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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001043,UBERON:0002100,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0009569,UBERON:0005291,UBERON:0005178,UBERON:0005177,UBERON:0003104,UBERON:0000464,UBERON:0000925,UBERON:0005181,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0007026,UBERON:0001041,UBERON:0002224,UBERON:0000915,UBERON:0009142,UBERON:0006595,UBERON:0006603,UBERON:0009143
|DRA_sample_Accession=CAGE@SAMD00005367
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000220,CL:0000004,CL:0000255,CL:0002076,CL:0002251,CL:0002252,CL:0000223
|accession_numbers=CAGE;DRX008300;DRR009172;DRZ000597;DRZ001982;DRZ011947;DRZ013332
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0005933,UBERON:0005942,UBERON:0002416,UBERON:0005932
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0002559,CL:0002561
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000072,FF:0000001,FF:0000075
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr15:42749722..42749739,-!p2@ZFP106!1.83!116.94!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.62!46.20!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.60!119.11!TWIST2;;chr2:19558373..19558392,-!p1@OSR1!1.54!90.23!OSR1;;chr7:19157248..19157268,-!p1@TWIST1!1.51!85.18!TWIST1;;chr19:13134772..13134822,+!p2@NFIX!1.42!36.82!NFIX;;chr15:57511609..57511651,+!p2@TCF12!1.38!38.26!TCF12;;chr8:49833948..49833973,-!p2@SNAI2!1.33!125.61!SNAI2;;chr6:45296048..45296082,+!p1@RUNX2!1.33!23.10!RUNX2;;chr2:96012397..96012417,+!p3@KCNIP3!1.25!16.60!KCNIP3;;chr1:170633348..170633399,+!p2@PRRX1!1.24!22.38!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.23!27.43!TWIST2;;chr12:54402745..54402788,+!p1@HOXC8!1.21!15.16!HOXC8;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.44!HOXD8;;chr19:46801639..46801699,+!p1@HIF3A!1.19!14.44!HIF3A;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.80!DRAP1;;chr14:61116183..61116208,-!p1@SIX1!1.17!51.98!SIX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.15!15.88!ZBTB38;;chr2:95963052..95963106,+!p1@KCNIP3!1.15!12.99!KCNIP3;;chr2:96012757..96012779,+!p8@KCNIP3!1.15!12.99!KCNIP3;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.72!PRRX1;;chr3:147139053..147139112,+!p5@ZIC1!1.12!12.27!ZIC1;;chr7:35293685..35293718,-!p1@TBX20!1.12!12.27!TBX20;;chr11:46299199..46299233,+!p1@CREB3L1!1.10!59.92!CREB3L1;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.55!HAND2;;chr1:170633262..170633285,+!p3@PRRX1!1.09!12.99!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.77!CREB3L1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.83!TCF21;;chr5:158526917..158526932,-!p1@EBF1!1.05!25.99!EBF1;;chr11:65686802..65686818,+!p6@DRAP1!1.05!18.05!DRAP1;;chr6:108977520..108977534,+!p7@FOXO3!1.05!10.11!FOXO3;;chr2:119605214..119605230,-!p1@EN1!1.05!10.11!EN1;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.44!ZBTB16;;chr3:157823517..157823562,-!p1@SHOX2!1.04!10.83!SHOX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.03!37.54!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!1.03!24.54!TWIST1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.02!9.38!RUNX1T1;;chr3:141121847..141121868,+!p5@ZBTB38!1.00!13.72!ZBTB38;;chr8:49833978..49833996,-!p1@SNAI2!0.99!185.52!SNAI2;;chr17:46675420..46675465,-!p3@HOXB6!0.99!10.11!HOXB6;;chr11:46299443..46299459,+!p4@CREB3L1!0.99!8.66!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.66!HOXC9;;chr3:147127142..147127168,+!p1@ZIC1!0.99!8.66!ZIC1;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.94!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!0.95!7.94!ZIC1;;chr1:170632250..170632277,+!p7@PRRX1!0.95!7.94!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.95!7.94!HOXC5;;chr8:93074848..93074871,-!p3@RUNX1T1!0.95!7.94!RUNX1T1;;chr19:45971246..45971265,+!p1@FOSB!0.93!145.82!FOSB;;chr2:96012353..96012378,+!p4@KCNIP3!0.91!7.22!KCNIP3;;chr16:31076332..31076388,-!p3@ZNF668!0.91!7.22!ZNF668;;chr13:45151259..45151326,-!p2@TSC22D1!0.89!42.59!TSC22D1;;chrX:106960285..106960299,-!p1@TSC22D3!0.88!186.97!TSC22D3;;chr6:85474299..85474324,-!p1@TBX18!0.88!12.27!TBX18;;chr19:13136130..13136165,+!p6@NFIX!0.87!8.66!NFIX;;chr1:23696448..23696453,-!p5@ZNF436!0.87!7.94!ZNF436;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.50!PRRX1;;chr15:57511589..57511608,+!p4@TCF12!0.87!6.50!TCF12;;chr11:44331576..44331650,-!p1@ALX4!0.87!6.50!ALX4;;chr3:138665937..138665968,-!p1@FOXL2!0.87!6.50!FOXL2;;chr14:24837368..24837401,+!p1@NFATC4!0.86!15.16!NFATC4;;chr17:17726907..17726958,-!p2@SREBF1!0.84!38.98!SREBF1;;chr19:13134457..13134462,+!p5@NFIX!0.84!10.83!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!0.84!7.94!PRRX2;;chr10:63809013..63809041,+!p3@ARID5B!0.83!34.65!ARID5B;;chr10:77161533..77161546,-!p2@ZNF503!0.83!24.54!ZNF503;;chr10:45495946..45495976,+!p2@ZNF22!0.83!5.78!ZNF22;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.78!PRRX2;;chr15:67391010..67391046,+!p13@SMAD3!0.83!5.78!SMAD3;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.65!DRAP1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.80!412.92!TAX1BP3;;chr3:178789522..178789564,-!p2@ZMAT3!0.79!41.15!ZMAT3;;chr6:85473156..85473210,-!p2@TBX18!0.79!6.50!TBX18;;chr5:92918956..92918969,+!p4@NR2F1!0.79!5.78!NR2F1;;chr5:321810..321877,+!p1@AHRR!0.78!17.33!AHRR;;chr20:55204351..55204377,+!p1@TFAP2C!0.78!6.50!TFAP2C;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.78!NR1H3;;chr12:54394309..54394336,+!p2@HOXC9!0.78!5.05!HOXC9;;chr12:54447637..54447659,+!p4@HOXC4!0.78!5.05!HOXC4;;chr1:170632137..170632172,+!p10@PRRX1!0.78!5.05!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.78!5.05!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.05!KDM5D;;chr10:31607702..31607755,+!p3@ZEB1!0.77!5.78!ZEB1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.76!58.47!TAX1BP3;;chr12:53614115..53614154,-!p1@RARG!0.76!28.15!RARG;;chr17:46621937..46621966,-!p2@HOXB2!0.76!13.72!HOXB2;;chr1:23696308..23696339,-!p2@ZNF436!0.76!10.83!ZNF436;;chr17:46688334..46688385,-!p1@HOXB7!0.76!7.22!HOXB7;;chr1:158985469..158985489,+!p7@IFI16!0.76!5.78!IFI16;;chr20:39317868..39317884,-!p1@MAFB!0.74!59.92!MAFB;;chr15:42743341..42743377,-!p3@ZFP106!0.74!7.94!ZFP106;;chr21:36421535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|expression_enrichment_score=chr15:42749722..42749739,-!p2@ZFP106!1.83!116.94!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.62!46.20!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.60!119.11!TWIST2;;chr2:19558373..19558392,-!p1@OSR1!1.54!90.23!OSR1;;chr7:19157248..19157268,-!p1@TWIST1!1.51!85.18!TWIST1;;chr19:13134772..13134822,+!p2@NFIX!1.42!36.82!NFIX;;chr15:57511609..57511651,+!p2@TCF12!1.38!38.26!TCF12;;chr8:49833948..49833973,-!p2@SNAI2!1.33!125.61!SNAI2;;chr6:45296048..45296082,+!p1@RUNX2!1.33!23.10!RUNX2;;chr2:96012397..96012417,+!p3@KCNIP3!1.25!16.60!KCNIP3;;chr1:170633348..170633399,+!p2@PRRX1!1.24!22.38!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.23!27.43!TWIST2;;chr12:54402745..54402788,+!p1@HOXC8!1.21!15.16!HOXC8;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.44!HOXD8;;chr19:46801639..46801699,+!p1@HIF3A!1.19!14.44!HIF3A;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.80!DRAP1;;chr14:61116183..61116208,-!p1@SIX1!1.17!51.98!SIX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.15!15.88!ZBTB38;;chr2:95963052..95963106,+!p1@KCNIP3!1.15!12.99!KCNIP3;;chr2:96012757..96012779,+!p8@KCNIP3!1.15!12.99!KCNIP3;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.72!PRRX1;;chr3:147139053..147139112,+!p5@ZIC1!1.12!12.27!ZIC1;;chr7:35293685..35293718,-!p1@TBX20!1.12!12.27!TBX20;;chr11:46299199..46299233,+!p1@CREB3L1!1.10!59.92!CREB3L1;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.55!HAND2;;chr1:170633262..170633285,+!p3@PRRX1!1.09!12.99!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.77!CREB3L1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.83!TCF21;;chr5:158526917..158526932,-!p1@EBF1!1.05!25.99!EBF1;;chr11:65686802..65686818,+!p6@DRAP1!1.05!18.05!DRAP1;;chr6:108977520..108977534,+!p7@FOXO3!1.05!10.11!FOXO3;;chr2:119605214..119605230,-!p1@EN1!1.05!10.11!EN1;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.44!ZBTB16;;chr3:157823517..157823562,-!p1@SHOX2!1.04!10.83!SHOX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.03!37.54!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!1.03!24.54!TWIST1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.02!9.38!RUNX1T1;;chr3:141121847..141121868,+!p5@ZBTB38!1.00!13.72!ZBTB38;;chr8:49833978..49833996,-!p1@SNAI2!0.99!185.52!SNAI2;;chr17:46675420..46675465,-!p3@HOXB6!0.99!10.11!HOXB6;;chr11:46299443..46299459,+!p4@CREB3L1!0.99!8.66!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.66!HOXC9;;chr3:147127142..147127168,+!p1@ZIC1!0.99!8.66!ZIC1;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.94!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!0.95!7.94!ZIC1;;chr1:170632250..170632277,+!p7@PRRX1!0.95!7.94!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.95!7.94!HOXC5;;chr8:93074848..93074871,-!p3@RUNX1T1!0.95!7.94!RUNX1T1;;chr19:45971246..45971265,+!p1@FOSB!0.93!145.82!FOSB;;chr2:96012353..96012378,+!p4@KCNIP3!0.91!7.22!KCNIP3;;chr16:31076332..31076388,-!p3@ZNF668!0.91!7.22!ZNF668;;chr13:45151259..45151326,-!p2@TSC22D1!0.89!42.59!TSC22D1;;chrX:106960285..106960299,-!p1@TSC22D3!0.88!186.97!TSC22D3;;chr6:85474299..85474324,-!p1@TBX18!0.88!12.27!TBX18;;chr19:13136130..13136165,+!p6@NFIX!0.87!8.66!NFIX;;chr1:23696448..23696453,-!p5@ZNF436!0.87!7.94!ZNF436;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.50!PRRX1;;chr15:57511589..57511608,+!p4@TCF12!0.87!6.50!TCF12;;chr11:44331576..44331650,-!p1@ALX4!0.87!6.50!ALX4;;chr3:138665937..138665968,-!p1@FOXL2!0.87!6.50!FOXL2;;chr14:24837368..24837401,+!p1@NFATC4!0.86!15.16!NFATC4;;chr17:17726907..17726958,-!p2@SREBF1!0.84!38.98!SREBF1;;chr19:13134457..13134462,+!p5@NFIX!0.84!10.83!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!0.84!7.94!PRRX2;;chr10:63809013..63809041,+!p3@ARID5B!0.83!34.65!ARID5B;;chr10:77161533..77161546,-!p2@ZNF503!0.83!24.54!ZNF503;;chr10:45495946..45495976,+!p2@ZNF22!0.83!5.78!ZNF22;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.78!PRRX2;;chr15:67391010..67391046,+!p13@SMAD3!0.83!5.78!SMAD3;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.65!DRAP1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.80!412.92!TAX1BP3;;chr3:178789522..178789564,-!p2@ZMAT3!0.79!41.15!ZMAT3;;chr6:85473156..85473210,-!p2@TBX18!0.79!6.50!TBX18;;chr5:92918956..92918969,+!p4@NR2F1!0.79!5.78!NR2F1;;chr5:321810..321877,+!p1@AHRR!0.78!17.33!AHRR;;chr20:55204351..55204377,+!p1@TFAP2C!0.78!6.50!TFAP2C;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.78!NR1H3;;chr12:54394309..54394336,+!p2@HOXC9!0.78!5.05!HOXC9;;chr12:54447637..54447659,+!p4@HOXC4!0.78!5.05!HOXC4;;chr1:170632137..170632172,+!p10@PRRX1!0.78!5.05!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.78!5.05!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.05!KDM5D;;chr10:31607702..31607755,+!p3@ZEB1!0.77!5.78!ZEB1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.76!58.47!TAX1BP3;;chr12:53614115..53614154,-!p1@RARG!0.76!28.15!RARG;;chr17:46621937..46621966,-!p2@HOXB2!0.76!13.72!HOXB2;;chr1:23696308..23696339,-!p2@ZNF436!0.76!10.83!ZNF436;;chr17:46688334..46688385,-!p1@HOXB7!0.76!7.22!HOXB7;;chr1:158985469..158985489,+!p7@IFI16!0.76!5.78!IFI16;;chr20:39317868..39317884,-!p1@MAFB!0.74!59.92!MAFB;;chr15:42743341..42743377,-!p3@ZFP106!0.74!7.94!ZFP106;;chr21:36421535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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002559;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002561;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg38.nobarcode.ctss.bed.gz
|id=FF:11584-120F9
|id=FF:11584-120F9
|is_a=EFO:0002091;;FF:0000075
|is_a=EFO:0002091;;FF:0000075
|is_obsolete=
|is_obsolete=
|library_id=CNhs12347
|library_id_phase_based=2:CNhs12347
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11584
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11584
|name=Hair Follicle Outer Root Sheath Cells, donor2
|name=Hair Follicle Outer Root Sheath Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12347,LSID913,release011,COMPLETED
|profile_hcage=CNhs12347,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|rna_catalog_number=SC2425
Line 58: Line 79:
|rna_weight_ug=10
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|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 79: Line 101:
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|top_motifs=GZF1:2.32809217959;ZNF238:2.30962975692;HES1:1.63977214412;ALX4:1.49483077503;RXR{A,B,G}:1.40743101365;FOXL1:1.40003741868;NR3C1:1.38430132718;TFAP4:1.36600453666;ESRRA:1.35290277056;PAX1,9:1.33461997623;EBF1:1.33179442251;UFEwm:1.30982633242;XBP1:1.28663891859;TAL1_TCF{3,4,12}:1.26541521389;RXRA_VDR{dimer}:1.23993734588;GFI1B:1.14017242811;EVI1:1.12629011746;NKX3-1:1.11298217227;ATF6:1.07583806697;NFE2L1:1.05506987718;SPZ1:1.05153163168;ESR1:1.05142894296;NKX2-2,8:0.971061334205;TP53:0.931902164859;EN1,2:0.9283562312;KLF4:0.849297545886;FOXD3:0.82818550294;NFATC1..3:0.801318611195;TFCP2:0.751977379948;HOX{A5,B5}:0.73692483329;FOXO1,3,4:0.70136717724;TEAD1:0.668397736739;MYBL2:0.663885984894;HMX1:0.648408639613;GLI1..3:0.640322546372;MAFB:0.622651504496;NKX3-2:0.616615938204;AIRE:0.614113713414;SRF:0.588343643723;bHLH_family:0.55663849232;HIF1A:0.546171059346;NKX2-1,4:0.529965256685;NFIX:0.511504170152;LHX3,4:0.497914829431;ZBTB6:0.485530762753;YY1:0.480599678382;DMAP1_NCOR{1,2}_SMARC:0.418766412579;SOX17:0.415438105142;ARID5B:0.404103794512;TLX1..3_NFIC{dimer}:0.384243327422;PAX5:0.380893231917;IKZF1:0.380534449891;HMGA1,2:0.373747757623;HOX{A6,A7,B6,B7}:0.373613917546;STAT2,4,6:0.372698033029;HNF4A_NR2F1,2:0.363018337904;HOX{A4,D4}:0.348731214451;HAND1,2:0.34813365862;GTF2A1,2:0.342663488774;NHLH1,2:0.301438103995;AR:0.235266523723;FOXP3:0.224200149914;GCM1,2:0.195613010788;STAT5{A,B}:0.189192999434;GTF2I:0.18674454173;TBP:0.18279430709;ZIC1..3:0.173835026411;MTF1:0.165851014702;HLF:0.1629089404;NR1H4:0.15334221437;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.129774636253;NFE2L2:0.123300114569;ZNF423:0.09908739214;TOPORS:0.0886565390364;POU3F1..4:0.0808181412291;TFAP2{A,C}:0.0718705507479;MYFfamily:0.0549524854081;NR6A1:0.0427658714292;NANOG{mouse}:0.0391378988319;BACH2:0.00983568145706;IRF1,2:0.00602162360272;PAX4:-0.0272429354315;TGIF1:-0.0277160663031;DBP:-0.0367024508427;HNF1A:-0.0424202946242;LEF1_TCF7_TCF7L1,2:-0.0445067672526;NKX6-1,2:-0.0474794057786;PPARG:-0.0782973629762;NFE2:-0.0863083977872;PATZ1:-0.106373038725;ZNF384:-0.110037287894;ZNF148:-0.117539635999;REST:-0.120051037516;SOX5:-0.141970098351;FOS_FOS{B,L1}_JUN{B,D}:-0.142263088782;MEF2{A,B,C,D}:-0.146418519154;RUNX1..3:-0.163448135978;PRDM1:-0.171622434957;HOXA9_MEIS1:-0.183990380486;CEBPA,B_DDIT3:-0.203385632426;MZF1:-0.210839164888;HIC1:-0.212353320442;FOX{D1,D2}:-0.23680896153;PRRX1,2:-0.250187704819;SREBF1,2:-0.251714715065;RFX2..5_RFXANK_RFXAP:-0.265823672521;TBX4,5:-0.269554191577;PDX1:-0.276054368767;FOSL2:-0.279292262393;SMAD1..7,9:-0.279497355316;GFI1:-0.279912033973;ONECUT1,2:-0.325459744615;ELK1,4_GABP{A,B1}:-0.331020403493;FOX{I1,J2}:-0.332263604858;RFX1:-0.334495776598;ZBTB16:-0.33836408131;NFKB1_REL_RELA:-0.342082208808;IRF7:-0.364849275895;GATA4:-0.365671401191;ATF4:-0.390249117335;ETS1,2:-0.406881560074;SP1:-0.411562201591;STAT1,3:-0.418266083038;BPTF:-0.432941077242;NFIL3:-0.440095031793;LMO2:-0.455942665338;HSF1,2:-0.462639930984;TLX2:-0.491339616125;NANOG:-0.495529240251;MAZ:-0.496576183627;ATF5_CREB3:-0.49736479891;XCPE1{core}:-0.507673274051;NR5A1,2:-0.517735250957;RREB1:-0.519741154176;AHR_ARNT_ARNT2:-0.525302989455;NKX2-3_NKX2-5:-0.549388767433;PBX1:-0.554339441227;SPIB:-0.554455889555;CRX:-0.567542038924;ZNF143:-0.575953826798;JUN:-0.578137695128;SPI1:-0.579786729997;NRF1:-0.600363463583;FOXQ1:-0.615819633904;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.618916416866;EGR1..3:-0.650947270943;RORA:-0.653159222954;T:-0.659883781505;TFAP2B:-0.673318406314;ADNP_IRX_SIX_ZHX:-0.68593226675;MTE{core}:-0.725233163998;PAX6:-0.745993074284;SNAI1..3:-0.746180714015;ZFP161:-0.769016916502;PAX2:-0.782527053006;GATA6:-0.785692548904;ELF1,2,4:-0.792937055355;CDX1,2,4:-0.794785075718;MED-1{core}:-0.811057577169;POU5F1:-0.846061899226;TFDP1:-0.860028939386;VSX1,2:-0.864282488362;FOX{F1,F2,J1}:-0.866896204562;PAX8:-0.868791048516;CDC5L:-0.911943009103;OCT4_SOX2{dimer}:-0.923055344703;RBPJ:-0.923998248818;FOXP1:-0.936950040548;ATF2:-0.947708671;FOXN1:-0.955242179033;POU2F1..3:-0.958379272337;CREB1:-0.979005449642;CUX2:-0.983317391668;HBP1_HMGB_SSRP1_UBTF:-0.989411823217;PAX3,7:-1.00360958278;MYOD1:-1.03045245219;NFY{A,B,C}:-1.03525283467;MYB:-1.03897878958;ZEB1:-1.05039987875;IKZF2:-1.05963171624;FOXA2:-1.13221126896;EP300:-1.13494124056;ALX1:-1.22868129666;FOXM1:-1.25089723495;SOX2:-1.25756239186;POU6F1:-1.2661561509;PITX1..3:-1.2661822951;E2F1..5:-1.26761835702;TEF:-1.30207352411;BREu{core}:-1.37787319087;SOX{8,9,10}:-1.54096876759;POU1F1:-2.02865872736
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11584-120F9;search_select_hide=table117:FF:11584-120F9
}}
}}

Latest revision as of 18:10, 4 June 2020

Name:Hair Follicle Outer Root Sheath Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12347
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuehair follicle
dev stageNA
sexNA
ageNA
cell typehair follicle, outer root sheath cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC2425
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005367
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12347 CAGE DRX008300 DRR009172
Accession ID Hg19

Library idBAMCTSS
CNhs12347 DRZ000597 DRZ001982
Accession ID Hg38

Library idBAMCTSS
CNhs12347 DRZ011947 DRZ013332
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.038
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.385
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.574
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0406
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.282
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.016
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.727
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0721
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.158
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.65
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0483
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.117
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.492
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.186
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.236
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.236
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.5
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.5
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.985
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12347

Jaspar motifP-value
MA0002.20.484
MA0003.10.208
MA0004.10.695
MA0006.10.507
MA0007.10.111
MA0009.10.22
MA0014.10.808
MA0017.10.135
MA0018.21.49119e-5
MA0019.10.918
MA0024.18.5524e-7
MA0025.12.36407e-4
MA0027.10.626
MA0028.10.2
MA0029.10.208
MA0030.10.324
MA0031.10.643
MA0035.20.187
MA0038.10.0355
MA0039.20.658
MA0040.10.369
MA0041.10.498
MA0042.10.468
MA0043.11.87645e-4
MA0046.10.716
MA0047.20.946
MA0048.10.447
MA0050.10.12
MA0051.10.652
MA0052.10.491
MA0055.10.438
MA0057.10.255
MA0058.10.881
MA0059.10.346
MA0060.12.86184e-8
MA0061.10.612
MA0062.26.07743e-4
MA0065.20.0224
MA0066.10.0415
MA0067.10.0486
MA0068.10.172
MA0069.10.114
MA0070.10.107
MA0071.10.349
MA0072.10.95
MA0073.10.874
MA0074.10.131
MA0076.10.0853
MA0077.10.191
MA0078.10.759
MA0079.20.703
MA0080.21.02574e-5
MA0081.10.125
MA0083.10.224
MA0084.10.365
MA0087.10.425
MA0088.10.176
MA0090.10.00145
MA0091.10.0239
MA0092.10.0801
MA0093.10.603
MA0099.20.218
MA0100.10.371
MA0101.10.188
MA0102.20.35
MA0103.10.0676
MA0104.20.935
MA0105.10.0363
MA0106.10.00824
MA0107.10.133
MA0108.20.778
MA0111.10.986
MA0112.21.20142e-4
MA0113.10.00499
MA0114.10.0647
MA0115.10.0954
MA0116.10.0255
MA0117.10.963
MA0119.10.0246
MA0122.10.989
MA0124.10.343
MA0125.10.115
MA0131.10.155
MA0135.10.923
MA0136.11.17665e-6
MA0137.20.569
MA0138.20.268
MA0139.10.382
MA0140.10.502
MA0141.10.101
MA0142.10.931
MA0143.10.125
MA0144.10.0899
MA0145.10.224
MA0146.10.114
MA0147.10.91
MA0148.10.41
MA0149.10.77
MA0150.10.408
MA0152.10.301
MA0153.10.414
MA0154.10.0865
MA0155.10.299
MA0156.12.30297e-5
MA0157.10.197
MA0159.10.0727
MA0160.10.957
MA0162.10.0946
MA0163.19.92678e-5
MA0164.10.835
MA0258.10.0381
MA0259.10.72



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12347

Novel motifP-value
10.122
100.328
1000.558
1010.628
1020.422
1030.0811
1040.455
1050.511
1060.0697
1070.196
1080.225
1090.0287
110.0932
1100.122
1110.493
1120.232
1130.135
1140.0139
1150.737
1160.107
1170.398
1180.45
1190.629
120.52
1200.117
1210.706
1220.228
1230.079
1240.469
1250.166
1260.349
1270.326
1280.0283
1290.89
130.777
1300.897
1310.983
1320.285
1330.441
1340.0876
1350.431
1360.724
1370.15
1380.937
1390.0189
140.951
1400.725
1410.757
1420.144
1430.252
1440.378
1450.178
1460.386
1470.0954
1480.0934
1496.81098e-4
150.628
1500.521
1510.328
1520.198
1530.227
1540.537
1550.303
1560.736
1570.904
1580.0511
1590.206
160.0259
1600.0522
1610.416
1620.224
1630.833
1640.0889
1650.965
1660.724
1670.89
1680.492
1690.0287
170.291
180.137
190.0264
20.398
200.642
210.0205
220.0574
230.234
240.857
250.91
260.0331
270.205
280.172
290.122
30.0669
300.518
310.459
321.39104e-7
330.343
340.965
350.346
360.922
370.014
380.674
390.444
40.218
400.711
410.738
420.575
430.123
440.252
450.786
460.0505
470.206
480.4
490.173
50.489
500.628
510.412
520.42
530.784
540.353
550.00697
560.347
570.406
580.966
590.0512
60.434
600.361
610.826
620.491
630.187
640.473
650.0725
660.278
670.744
680.495
690.0908
70.987
700.042
710.0815
720.543
730.0558
740.279
750.388
760.806
770.028
780.991
790.0147
80.0266
800.353
810.409
820.0649
830.736
840.35
850.0483
860.792
870.0989
880.154
890.0184
90.178
900.961
910.46
920.0185
930.913
940.136
950.131
960.74
970.686
980.597
990.0245



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12347


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002559 (hair follicle cell)
0002561 (outer root sheath cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0005933 (hair root sheath)
0005942 (hair outer root sheath)
0002416 (integumental system)
0005932 (bulb of hair follicle)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000075 (human outer root sheath cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)

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