY{A,B,C}:1.48400984147;VSX1,2:1.4415073775;GFI1:1.42292769238;PAX8:1.33369678592;E2F1..5:1.27153384789;TFDP1:1.22193738226;ALX1:1.21437588511;NKX2-3_NKX2-5:1.13734680921;PAX4:1.03704747859;POU1F1:1.00782782659;PBX1:1.0006606723;STAT1,3:0.989935733115;PAX1,9:0.971228801936;HOX{A6,A7,B6,B7}:0.940686148101;ONECUT1,2:0.924556431255;RFX1:0.842219889962;LHX3,4:0.794525910687;NKX6-1,2:0.779049531738;AIRE:0.712896675565;MYB:0.687919078819;ARID5B:0.666041896853;SOX17:0.665622536125;FOXQ1:0.650281064083;HOX{A4,D4}:0.62747508164;YY1:0.609377861381;HIC1:0.575928284826;BREu{core}:0.527811037255;EVI1:0.52740722478;HOX{A5,B5}:0.521647003832;T:0.51258467067;OCT4_SOX2{dimer}:0.508162970826;RBPJ:0.504747158101;TEF:0.479186654898;GATA6:0.422979278139;PRRX1,2:0.412242125126;FOX{I1,J2}:0.393944226519;SOX{8,9,10}:0.369738148203;CDX1,2,4:0.34717279035;STAT5{A,B}:0.341224537571;HMGA1,2:0.340026803484;ZNF384:0.324903456898;FOXM1:0.315842855118;PAX3,7:0.31193649109;EN1,2:0.287810239912;LEF1_TCF7_TCF7L1,2:0.238259655838;NR5A1,2:0.23599108503;NR6A1:0.232352583208;PITX1..3:0.230534913895;ADNP_IRX_SIX_ZHX:0.20503996838;HNF4A_NR2F1,2:0.201895179425;HBP1_HMGB_SSRP1_UBTF:0.195633473582;HSF1,2:0.19375550215;ZFP161:0.193192537261;CUX2:0.178879855849;IKZF1:0.163349275795;IKZF2:0.15612287272;ZEB1:0.122591524536;SP1:0.101966626926;POU6F1:0.0815153974945;POU2F1..3:0.0708605350342;KLF4:0.024201833253;HAND1,2:0.0238503015365;FOXA2:0.0234841442728;SREBF1,2:0.0193419295879;GCM1,2:0.0191830657247;ATF5_CREB3:0.0181135623924;EGR1..3:0.00705710380978;REST:-0.0127749997867;GFI1B:-0.0308193546161;DMAP1_NCOR{1,2}_SMARC:-0.0338030648298;FOXP3:-0.034142922726;FOXN1:-0.0351303595437;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0472635458934;TFAP2B:-0.0666832776353;GTF2A1,2:-0.0669982645724;FOXP1:-0.0917479459679;TEAD1:-0.100222540673;ESRRA:-0.137829752094;CREB1:-0.154027163687;NKX2-1,4:-0.176115219049;CDC5L:-0.188492686843;TGIF1:-0.202828175553;FOXL1:-0.202949713015;PATZ1:-0.210510669909;RORA:-0.22704028649;SNAI1..3:-0.232088131984;RUNX1..3:-0.236151959085;ZBTB16:-0.246925452666;ZBTB6:-0.250108087985;HNF1A:-0.278300423534;HOXA9_MEIS1:-0.295303419132;HES1:-0.299229777288;RREB1:-0.310055607252;LMO2:-0.311009450182;AHR_ARNT_ARNT2:-0.313463560235;MYOD1:-0.316670320503;ELF1,2,4:-0.320718485869;NKX3-2:-0.322538958081;NFKB1_REL_RELA:-0.331498011717;PDX1:-0.337506078281;DBP:-0.351429109429;NFE2L2:-0.352774883809;TP53:-0.365037590395;POU3F1..4:-0.366016290037;UFEwm:-0.376395808771;bHLH_family:-0.382753997328;SOX2:-0.402873682212;MEF2{A,B,C,D}:-0.408263600642;XBP1:-0.417406332081;RXR{A,B,G}:-0.418685953327;MZF1:-0.421304539278;RFX2..5_RFXANK_RFXAP:-0.42856818849;FOS_FOS{B,L1}_JUN{B,D}:-0.435341449237;FOSL2:-0.46819096424;PAX5:-0.488814274748;PRDM1:-0.49193060081;JUN:-0.501841414196;SRF:-0.505948888139;NFE2L1:-0.509627603754;SPIB:-0.517863626108;ATF2:-0.531757509433;PAX6:-0.534515220097;SPI1:-0.538085217915;AR:-0.553623713032;NR3C1:-0.554478689406;NANOG{mouse}:-0.556788391002;NFE2:-0.558162707072;ATF4:-0.567365997577;TOPORS:-0.568884427105;HLF:-0.569962065265;BACH2:-0.582818900429;XCPE1{core}:-0.588466373635;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.590255472496;NHLH1,2:-0.601935297364;MED-1{core}:-0.630420764188;TAL1_TCF{3,4,12}:-0.66239441003;MTE{core}:-0.674738961763;PAX2:-0.684924230513;ZIC1..3:-0.695608010784;SOX5:-0.698298079247;FOX{D1,D2}:-0.705943006118;ZNF148:-0.722138068552;GATA4:-0.724766687438;FOXD3:-0.736998487825;TLX1..3_NFIC{dimer}:-0.753965875352;ESR1:-0.757668310934;GTF2I:-0.776778810093;MYBL2:-0.783153215615;NKX3-1:-0.785376893874;POU5F1:-0.79111070154;NFIX:-0.793899730809;MTF1:-0.886437397112;ALX4:-0.891560767863;FOXO1,3,4:-0.915868690151;BPTF:-0.933167230516;ETS1,2:-0.940395531867;NFIL3:-0.941591272632;FOX{F1,F2,J1}:-0.962486661269;NKX2-2,8:-0.970981838627;IRF7:-0.974314450478;TFAP2{A,C}:-0.994624285089;MYFfamily:-1.04265004254;ZNF423:-1.06032027298;NFATC1..3:-1.0692906736;TLX2:-1.07670625323;SPZ1:-1.08479737025;GLI1..3:-1.10203362322;CEBPA,B_DDIT3:-1.13242628214;ZNF238:-1.13468500785;EP300:-1.14577049006;NR1H4:-1.17165450435;TFAP4:-1.21307014736;IRF1,2:-1.26273301411;STAT2,4,6:-1.26410828874;EBF1:-1.27638544596;MAZ:-1.29028614029;TFCP2:-1.3371682509;ATF6:-1.35026832235;HMX1:-1.35042397375;GZF1:-1.35566603468;HIF1A:-1.38977492823;SMAD1..7,9:-1.53097223013;TBP:-1.59874586588;RXRA_VDR{dimer}:-1.65517122003;MAFB:-1.73823918554;TBX4,5:-1.96209347971 | |top_motifs=NRF1:2.27862748454;ELK1,4_GABP{A,B1}:1.985631442;CRX:1.7582384136;PPARG:1.71771821788;ZNF143:1.66885138691;NANOG:1.59145877697;NFY{A,B,C}:1.48400984147;VSX1,2:1.4415073775;GFI1:1.42292769238;PAX8:1.33369678592;E2F1..5:1.27153384789;TFDP1:1.22193738226;ALX1:1.21437588511;NKX2-3_NKX2-5:1.13734680921;PAX4:1.03704747859;POU1F1:1.00782782659;PBX1:1.0006606723;STAT1,3:0.989935733115;PAX1,9:0.971228801936;HOX{A6,A7,B6,B7}:0.940686148101;ONECUT1,2:0.924556431255;RFX1:0.842219889962;LHX3,4:0.794525910687;NKX6-1,2:0.779049531738;AIRE:0.712896675565;MYB:0.687919078819;ARID5B:0.666041896853;SOX17:0.665622536125;FOXQ1:0.650281064083;HOX{A4,D4}:0.62747508164;YY1:0.609377861381;HIC1:0.575928284826;BREu{core}:0.527811037255;EVI1:0.52740722478;HOX{A5,B5}:0.521647003832;T:0.51258467067;OCT4_SOX2{dimer}:0.508162970826;RBPJ:0.504747158101;TEF:0.479186654898;GATA6:0.422979278139;PRRX1,2:0.412242125126;FOX{I1,J2}:0.393944226519;SOX{8,9,10}:0.369738148203;CDX1,2,4:0.34717279035;STAT5{A,B}:0.341224537571;HMGA1,2:0.340026803484;ZNF384:0.324903456898;FOXM1:0.315842855118;PAX3,7:0.31193649109;EN1,2:0.287810239912;LEF1_TCF7_TCF7L1,2:0.238259655838;NR5A1,2:0.23599108503;NR6A1:0.232352583208;PITX1..3:0.230534913895;ADNP_IRX_SIX_ZHX:0.20503996838;HNF4A_NR2F1,2:0.201895179425;HBP1_HMGB_SSRP1_UBTF:0.195633473582;HSF1,2:0.19375550215;ZFP161:0.193192537261;CUX2:0.178879855849;IKZF1:0.163349275795;IKZF2:0.15612287272;ZEB1:0.122591524536;SP1:0.101966626926;POU6F1:0.0815153974945;POU2F1..3:0.0708605350342;KLF4:0.024201833253;HAND1,2:0.0238503015365;FOXA2:0.0234841442728;SREBF1,2:0.0193419295879;GCM1,2:0.0191830657247;ATF5_CREB3:0.0181135623924;EGR1..3:0.00705710380978;REST:-0.0127749997867;GFI1B:-0.0308193546161;DMAP1_NCOR{1,2}_SMARC:-0.0338030648298;FOXP3:-0.034142922726;FOXN1:-0.0351303595437;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0472635458934;TFAP2B:-0.0666832776353;GTF2A1,2:-0.0669982645724;FOXP1:-0.0917479459679;TEAD1:-0.100222540673;ESRRA:-0.137829752094;CREB1:-0.154027163687;NKX2-1,4:-0.176115219049;CDC5L:-0.188492686843;TGIF1:-0.202828175553;FOXL1:-0.202949713015;PATZ1:-0.210510669909;RORA:-0.22704028649;SNAI1..3:-0.232088131984;RUNX1..3:-0.236151959085;ZBTB16:-0.246925452666;ZBTB6:-0.250108087985;HNF1A:-0.278300423534;HOXA9_MEIS1:-0.295303419132;HES1:-0.299229777288;RREB1:-0.310055607252;LMO2:-0.311009450182;AHR_ARNT_ARNT2:-0.313463560235;MYOD1:-0.316670320503;ELF1,2,4:-0.320718485869;NKX3-2:-0.322538958081;NFKB1_REL_RELA:-0.331498011717;PDX1:-0.337506078281;DBP:-0.351429109429;NFE2L2:-0.352774883809;TP53:-0.365037590395;POU3F1..4:-0.366016290037;UFEwm:-0.376395808771;bHLH_family:-0.382753997328;SOX2:-0.402873682212;MEF2{A,B,C,D}:-0.408263600642;XBP1:-0.417406332081;RXR{A,B,G}:-0.418685953327;MZF1:-0.421304539278;RFX2..5_RFXANK_RFXAP:-0.42856818849;FOS_FOS{B,L1}_JUN{B,D}:-0.435341449237;FOSL2:-0.46819096424;PAX5:-0.488814274748;PRDM1:-0.49193060081;JUN:-0.501841414196;SRF:-0.505948888139;NFE2L1:-0.509627603754;SPIB:-0.517863626108;ATF2:-0.531757509433;PAX6:-0.534515220097;SPI1:-0.538085217915;AR:-0.553623713032;NR3C1:-0.554478689406;NANOG{mouse}:-0.556788391002;NFE2:-0.558162707072;ATF4:-0.567365997577;TOPORS:-0.568884427105;HLF:-0.569962065265;BACH2:-0.582818900429;XCPE1{core}:-0.588466373635;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.590255472496;NHLH1,2:-0.601935297364;MED-1{core}:-0.630420764188;TAL1_TCF{3,4,12}:-0.66239441003;MTE{core}:-0.674738961763;PAX2:-0.684924230513;ZIC1..3:-0.695608010784;SOX5:-0.698298079247;FOX{D1,D2}:-0.705943006118;ZNF148:-0.722138068552;GATA4:-0.724766687438;FOXD3:-0.736998487825;TLX1..3_NFIC{dimer}:-0.753965875352;ESR1:-0.757668310934;GTF2I:-0.776778810093;MYBL2:-0.783153215615;NKX3-1:-0.785376893874;POU5F1:-0.79111070154;NFIX:-0.793899730809;MTF1:-0.886437397112;ALX4:-0.891560767863;FOXO1,3,4:-0.915868690151;BPTF:-0.933167230516;ETS1,2:-0.940395531867;NFIL3:-0.941591272632;FOX{F1,F2,J1}:-0.962486661269;NKX2-2,8:-0.970981838627;IRF7:-0.974314450478;TFAP2{A,C}:-0.994624285089;MYFfamily:-1.04265004254;ZNF423:-1.06032027298;NFATC1..3:-1.0692906736;TLX2:-1.07670625323;SPZ1:-1.08479737025;GLI1..3:-1.10203362322;CEBPA,B_DDIT3:-1.13242628214;ZNF238:-1.13468500785;EP300:-1.14577049006;NR1H4:-1.17165450435;TFAP4:-1.21307014736;IRF1,2:-1.26273301411;STAT2,4,6:-1.26410828874;EBF1:-1.27638544596;MAZ:-1.29028614029;TFCP2:-1.3371682509;ATF6:-1.35026832235;HMX1:-1.35042397375;GZF1:-1.35566603468;HIF1A:-1.38977492823;SMAD1..7,9:-1.53097223013;TBP:-1.59874586588;RXRA_VDR{dimer}:-1.65517122003;MAFB:-1.73823918554;TBX4,5:-1.96209347971 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10810-111A9;search_select_hide=table117:FF:10810-111A9 | |||
}} | }} | ||
Latest revision as of 15:06, 3 June 2020
| Name: | adrenal cortex adenocarcinoma cell line:SW-13 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11893 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11893
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11893
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.93 |
| 10 | 10 | 0.782 |
| 100 | 100 | 0.474 |
| 101 | 101 | 0.806 |
| 102 | 102 | 0.656 |
| 103 | 103 | 0.446 |
| 104 | 104 | 0.666 |
| 105 | 105 | 0.575 |
| 106 | 106 | 1.176e-7 |
| 107 | 107 | 0.00217 |
| 108 | 108 | 0.533 |
| 109 | 109 | 0.563 |
| 11 | 11 | 0.623 |
| 110 | 110 | 0.87 |
| 111 | 111 | 0.825 |
| 112 | 112 | 0.00651 |
| 113 | 113 | 0.0486 |
| 114 | 114 | 0.234 |
| 115 | 115 | 0.399 |
| 116 | 116 | 0.733 |
| 117 | 117 | 0.966 |
| 118 | 118 | 0.327 |
| 119 | 119 | 0.814 |
| 12 | 12 | 0.709 |
| 120 | 120 | 0.857 |
| 121 | 121 | 0.297 |
| 122 | 122 | 0.81 |
| 123 | 123 | 0.914 |
| 124 | 124 | 0.59 |
| 125 | 125 | 0.733 |
| 126 | 126 | 0.97 |
| 127 | 127 | 0.773 |
| 128 | 128 | 0.00213 |
| 129 | 129 | 0.745 |
| 13 | 13 | 0.953 |
| 130 | 130 | 0.0235 |
| 131 | 131 | 0.0316 |
| 132 | 132 | 0.585 |
| 133 | 133 | 0.117 |
| 134 | 134 | 0.0785 |
| 135 | 135 | 0.0212 |
| 136 | 136 | 0.268 |
| 137 | 137 | 0.276 |
| 138 | 138 | 0.422 |
| 139 | 139 | 0.025 |
| 14 | 14 | 0.471 |
| 140 | 140 | 0.0534 |
| 141 | 141 | 0.56 |
| 142 | 142 | 0.976 |
| 143 | 143 | 0.169 |
| 144 | 144 | 0.95 |
| 145 | 145 | 0.638 |
| 146 | 146 | 0.389 |
| 147 | 147 | 0.89 |
| 148 | 148 | 0.00466 |
| 149 | 149 | 0.0553 |
| 15 | 15 | 0.417 |
| 150 | 150 | 0.276 |
| 151 | 151 | 0.247 |
| 152 | 152 | 0.029 |
| 153 | 153 | 0.534 |
| 154 | 154 | 0.7 |
| 155 | 155 | 0.672 |
| 156 | 156 | 0.736 |
| 157 | 157 | 0.277 |
| 158 | 158 | 0.746 |
| 159 | 159 | 0.421 |
| 16 | 16 | 0.352 |
| 160 | 160 | 0.197 |
| 161 | 161 | 0.774 |
| 162 | 162 | 0.784 |
| 163 | 163 | 0.0641 |
| 164 | 164 | 0.441 |
| 165 | 165 | 0.186 |
| 166 | 166 | 0.124 |
| 167 | 167 | 0.142 |
| 168 | 168 | 0.114 |
| 169 | 169 | 0.0129 |
| 17 | 17 | 0.155 |
| 18 | 18 | 0.0719 |
| 19 | 19 | 0.072 |
| 2 | 2 | 0.0501 |
| 20 | 20 | 0.247 |
| 21 | 21 | 0.468 |
| 22 | 22 | 0.18 |
| 23 | 23 | 0.0032 |
| 24 | 24 | 0.886 |
| 25 | 25 | 0.634 |
| 26 | 26 | 0.456 |
| 27 | 27 | 0.124 |
| 28 | 28 | 0.899 |
| 29 | 29 | 0.751 |
| 3 | 3 | 0.363 |
| 30 | 30 | 0.453 |
| 31 | 31 | 0.677 |
| 32 | 32 | 0.0325 |
| 33 | 33 | 0.776 |
| 34 | 34 | 0.333 |
| 35 | 35 | 0.798 |
| 36 | 36 | 0.235 |
| 37 | 37 | 0.15 |
| 38 | 38 | 0.56 |
| 39 | 39 | 0.439 |
| 4 | 4 | 0.208 |
| 40 | 40 | 0.316 |
| 41 | 41 | 0.408 |
| 42 | 42 | 0.823 |
| 43 | 43 | 0.199 |
| 44 | 44 | 0.665 |
| 45 | 45 | 0.323 |
| 46 | 46 | 0.109 |
| 47 | 47 | 0.789 |
| 48 | 48 | 0.932 |
| 49 | 49 | 0.472 |
| 5 | 5 | 0.357 |
| 50 | 50 | 0.768 |
| 51 | 51 | 0.744 |
| 52 | 52 | 0.00476 |
| 53 | 53 | 0.351 |
| 54 | 54 | 0.603 |
| 55 | 55 | 0.766 |
| 56 | 56 | 0.577 |
| 57 | 57 | 0.978 |
| 58 | 58 | 0.142 |
| 59 | 59 | 0.0635 |
| 6 | 6 | 0.967 |
| 60 | 60 | 0.00138 |
| 61 | 61 | 0.835 |
| 62 | 62 | 0.0736 |
| 63 | 63 | 0.205 |
| 64 | 64 | 0.82 |
| 65 | 65 | 0.058 |
| 66 | 66 | 0.00976 |
| 67 | 67 | 0.806 |
| 68 | 68 | 0.039 |
| 69 | 69 | 0.72 |
| 7 | 7 | 0.787 |
| 70 | 70 | 0.338 |
| 71 | 71 | 0.163 |
| 72 | 72 | 0.181 |
| 73 | 73 | 0.177 |
| 74 | 74 | 0.435 |
| 75 | 75 | 0.862 |
| 76 | 76 | 0.714 |
| 77 | 77 | 0.0911 |
| 78 | 78 | 0.56 |
| 79 | 79 | 0.327 |
| 8 | 8 | 0.477 |
| 80 | 80 | 0.0662 |
| 81 | 81 | 0.45 |
| 82 | 82 | 0.0935 |
| 83 | 83 | 0.575 |
| 84 | 84 | 0.528 |
| 85 | 85 | 0.00418 |
| 86 | 86 | 0.427 |
| 87 | 87 | 0.667 |
| 88 | 88 | 0.614 |
| 89 | 89 | 0.28 |
| 9 | 9 | 0.0861 |
| 90 | 90 | 0.492 |
| 91 | 91 | 0.00716 |
| 92 | 92 | 0.161 |
| 93 | 93 | 0.231 |
| 94 | 94 | 0.141 |
| 95 | 95 | 0.167 |
| 96 | 96 | 0.394 |
| 97 | 97 | 0.808 |
| 98 | 98 | 0.728 |
| 99 | 99 | 0.665 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11893
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:7 disease of anatomical entity
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100167 adenocarcinoma cell line sample
UBERON:0001235 adrenal cortex
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
299 (adenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002369 (adrenal gland)
0002100 (trunk)
0001851 (cortex)
0001235 (adrenal cortex)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
