FF:11901-125F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005709 | |||
|accession_numbers=CAGE;DRX008568;DRR009440;DRZ000865;DRZ002250;DRZ012215;DRZ013600 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.97!939.81!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.17!147.90!SPI1;;chr19:50922187..50922204,+!p1@SPIB!2.15!140.69!SPIB;;chr20:20348740..20348757,+!p1@INSM1!2.10!125.49!INSM1;;chr6:106534192..106534224,+!p1@PRDM1!1.99!260.33!PRDM1;;chr4:185395590..185395627,-!p3@IRF2!1.95!108.34!IRF2;;chr2:68592406..68592424,+!p1@PLEK!1.78!58.85!PLEK;;chr6:106534230..106534254,+!p2@PRDM1!1.74!130.95!PRDM1;;chr9:102584262..102584276,+!p1@NR4A3!1.71!109.51!NR4A3;;chr2:61108695..61108753,+!p1@REL!1.57!235.39!REL;;chr7:150102756..150102772,+!p5@ZNF775!1.56!35.46!ZNF775;;chr1:25291475..25291511,-!p2@RUNX3!1.56!35.46!RUNX3;;chr1:157108130..157108173,-!p1@ETV3!1.55!239.48!ETV3;;chr1:25256756..25256774,-!p1@RUNX3!1.53!61.19!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!1.49!41.12!STAT4;;chr10:35484053..35484076,+!p1@CREM!1.40!59.24!CREM;;chr9:102584128..102584144,+!p3@NR4A3!1.40!45.40!NR4A3;;chr10:104155480..104155534,+!p2@NFKB2!1.39!146.92!NFKB2;;chr4:185395633..185395651,-!p2@IRF2!1.39!37.61!IRF2;;chr2:61108808..61108821,+!p3@REL!1.38!28.64!REL;;chr1:151319654..151319698,-!p2@RFX5!1.37!48.33!RFX5;;chr11:47400062..47400077,-!p2@SPI1!1.37!22.60!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.94!ETV6;;chr7:50344251..50344288,+!p3@IKZF1!1.34!21.04!IKZF1;;chr16:31885093..31885165,+!p1@ZNF267!1.33!302.81!ZNF267;;chr9:102584159..102584174,+!p2@NR4A3!1.32!35.27!NR4A3;;chr1:8935472..8935488,-!p20@ENO1!1.31!19.49!ENO1;;chr19:45579725..45579743,-!p1@ZNF296!1.30!83.21!ZNF296;;chr6:12012170..12012245,+!p1@HIVEP1!1.29!91.58!HIVEP1;;chr2:61108771..61108789,+!p4@REL!1.29!27.67!REL;;chr19:3574157..3574180,+!p4@HMG20B!1.28!18.12!HMG20B;;chr9:102584241..102584261,+!p4@NR4A3!1.27!27.09!NR4A3;;chr4:57547454..57547469,-!p1@HOPX!1.26!17.15!HOPX;;chr2:214015111..214015179,-!p1@IKZF2!1.25!29.81!IKZF2;;chr13:41593425..41593480,-!p1@ELF1!1.23!98.99!ELF1;;chr1:212782094..212782109,+!p1@ATF3!1.20!394.98!ATF3;;chr9:117150254..117150271,-!p1@AKNA!1.17!38.00!AKNA;;chr7:50344289..50344323,+!p1@IKZF1!1.17!13.84!IKZF1;;chr2:8822176..8822196,+!p1@ID2!1.15!1805.77!ID2;;chr2:231090433..231090469,+!p1@SP140!1.14!12.67!SP140;;chr2:61108650..61108687,+!p2@REL!1.12!59.24!REL;;chr2:68592394..68592405,+!p2@PLEK!1.12!12.08!PLEK;;chr2:214015343..214015366,-!p3@IKZF2!1.11!11.89!IKZF2;;chr5:71803177..71803255,-!p1@ZNF366!1.11!11.89!ZNF366;;chr1:157108746..157108762,-!p4@ETV3!1.10!11.50!ETV3;;chr19:3574330..3574393,+!p2@HMG20B!1.10!11.50!HMG20B;;chr2:169312725..169312810,+!p1@CERS6!1.09!276.31!CERS6;;chr19:45252008..45252024,+!p2@BCL3!1.09!37.41!BCL3;;chr9:102584278..102584285,+!p5@NR4A3!1.09!11.30!NR4A3;;chr1:10754477..10754517,-!p1@CASZ1!1.08!18.32!CASZ1;;chr15:50647274..50647336,-!p1@GABPB1!1.07!75.22!GABPB1;;chr5:321810..321877,+!p1@AHRR!1.07!34.69!AHRR;;chr2:74229812..74229867,+!p1@TET3!1.07!27.28!TET3;;chr3:71114563..71114584,-!p49@FOXP1!1.07!10.72!FOXP1;;chr7:50343634..50343717,+!p2@IKZF1!1.07!10.72!IKZF1;;chr15:90544532..90544563,+!p1@ZNF710!1.05!20.85!ZNF710;;chr1:221052776..221052799,+!p1@HLX!1.05!18.71!HLX;;chr6:12012249..12012266,+!p5@HIVEP1!1.05!17.93!HIVEP1;;chr19:12476443..12476467,-!p1@ZNF442!1.05!16.95!ZNF442;;chr19:50432132..50432217,+!p2@ATF5!1.05!12.28!ATF5;;chr7:106810484..106810494,+!p4@HBP1!1.05!10.33!HBP1;;chr2:178128250..178128293,-!p6@NFE2L2!1.04!25.33!NFE2L2;;chr10:104155659..104155676,+!p4@NFKB2!1.04!12.47!NFKB2;;chr11:47237922..47237964,+!p4@DDB2!1.01!10.72!DDB2;;chr2:231090471..231090504,+!p2@SP140!1.01!9.16!SP140;;chr19:36391434..36391450,-!p1@NFKBID!0.99!17.34!NFKBID;;chr3:5021113..5021180,+!p1@BHLHE40!0.98!605.63!BHLHE40;;chr4:103422499..103422632,+!p1@NFKB1!0.98!184.14!NFKB1;;chrX:56258844..56258882,+!p1@KLF8!0.98!11.89!KLF8;;chr2:192015750..192015793,-!p2@STAT4!0.98!11.50!STAT4;;chr22:41697484..41697496,+!p3@ZC3H7B!0.98!11.11!ZC3H7B;;chr19:50432453..50432468,+!p1@ATF5!0.97!480.53!ATF5;;chr1:221052840..221052875,+!p4@HLX!0.97!9.94!HLX;;chr22:41697497..41697515,+!p2@ZC3H7B!0.95!22.41!ZC3H7B;;chr10:51572339..51572376,+!p4@NCOA4!0.95!18.32!NCOA4;;chr20:62462566..62462631,-!p1@ZBTB46!0.94!15.00!ZBTB46;;chr12:27485785..27485816,+!p1@ARNTL2!0.93!53.98!ARNTL2;;chr20:50159198..50159299,-!p1@NFATC2!0.93!11.30!NFATC2;;chr2:214014959..214015006,-!p4@IKZF2!0.93!7.60!IKZF2;;chr9:117160738..117160782,-!p2@AKNA!0.92!31.18!AKNA;;chr1:221052733..221052749,+!p2@HLX!0.92!9.55!HLX;;chr3:71179699..71179744,-!p2@FOXP1!0.91!55.54!FOXP1;;chr10:51572408..51572454,+!p3@NCOA4!0.91!43.84!NCOA4;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.21!IRF8;;chr20:46130619..46130664,+!p1@NCOA3!0.90!196.22!NCOA3;;chr10:104154246..104154347,+!p3@NFKB2!0.90!45.01!NFKB2;;chr1:157108180..157108193,-!p2@ETV3!0.90!38.97!ETV3;;chr3:5021191..5021202,+!p3@BHLHE40!0.90!19.29!BHLHE40;;chr22:38380543..38380569,-!p1@SOX10!0.90!7.01!SOX10;;chr14:69259772..69259790,-!p1@ZFP36L1!0.89!722.15!ZFP36L1;;chr10:111967345..111967422,+!p1@MXI1!0.89!117.11!MXI1;;chr19:37019136..37019178,-!p1@ZNF260!0.89!57.68!ZNF260;;chr4:185395191..185395226,-!p4@IRF2!0.89!9.55!IRF2;;chr1:151319283..151319314,-!p4@RFX5!0.87!7.21!RFX5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.87!6.43!SEBOX;;chr19:12476469..12476509,-!p2@ZNF442!0.86!10.91!ZNF442;;chr11:47399996..47400014,-!p4@SPI1!0.86!6.24!SPI1;;chr2:239148671..239148686,-!p1@HES6!0.85!23.58!HES6;;chr14:89883509..89883587,-!p2@FOXN3!0.84!42.87!FOXN3;;chr12:54785074..54785122,-!p2@ZNF385A!0.84!9.35!ZNF385A;;chrX:56258900..56258917,+!p4@KLF8!0.84!5.85!KLF8;;chr2:178128199..178128245,-!p3@NFE2L2!0.83!33.32!NFE2L2;;chr19:3573282..3573289,+!p5@HMG20B!0.83!7.40!HMG20B;;chr17:40540484..40540537,-!p2@STAT3!0.82!57.29!STAT3;;chr2:70142232..70142251,+!p1@MXD1!0.82!34.30!MXD1;;chr14:75988771..75988826,+!p1@BATF!0.82!7.60!BATF;;chr5:172483347..172483407,+!p1@C5orf41!0.80!43.45!CREBRF;;chr19:45504688..45504782,+!p1@RELB!0.80!34.49!RELB;;chr1:14026671..14026705,+!p2@PRDM2!0.79!33.71!PRDM2;;chr10:3827417..3827428,-!p3@KLF6!0.78!46.96!KLF6;;chr20:46130602..46130613,+!p3@NCOA3!0.78!15.59!NCOA3;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.78!15.20!ZNF525;;chr2:48541789..48541874,+!p1@FOXN2!0.77!120.03!FOXN2;;chr11:13299319..13299424,+!p1@ARNTL!0.77!53.78!ARNTL;;chr10:3827371..3827386,-!p2@KLF6!0.77!45.01!KLF6;;chrX:56258811..56258838,+!p2@KLF8!0.77!6.82!KLF8;;chr1:157108764..157108776,-!p7@ETV3!0.77!4.87!ETV3;;chr10:3827389..3827408,-!p1@KLF6!0.76!399.07!KLF6;;chr12:27485823..27485868,+!p2@ARNTL2!0.75!20.66!ARNTL2;;chr4:103422471..103422495,+!p2@NFKB1!0.75!14.03!NFKB1;;chr12:12764995..12765017,+!p3@CREBL2!0.75!6.82!CREBL2;;chr4:103478257..103478273,+!p28@NFKB1!0.75!4.68!NFKB1;;chr19:22034784..22034801,-!p4@ZNF43!0.75!4.68!ZNF43;;chr1:167190091..167190156,+!p1@POU2F1!0.74!39.75!POU2F1;;chr6:7108855..7108903,+!p5@RREB1!0.74!10.91!RREB1;;chr2:208031943..208031978,-!p5@KLF7!0.74!6.24!KLF7;;chr22:21771656..21771662,+!p1@HIC2!0.74!4.48!HIC2;;chr1:151318829..151318851,-!p13@RFX5!0.74!4.48!RFX5;;chr10:3824646..3824677,-!p9@KLF6!0.74!4.48!KLF6;;chr11:47399947..47399961,-!p3@SPI1!0.74!4.48!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!0.73!48.72!NFKBIE;;chr19:53039233..53039247,+!p2@ZNF808!0.73!6.82!ZNF808;;chr3:101546827..101546847,+!p2@NFKBIZ!0.73!6.43!NFKBIZ;;chr3:71179746..71179783,-!p7@FOXP1!0.72!15.78!FOXP1;;chr17:36861675..36861697,+!p3@MLLT6!0.72!10.72!MLLT6;;chr22:42666593..42666623,-!p@chr22:42666593..42666623,-!0.72!10.52!TCF20;;chr19:45261992..45262010,+!p9@BCL3!0.72!6.24!BCL3;;chr15:85144307..85144329,+!p2@ZSCAN2!0.72!4.87!ZSCAN2;;chr22:38609611..38609624,+!p5@MAFF!0.72!4.29!MAFF;;chr4:57547265..57547278,-!p9@HOPX!0.72!4.29!HOPX;;chr3:71114066..71114114,-!p1@FOXP1!0.71!95.87!FOXP1;;chr14:74226961..74227020,-!p1@C14orf43!0.71!30.59!C14orf43;;chr12:51566562..51566584,-!p2@TFCP2!0.71!12.67!TFCP2;;chr12:27485762..27485776,+!p3@ARNTL2!0.71!12.08!ARNTL2;;chr1:27023752..27023799,+!p4@ARID1A!0.71!5.65!ARID1A;;chrX:66763815..66763854,+!p2@AR!0.71!5.65!AR;;chr1:6684918..6684936,+!p2@THAP3!0.71!5.26!THAP3;;chr1:221052994..221053008,+!p6@HLX!0.71!5.07!HLX;;chr1:8935456..8935467,-!p27@ENO1!0.71!4.09!ENO1;;chr2:214016254..214016282,-!p7@IKZF2!0.71!4.09!IKZF2;;chr9:94186101..94186122,-!p1@NFIL3!0.70!63.52!NFIL3;;chr14:89883412..89883478,-!p3@FOXN3!0.70!14.42!FOXN3;;chr1:40915725..40915808,+!p1@ZNF643!0.69!12.67!ZNF643;;chr11:65430554..65430579,-!p3@RELA!0.69!10.91!RELA;;chr14:89878529..89878559,-!p5@FOXN3!0.69!5.65!FOXN3;;chr6:144385698..144385742,-!p2@PLAGL1!0.69!4.87!PLAGL1;;chr6:29648890..29648944,-!p1@ZFP57!0.69!3.90!ZFP57;;chr1:157108728..157108744,-!p5@ETV3!0.69!3.90!ETV3;;chr2:231090344..231090361,-!p3@SP110!0.69!3.90!SP110;;chr9:129567282..129567353,+!p1@ZBTB43!0.68!57.09!ZBTB43;;chr2:70142189..70142223,+!p2@MXD1!0.68!30.79!MXD1;;chr19:52408257..52408278,-!p1@ZNF649!0.68!28.45!ZNF649;;chr19:20011744..20011770,+!p1@ZNF93!0.68!16.56!ZNF93;;chr12:6798692..6798723,-!p5@ZNF384!0.68!6.63!ZNF384;;chr10:8096631..8096660,+!p1@GATA3!0.68!4.68!GATA3;;chr19:12273866..12273935,+!p1@ZNF136!0.67!38.00!ZNF136;;chr7:128577972..128578047,+!p1@IRF5!0.67!6.24!IRF5;;chr3:178789993..178790049,-!p5@ZMAT3!0.67!5.65!ZMAT3;;chr2:238600998..238601013,+!p5@LRRFIP1!0.67!3.70!LRRFIP1;;chr5:124084466..124084484,-!p6@ZNF608!0.67!3.70!ZNF608;;chr9:94186131..94186174,-!p2@NFIL3!0.66!33.91!NFIL3;;chr3:63898321..63898396,+!p3@ATXN7!0.66!8.96!ATXN7;;chr19:12444440..12444455,-!p1@ZNF563!0.66!6.63!ZNF563;;chr19:45254529..45254561,+!p10@BCL3!0.66!5.07!BCL3;;chr1:151319318..151319338,-!p3@RFX5!0.66!4.48!RFX5;;chr15:85144229..85144273,+!p1@ZSCAN2!0.65!21.43!ZSCAN2;;chr12:53774567..53774658,+!p2@SP1!0.65!19.49!SP1;;chr20:46130672..46130686,+!p2@NCOA3!0.65!17.73!NCOA3;;chr1:161736038..161736056,+!p4@ATF6!0.65!8.96!ATF6;;chr18:56532100..56532130,+!p1@ZNF532!0.65!7.01!ZNF532;;chr19:37341673..37341699,-!p3@ZNF790!0.65!6.63!ZNF790;;chr19:12163769..12163798,-!p1@ZNF878!0.65!4.68!ZNF878;;chr2:61108689..61108694,+!p6@REL!0.65!4.48!REL;;chrX:70585978..70586012,+!p3@TAF1!0.65!4.48!TAF1;;chrX:56258885..56258896,+!p5@KLF8!0.65!3.51!KLF8;;chr6:106535598..106535637,+!p7@PRDM1!0.65!3.51!PRDM1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| |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.97!939.81!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.17!147.90!SPI1;;chr19:50922187..50922204,+!p1@SPIB!2.15!140.69!SPIB;;chr20:20348740..20348757,+!p1@INSM1!2.10!125.49!INSM1;;chr6:106534192..106534224,+!p1@PRDM1!1.99!260.33!PRDM1;;chr4:185395590..185395627,-!p3@IRF2!1.95!108.34!IRF2;;chr2:68592406..68592424,+!p1@PLEK!1.78!58.85!PLEK;;chr6:106534230..106534254,+!p2@PRDM1!1.74!130.95!PRDM1;;chr9:102584262..102584276,+!p1@NR4A3!1.71!109.51!NR4A3;;chr2:61108695..61108753,+!p1@REL!1.57!235.39!REL;;chr7:150102756..150102772,+!p5@ZNF775!1.56!35.46!ZNF775;;chr1:25291475..25291511,-!p2@RUNX3!1.56!35.46!RUNX3;;chr1:157108130..157108173,-!p1@ETV3!1.55!239.48!ETV3;;chr1:25256756..25256774,-!p1@RUNX3!1.53!61.19!RUNX3;;chr2:192015701..192015743,-!p1@STAT4!1.49!41.12!STAT4;;chr10:35484053..35484076,+!p1@CREM!1.40!59.24!CREM;;chr9:102584128..102584144,+!p3@NR4A3!1.40!45.40!NR4A3;;chr10:104155480..104155534,+!p2@NFKB2!1.39!146.92!NFKB2;;chr4:185395633..185395651,-!p2@IRF2!1.39!37.61!IRF2;;chr2:61108808..61108821,+!p3@REL!1.38!28.64!REL;;chr1:151319654..151319698,-!p2@RFX5!1.37!48.33!RFX5;;chr11:47400062..47400077,-!p2@SPI1!1.37!22.60!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.94!ETV6;;chr7:50344251..50344288,+!p3@IKZF1!1.34!21.04!IKZF1;;chr16:31885093..31885165,+!p1@ZNF267!1.33!302.81!ZNF267;;chr9:102584159..102584174,+!p2@NR4A3!1.32!35.27!NR4A3;;chr1:8935472..8935488,-!p20@ENO1!1.31!19.49!ENO1;;chr19:45579725..45579743,-!p1@ZNF296!1.30!83.21!ZNF296;;chr6:12012170..12012245,+!p1@HIVEP1!1.29!91.58!HIVEP1;;chr2:61108771..61108789,+!p4@REL!1.29!27.67!REL;;chr19:3574157..3574180,+!p4@HMG20B!1.28!18.12!HMG20B;;chr9:102584241..102584261,+!p4@NR4A3!1.27!27.09!NR4A3;;chr4:57547454..57547469,-!p1@HOPX!1.26!17.15!HOPX;;chr2:214015111..214015179,-!p1@IKZF2!1.25!29.81!IKZF2;;chr13:41593425..41593480,-!p1@ELF1!1.23!98.99!ELF1;;chr1:212782094..212782109,+!p1@ATF3!1.20!394.98!ATF3;;chr9:117150254..117150271,-!p1@AKNA!1.17!38.00!AKNA;;chr7:50344289..50344323,+!p1@IKZF1!1.17!13.84!IKZF1;;chr2:8822176..8822196,+!p1@ID2!1.15!1805.77!ID2;;chr2:231090433..231090469,+!p1@SP140!1.14!12.67!SP140;;chr2:61108650..61108687,+!p2@REL!1.12!59.24!REL;;chr2:68592394..68592405,+!p2@PLEK!1.12!12.08!PLEK;;chr2:214015343..214015366,-!p3@IKZF2!1.11!11.89!IKZF2;;chr5:71803177..71803255,-!p1@ZNF366!1.11!11.89!ZNF366;;chr1:157108746..157108762,-!p4@ETV3!1.10!11.50!ETV3;;chr19:3574330..3574393,+!p2@HMG20B!1.10!11.50!HMG20B;;chr2:169312725..169312810,+!p1@CERS6!1.09!276.31!CERS6;;chr19:45252008..45252024,+!p2@BCL3!1.09!37.41!BCL3;;chr9:102584278..102584285,+!p5@NR4A3!1.09!11.30!NR4A3;;chr1:10754477..10754517,-!p1@CASZ1!1.08!18.32!CASZ1;;chr15:50647274..50647336,-!p1@GABPB1!1.07!75.22!GABPB1;;chr5:321810..321877,+!p1@AHRR!1.07!34.69!AHRR;;chr2:74229812..74229867,+!p1@TET3!1.07!27.28!TET3;;chr3:71114563..71114584,-!p49@FOXP1!1.07!10.72!FOXP1;;chr7:50343634..50343717,+!p2@IKZF1!1.07!10.72!IKZF1;;chr15:90544532..90544563,+!p1@ZNF710!1.05!20.85!ZNF710;;chr1:221052776..221052799,+!p1@HLX!1.05!18.71!HLX;;chr6:12012249..12012266,+!p5@HIVEP1!1.05!17.93!HIVEP1;;chr19:12476443..12476467,-!p1@ZNF442!1.05!16.95!ZNF442;;chr19:50432132..50432217,+!p2@ATF5!1.05!12.28!ATF5;;chr7:106810484..106810494,+!p4@HBP1!1.05!10.33!HBP1;;chr2:178128250..178128293,-!p6@NFE2L2!1.04!25.33!NFE2L2;;chr10:104155659..104155676,+!p4@NFKB2!1.04!12.47!NFKB2;;chr11:47237922..47237964,+!p4@DDB2!1.01!10.72!DDB2;;chr2:231090471..231090504,+!p2@SP140!1.01!9.16!SP140;;chr19:36391434..36391450,-!p1@NFKBID!0.99!17.34!NFKBID;;chr3:5021113..5021180,+!p1@BHLHE40!0.98!605.63!BHLHE40;;chr4:103422499..103422632,+!p1@NFKB1!0.98!184.14!NFKB1;;chrX:56258844..56258882,+!p1@KLF8!0.98!11.89!KLF8;;chr2:192015750..192015793,-!p2@STAT4!0.98!11.50!STAT4;;chr22:41697484..41697496,+!p3@ZC3H7B!0.98!11.11!ZC3H7B;;chr19:50432453..50432468,+!p1@ATF5!0.97!480.53!ATF5;;chr1:221052840..221052875,+!p4@HLX!0.97!9.94!HLX;;chr22:41697497..41697515,+!p2@ZC3H7B!0.95!22.41!ZC3H7B;;chr10:51572339..51572376,+!p4@NCOA4!0.95!18.32!NCOA4;;chr20:62462566..62462631,-!p1@ZBTB46!0.94!15.00!ZBTB46;;chr12:27485785..27485816,+!p1@ARNTL2!0.93!53.98!ARNTL2;;chr20:50159198..50159299,-!p1@NFATC2!0.93!11.30!NFATC2;;chr2:214014959..214015006,-!p4@IKZF2!0.93!7.60!IKZF2;;chr9:117160738..117160782,-!p2@AKNA!0.92!31.18!AKNA;;chr1:221052733..221052749,+!p2@HLX!0.92!9.55!HLX;;chr3:71179699..71179744,-!p2@FOXP1!0.91!55.54!FOXP1;;chr10:51572408..51572454,+!p3@NCOA4!0.91!43.84!NCOA4;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.21!IRF8;;chr20:46130619..46130664,+!p1@NCOA3!0.90!196.22!NCOA3;;chr10:104154246..104154347,+!p3@NFKB2!0.90!45.01!NFKB2;;chr1:157108180..157108193,-!p2@ETV3!0.90!38.97!ETV3;;chr3:5021191..5021202,+!p3@BHLHE40!0.90!19.29!BHLHE40;;chr22:38380543..38380569,-!p1@SOX10!0.90!7.01!SOX10;;chr14:69259772..69259790,-!p1@ZFP36L1!0.89!722.15!ZFP36L1;;chr10:111967345..111967422,+!p1@MXI1!0.89!117.11!MXI1;;chr19:37019136..37019178,-!p1@ZNF260!0.89!57.68!ZNF260;;chr4:185395191..185395226,-!p4@IRF2!0.89!9.55!IRF2;;chr1:151319283..151319314,-!p4@RFX5!0.87!7.21!RFX5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.87!6.43!SEBOX;;chr19:12476469..12476509,-!p2@ZNF442!0.86!10.91!ZNF442;;chr11:47399996..47400014,-!p4@SPI1!0.86!6.24!SPI1;;chr2:239148671..239148686,-!p1@HES6!0.85!23.58!HES6;;chr14:89883509..89883587,-!p2@FOXN3!0.84!42.87!FOXN3;;chr12:54785074..54785122,-!p2@ZNF385A!0.84!9.35!ZNF385A;;chrX:56258900..56258917,+!p4@KLF8!0.84!5.85!KLF8;;chr2:178128199..178128245,-!p3@NFE2L2!0.83!33.32!NFE2L2;;chr19:3573282..3573289,+!p5@HMG20B!0.83!7.40!HMG20B;;chr17:40540484..40540537,-!p2@STAT3!0.82!57.29!STAT3;;chr2:70142232..70142251,+!p1@MXD1!0.82!34.30!MXD1;;chr14:75988771..75988826,+!p1@BATF!0.82!7.60!BATF;;chr5:172483347..172483407,+!p1@C5orf41!0.80!43.45!CREBRF;;chr19:45504688..45504782,+!p1@RELB!0.80!34.49!RELB;;chr1:14026671..14026705,+!p2@PRDM2!0.79!33.71!PRDM2;;chr10:3827417..3827428,-!p3@KLF6!0.78!46.96!KLF6;;chr20:46130602..46130613,+!p3@NCOA3!0.78!15.59!NCOA3;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.78!15.20!ZNF525;;chr2:48541789..48541874,+!p1@FOXN2!0.77!120.03!FOXN2;;chr11:13299319..13299424,+!p1@ARNTL!0.77!53.78!ARNTL;;chr10:3827371..3827386,-!p2@KLF6!0.77!45.01!KLF6;;chrX:56258811..56258838,+!p2@KLF8!0.77!6.82!KLF8;;chr1:157108764..157108776,-!p7@ETV3!0.77!4.87!ETV3;;chr10:3827389..3827408,-!p1@KLF6!0.76!399.07!KLF6;;chr12:27485823..27485868,+!p2@ARNTL2!0.75!20.66!ARNTL2;;chr4:103422471..103422495,+!p2@NFKB1!0.75!14.03!NFKB1;;chr12:12764995..12765017,+!p3@CREBL2!0.75!6.82!CREBL2;;chr4:103478257..103478273,+!p28@NFKB1!0.75!4.68!NFKB1;;chr19:22034784..22034801,-!p4@ZNF43!0.75!4.68!ZNF43;;chr1:167190091..167190156,+!p1@POU2F1!0.74!39.75!POU2F1;;chr6:7108855..7108903,+!p5@RREB1!0.74!10.91!RREB1;;chr2:208031943..208031978,-!p5@KLF7!0.74!6.24!KLF7;;chr22:21771656..21771662,+!p1@HIC2!0.74!4.48!HIC2;;chr1:151318829..151318851,-!p13@RFX5!0.74!4.48!RFX5;;chr10:3824646..3824677,-!p9@KLF6!0.74!4.48!KLF6;;chr11:47399947..47399961,-!p3@SPI1!0.74!4.48!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!0.73!48.72!NFKBIE;;chr19:53039233..53039247,+!p2@ZNF808!0.73!6.82!ZNF808;;chr3:101546827..101546847,+!p2@NFKBIZ!0.73!6.43!NFKBIZ;;chr3:71179746..71179783,-!p7@FOXP1!0.72!15.78!FOXP1;;chr17:36861675..36861697,+!p3@MLLT6!0.72!10.72!MLLT6;;chr22:42666593..42666623,-!p@chr22:42666593..42666623,-!0.72!10.52!TCF20;;chr19:45261992..45262010,+!p9@BCL3!0.72!6.24!BCL3;;chr15:85144307..85144329,+!p2@ZSCAN2!0.72!4.87!ZSCAN2;;chr22:38609611..38609624,+!p5@MAFF!0.72!4.29!MAFF;;chr4:57547265..57547278,-!p9@HOPX!0.72!4.29!HOPX;;chr3:71114066..71114114,-!p1@FOXP1!0.71!95.87!FOXP1;;chr14:74226961..74227020,-!p1@C14orf43!0.71!30.59!C14orf43;;chr12:51566562..51566584,-!p2@TFCP2!0.71!12.67!TFCP2;;chr12:27485762..27485776,+!p3@ARNTL2!0.71!12.08!ARNTL2;;chr1:27023752..27023799,+!p4@ARID1A!0.71!5.65!ARID1A;;chrX:66763815..66763854,+!p2@AR!0.71!5.65!AR;;chr1:6684918..6684936,+!p2@THAP3!0.71!5.26!THAP3;;chr1:221052994..221053008,+!p6@HLX!0.71!5.07!HLX;;chr1:8935456..8935467,-!p27@ENO1!0.71!4.09!ENO1;;chr2:214016254..214016282,-!p7@IKZF2!0.71!4.09!IKZF2;;chr9:94186101..94186122,-!p1@NFIL3!0.70!63.52!NFIL3;;chr14:89883412..89883478,-!p3@FOXN3!0.70!14.42!FOXN3;;chr1:40915725..40915808,+!p1@ZNF643!0.69!12.67!ZNF643;;chr11:65430554..65430579,-!p3@RELA!0.69!10.91!RELA;;chr14:89878529..89878559,-!p5@FOXN3!0.69!5.65!FOXN3;;chr6:144385698..144385742,-!p2@PLAGL1!0.69!4.87!PLAGL1;;chr6:29648890..29648944,-!p1@ZFP57!0.69!3.90!ZFP57;;chr1:157108728..157108744,-!p5@ETV3!0.69!3.90!ETV3;;chr2:231090344..231090361,-!p3@SP110!0.69!3.90!SP110;;chr9:129567282..129567353,+!p1@ZBTB43!0.68!57.09!ZBTB43;;chr2:70142189..70142223,+!p2@MXD1!0.68!30.79!MXD1;;chr19:52408257..52408278,-!p1@ZNF649!0.68!28.45!ZNF649;;chr19:20011744..20011770,+!p1@ZNF93!0.68!16.56!ZNF93;;chr12:6798692..6798723,-!p5@ZNF384!0.68!6.63!ZNF384;;chr10:8096631..8096660,+!p1@GATA3!0.68!4.68!GATA3;;chr19:12273866..12273935,+!p1@ZNF136!0.67!38.00!ZNF136;;chr7:128577972..128578047,+!p1@IRF5!0.67!6.24!IRF5;;chr3:178789993..178790049,-!p5@ZMAT3!0.67!5.65!ZMAT3;;chr2:238600998..238601013,+!p5@LRRFIP1!0.67!3.70!LRRFIP1;;chr5:124084466..124084484,-!p6@ZNF608!0.67!3.70!ZNF608;;chr9:94186131..94186174,-!p2@NFIL3!0.66!33.91!NFIL3;;chr3:63898321..63898396,+!p3@ATXN7!0.66!8.96!ATXN7;;chr19:12444440..12444455,-!p1@ZNF563!0.66!6.63!ZNF563;;chr19:45254529..45254561,+!p10@BCL3!0.66!5.07!BCL3;;chr1:151319318..151319338,-!p3@RFX5!0.66!4.48!RFX5;;chr15:85144229..85144273,+!p1@ZSCAN2!0.65!21.43!ZSCAN2;;chr12:53774567..53774658,+!p2@SP1!0.65!19.49!SP1;;chr20:46130672..46130686,+!p2@NCOA3!0.65!17.73!NCOA3;;chr1:161736038..161736056,+!p4@ATF6!0.65!8.96!ATF6;;chr18:56532100..56532130,+!p1@ZNF532!0.65!7.01!ZNF532;;chr19:37341673..37341699,-!p3@ZNF790!0.65!6.63!ZNF790;;chr19:12163769..12163798,-!p1@ZNF878!0.65!4.68!ZNF878;;chr2:61108689..61108694,+!p6@REL!0.65!4.48!REL;;chrX:70585978..70586012,+!p3@TAF1!0.65!4.48!TAF1;;chrX:56258885..56258896,+!p5@KLF8!0.65!3.51!KLF8;;chr6:106535598..106535637,+!p7@PRDM1!0.65!3.51!PRDM1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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000453;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor1.CNhs13535.11901-125F2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11901-125F2 | |id=FF:11901-125F2 | ||
|is_a=EFO:0002091;;FF:0011136 | |is_a=EFO:0002091;;FF:0011136 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13535 | |||
|library_id_phase_based=2:CNhs13535 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11901 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11901 | |||
|name=migratory langerhans cells, donor1 | |name=migratory langerhans cells, donor1 | ||
|namespace= | |namespace= | ||
Line 45: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13535,LSID1029,release012,COMPLETED | |profile_hcage=CNhs13535,LSID1029,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 79: | ||
|rna_weight_ug=1.2131 | |rna_weight_ug=1.2131 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 101: | ||
|top_motifs=HSF1,2:2.66378505338;TLX2:2.04068133901;FOX{F1,F2,J1}:1.74879332592;NFKB1_REL_RELA:1.3468215698;PAX6:1.27870594624;HMX1:1.10169881176;STAT1,3:1.07380031586;FOXP3:1.03241005614;SREBF1,2:0.910338276538;FOXA2:0.853780168522;SPZ1:0.834033668722;FOXN1:0.797433172016;PDX1:0.740234603284;RXRA_VDR{dimer}:0.739962139759;ATF5_CREB3:0.731665822515;CDX1,2,4:0.7182668472;ARID5B:0.71164881984;RUNX1..3:0.702134795716;ATF2:0.698109748093;IRF1,2:0.687607153899;ESRRA:0.684380176748;ZBTB16:0.612993243127;NFIX:0.612957937399;OCT4_SOX2{dimer}:0.61191459706;AHR_ARNT_ARNT2:0.588188204661;HAND1,2:0.564933238998;NANOG{mouse}:0.563579512432;SPI1:0.490390101174;EVI1:0.486051528303;NKX6-1,2:0.461058796307;ELF1,2,4:0.457321165084;RFX2..5_RFXANK_RFXAP:0.417249112056;RORA:0.381245126748;SPIB:0.339557808932;YY1:0.338659738293;STAT5{A,B}:0.332896669443;HNF4A_NR2F1,2:0.327810557267;POU3F1..4:0.321547955746;FOX{D1,D2}:0.316263612588;PAX2:0.316082189992;CUX2:0.307104890901;POU1F1:0.287427548275;NFY{A,B,C}:0.283246330359;BPTF:0.263860558297;IKZF2:0.253059520549;HMGA1,2:0.241898081893;NKX3-1:0.230348073783;PRRX1,2:0.230266484553;NR5A1,2:0.223081365537;IRF7:0.212554249792;NKX2-2,8:0.207317641716;MYB:0.195836375939;ALX4:0.193429746484;FOSL2:0.18660233055;NKX3-2:0.141907478522;NFE2L1:0.13979593738;ETS1,2:0.130483198914;TGIF1:0.102183243633;HOXA9_MEIS1:0.0962809994332;GLI1..3:0.0941416721398;SRF:0.0937006224115;EP300:0.0672279472982;SOX2:0.0653223384772;FOXQ1:0.0652945335624;LMO2:0.0574500973133;JUN:0.0519368578182;FOXM1:0.050078760795;GATA6:0.0403906932719;CRX:0.0394646435114;LHX3,4:0.0377024929945;SNAI1..3:0.0267650238029;NR6A1:0.0130404768602;POU2F1..3:0.00855874266662;MYFfamily:-0.00942820251076;NKX2-3_NKX2-5:-0.0177179210136;NFE2L2:-0.0281846734225;ATF4:-0.0341985978917;HOX{A6,A7,B6,B7}:-0.0469393696911;ALX1:-0.0558419072119;CREB1:-0.0806628941624;STAT2,4,6:-0.0889824735466;NFE2:-0.0899565381375;ZEB1:-0.0906888469683;BACH2:-0.103258206508;NRF1:-0.10565576395;DMAP1_NCOR{1,2}_SMARC:-0.124620306732;FOXO1,3,4:-0.133616739319;ESR1:-0.135607599112;PBX1:-0.137397295893;TFCP2:-0.14846712702;HES1:-0.171663902732;ZFP161:-0.18739243578;ZNF148:-0.200723653628;TOPORS:-0.205953787688;SMAD1..7,9:-0.210950001181;PITX1..3:-0.220883466782;MYOD1:-0.233455212723;FOXP1:-0.23408295752;ATF6:-0.242007374289;SOX5:-0.243500899111;VSX1,2:-0.245187669971;HNF1A:-0.261770965395;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.265125253975;HIF1A:-0.290888633752;MAFB:-0.304203986415;NANOG:-0.308858653835;ELK1,4_GABP{A,B1}:-0.310777078327;TAL1_TCF{3,4,12}:-0.330568899059;FOS_FOS{B,L1}_JUN{B,D}:-0.333723809491;NFATC1..3:-0.339288010466;MAZ:-0.353517706386;SP1:-0.359808561891;TBP:-0.359879735741;AIRE:-0.369961497459;NFIL3:-0.375051437986;PAX8:-0.388433030941;E2F1..5:-0.392769068406;HOX{A4,D4}:-0.415261681361;GZF1:-0.415658157242;UFEwm:-0.418243326726;SOX17:-0.422006530828;ZNF238:-0.437896483355;PAX4:-0.442438714629;GFI1B:-0.443484277663;ZNF143:-0.45688201925;AR:-0.473947329721;MEF2{A,B,C,D}:-0.479933916879;SOX{8,9,10}:-0.512192894495;TBX4,5:-0.526692367615;GFI1:-0.543964902722;HLF:-0.585163962823;GATA4:-0.585429561934;ZIC1..3:-0.589775784782;LEF1_TCF7_TCF7L1,2:-0.592218127387;NR3C1:-0.636465296168;MYBL2:-0.638023405781;EBF1:-0.64708052913;MED-1{core}:-0.679870857101;ONECUT1,2:-0.690609056239;CEBPA,B_DDIT3:-0.703300882835;POU5F1:-0.709103498271;PPARG:-0.729306380103;RFX1:-0.73152424105;PAX3,7:-0.742947349403;BREu{core}:-0.747073243379;NR1H4:-0.771752240875;MTE{core}:-0.775339384286;TP53:-0.794700763016;XBP1:-0.815990615494;MZF1:-0.822464542015;EN1,2:-0.832833385508;NHLH1,2:-0.836917587993;KLF4:-0.849027364831;HBP1_HMGB_SSRP1_UBTF:-0.849642392006;RREB1:-0.85685138754;HOX{A5,B5}:-0.858677274187;EGR1..3:-0.859716813221;TLX1..3_NFIC{dimer}:-0.877139171365;TFAP4:-0.894220287831;MTF1:-0.932721548123;NKX2-1,4:-0.937192818519;TEAD1:-0.954275214106;IKZF1:-0.963556973073;ZBTB6:-1.00350541116;GTF2I:-1.01604425308;PRDM1:-1.03849479907;PAX5:-1.03932647576;FOX{I1,J2}:-1.05097194419;ZNF384:-1.09317390619;TFAP2{A,C}:-1.09518619101;PATZ1:-1.15886299729;XCPE1{core}:-1.16026600057;TFDP1:-1.1795531902;GCM1,2:-1.28702595043;REST:-1.30865334479;bHLH_family:-1.31110515862;CDC5L:-1.3303971566;GTF2A1,2:-1.34429021265;RBPJ:-1.35278930279;POU6F1:-1.41295506097;TEF:-1.45792402347;PAX1,9:-1.4626878608;TFAP2B:-1.47120712735;FOXD3:-1.49450986985;HIC1:-1.49491218675;T:-1.71787859518;ZNF423:-1.74657513244;ADNP_IRX_SIX_ZHX:-1.87859999256;FOXL1:-1.88453633075;DBP:-1.9552521099;RXR{A,B,G}:-2.02817866209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.1452064383 | |top_motifs=HSF1,2:2.66378505338;TLX2:2.04068133901;FOX{F1,F2,J1}:1.74879332592;NFKB1_REL_RELA:1.3468215698;PAX6:1.27870594624;HMX1:1.10169881176;STAT1,3:1.07380031586;FOXP3:1.03241005614;SREBF1,2:0.910338276538;FOXA2:0.853780168522;SPZ1:0.834033668722;FOXN1:0.797433172016;PDX1:0.740234603284;RXRA_VDR{dimer}:0.739962139759;ATF5_CREB3:0.731665822515;CDX1,2,4:0.7182668472;ARID5B:0.71164881984;RUNX1..3:0.702134795716;ATF2:0.698109748093;IRF1,2:0.687607153899;ESRRA:0.684380176748;ZBTB16:0.612993243127;NFIX:0.612957937399;OCT4_SOX2{dimer}:0.61191459706;AHR_ARNT_ARNT2:0.588188204661;HAND1,2:0.564933238998;NANOG{mouse}:0.563579512432;SPI1:0.490390101174;EVI1:0.486051528303;NKX6-1,2:0.461058796307;ELF1,2,4:0.457321165084;RFX2..5_RFXANK_RFXAP:0.417249112056;RORA:0.381245126748;SPIB:0.339557808932;YY1:0.338659738293;STAT5{A,B}:0.332896669443;HNF4A_NR2F1,2:0.327810557267;POU3F1..4:0.321547955746;FOX{D1,D2}:0.316263612588;PAX2:0.316082189992;CUX2:0.307104890901;POU1F1:0.287427548275;NFY{A,B,C}:0.283246330359;BPTF:0.263860558297;IKZF2:0.253059520549;HMGA1,2:0.241898081893;NKX3-1:0.230348073783;PRRX1,2:0.230266484553;NR5A1,2:0.223081365537;IRF7:0.212554249792;NKX2-2,8:0.207317641716;MYB:0.195836375939;ALX4:0.193429746484;FOSL2:0.18660233055;NKX3-2:0.141907478522;NFE2L1:0.13979593738;ETS1,2:0.130483198914;TGIF1:0.102183243633;HOXA9_MEIS1:0.0962809994332;GLI1..3:0.0941416721398;SRF:0.0937006224115;EP300:0.0672279472982;SOX2:0.0653223384772;FOXQ1:0.0652945335624;LMO2:0.0574500973133;JUN:0.0519368578182;FOXM1:0.050078760795;GATA6:0.0403906932719;CRX:0.0394646435114;LHX3,4:0.0377024929945;SNAI1..3:0.0267650238029;NR6A1:0.0130404768602;POU2F1..3:0.00855874266662;MYFfamily:-0.00942820251076;NKX2-3_NKX2-5:-0.0177179210136;NFE2L2:-0.0281846734225;ATF4:-0.0341985978917;HOX{A6,A7,B6,B7}:-0.0469393696911;ALX1:-0.0558419072119;CREB1:-0.0806628941624;STAT2,4,6:-0.0889824735466;NFE2:-0.0899565381375;ZEB1:-0.0906888469683;BACH2:-0.103258206508;NRF1:-0.10565576395;DMAP1_NCOR{1,2}_SMARC:-0.124620306732;FOXO1,3,4:-0.133616739319;ESR1:-0.135607599112;PBX1:-0.137397295893;TFCP2:-0.14846712702;HES1:-0.171663902732;ZFP161:-0.18739243578;ZNF148:-0.200723653628;TOPORS:-0.205953787688;SMAD1..7,9:-0.210950001181;PITX1..3:-0.220883466782;MYOD1:-0.233455212723;FOXP1:-0.23408295752;ATF6:-0.242007374289;SOX5:-0.243500899111;VSX1,2:-0.245187669971;HNF1A:-0.261770965395;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.265125253975;HIF1A:-0.290888633752;MAFB:-0.304203986415;NANOG:-0.308858653835;ELK1,4_GABP{A,B1}:-0.310777078327;TAL1_TCF{3,4,12}:-0.330568899059;FOS_FOS{B,L1}_JUN{B,D}:-0.333723809491;NFATC1..3:-0.339288010466;MAZ:-0.353517706386;SP1:-0.359808561891;TBP:-0.359879735741;AIRE:-0.369961497459;NFIL3:-0.375051437986;PAX8:-0.388433030941;E2F1..5:-0.392769068406;HOX{A4,D4}:-0.415261681361;GZF1:-0.415658157242;UFEwm:-0.418243326726;SOX17:-0.422006530828;ZNF238:-0.437896483355;PAX4:-0.442438714629;GFI1B:-0.443484277663;ZNF143:-0.45688201925;AR:-0.473947329721;MEF2{A,B,C,D}:-0.479933916879;SOX{8,9,10}:-0.512192894495;TBX4,5:-0.526692367615;GFI1:-0.543964902722;HLF:-0.585163962823;GATA4:-0.585429561934;ZIC1..3:-0.589775784782;LEF1_TCF7_TCF7L1,2:-0.592218127387;NR3C1:-0.636465296168;MYBL2:-0.638023405781;EBF1:-0.64708052913;MED-1{core}:-0.679870857101;ONECUT1,2:-0.690609056239;CEBPA,B_DDIT3:-0.703300882835;POU5F1:-0.709103498271;PPARG:-0.729306380103;RFX1:-0.73152424105;PAX3,7:-0.742947349403;BREu{core}:-0.747073243379;NR1H4:-0.771752240875;MTE{core}:-0.775339384286;TP53:-0.794700763016;XBP1:-0.815990615494;MZF1:-0.822464542015;EN1,2:-0.832833385508;NHLH1,2:-0.836917587993;KLF4:-0.849027364831;HBP1_HMGB_SSRP1_UBTF:-0.849642392006;RREB1:-0.85685138754;HOX{A5,B5}:-0.858677274187;EGR1..3:-0.859716813221;TLX1..3_NFIC{dimer}:-0.877139171365;TFAP4:-0.894220287831;MTF1:-0.932721548123;NKX2-1,4:-0.937192818519;TEAD1:-0.954275214106;IKZF1:-0.963556973073;ZBTB6:-1.00350541116;GTF2I:-1.01604425308;PRDM1:-1.03849479907;PAX5:-1.03932647576;FOX{I1,J2}:-1.05097194419;ZNF384:-1.09317390619;TFAP2{A,C}:-1.09518619101;PATZ1:-1.15886299729;XCPE1{core}:-1.16026600057;TFDP1:-1.1795531902;GCM1,2:-1.28702595043;REST:-1.30865334479;bHLH_family:-1.31110515862;CDC5L:-1.3303971566;GTF2A1,2:-1.34429021265;RBPJ:-1.35278930279;POU6F1:-1.41295506097;TEF:-1.45792402347;PAX1,9:-1.4626878608;TFAP2B:-1.47120712735;FOXD3:-1.49450986985;HIC1:-1.49491218675;T:-1.71787859518;ZNF423:-1.74657513244;ADNP_IRX_SIX_ZHX:-1.87859999256;FOXL1:-1.88453633075;DBP:-1.9552521099;RXR{A,B,G}:-2.02817866209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.1452064383 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11901-125F2;search_select_hide=table117:FF:11901-125F2 | |||
}} | }} |
Latest revision as of 18:27, 4 June 2020
Name: | migratory langerhans cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13535 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13535
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13535
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0173 |
10 | 10 | 0.0265 |
100 | 100 | 0.944 |
101 | 101 | 0.239 |
102 | 102 | 0.492 |
103 | 103 | 0.0287 |
104 | 104 | 0.7 |
105 | 105 | 0.121 |
106 | 106 | 0.102 |
107 | 107 | 0.919 |
108 | 108 | 0.643 |
109 | 109 | 0.0665 |
11 | 11 | 0.173 |
110 | 110 | 0.274 |
111 | 111 | 0.0425 |
112 | 112 | 0.0311 |
113 | 113 | 0.859 |
114 | 114 | 0.00846 |
115 | 115 | 0.267 |
116 | 116 | 0.54 |
117 | 117 | 0.0158 |
118 | 118 | 0.0695 |
119 | 119 | 0.0161 |
12 | 12 | 0.631 |
120 | 120 | 0.707 |
121 | 121 | 0.884 |
122 | 122 | 0.842 |
123 | 123 | 0.666 |
124 | 124 | 0.182 |
125 | 125 | 0.901 |
126 | 126 | 0.049 |
127 | 127 | 0.087 |
128 | 128 | 0.0625 |
129 | 129 | 0.253 |
13 | 13 | 0.0264 |
130 | 130 | 0.85 |
131 | 131 | 0.472 |
132 | 132 | 0.385 |
133 | 133 | 0.963 |
134 | 134 | 0.957 |
135 | 135 | 0.375 |
136 | 136 | 0.636 |
137 | 137 | 0.1 |
138 | 138 | 0.761 |
139 | 139 | 0.237 |
14 | 14 | 0.595 |
140 | 140 | 0.00661 |
141 | 141 | 0.65 |
142 | 142 | 0.196 |
143 | 143 | 0.379 |
144 | 144 | 0.627 |
145 | 145 | 0.352 |
146 | 146 | 0.997 |
147 | 147 | 0.175 |
148 | 148 | 0.0431 |
149 | 149 | 0.702 |
15 | 15 | 0.085 |
150 | 150 | 0.672 |
151 | 151 | 0.659 |
152 | 152 | 0.491 |
153 | 153 | 0.867 |
154 | 154 | 0.265 |
155 | 155 | 0.0661 |
156 | 156 | 0.703 |
157 | 157 | 0.65 |
158 | 158 | 0.126 |
159 | 159 | 0.986 |
16 | 16 | 0.202 |
160 | 160 | 0.471 |
161 | 161 | 0.0913 |
162 | 162 | 0.648 |
163 | 163 | 0.814 |
164 | 164 | 0.428 |
165 | 165 | 0.0286 |
166 | 166 | 0.708 |
167 | 167 | 0.661 |
168 | 168 | 0.261 |
169 | 169 | 0.0801 |
17 | 17 | 0.566 |
18 | 18 | 0.455 |
19 | 19 | 0.609 |
2 | 2 | 0.958 |
20 | 20 | 0.248 |
21 | 21 | 0.219 |
22 | 22 | 0.762 |
23 | 23 | 0.393 |
24 | 24 | 0.738 |
25 | 25 | 0.271 |
26 | 26 | 0.352 |
27 | 27 | 0.729 |
28 | 28 | 0.487 |
29 | 29 | 0.0938 |
3 | 3 | 0.0545 |
30 | 30 | 0.57 |
31 | 31 | 0.69 |
32 | 32 | 0.475 |
33 | 33 | 0.312 |
34 | 34 | 0.93 |
35 | 35 | 0.369 |
36 | 36 | 0.0776 |
37 | 37 | 0.187 |
38 | 38 | 0.363 |
39 | 39 | 0.989 |
4 | 4 | 0.408 |
40 | 40 | 0.156 |
41 | 41 | 0.28 |
42 | 42 | 0.19 |
43 | 43 | 0.124 |
44 | 44 | 0.0116 |
45 | 45 | 0.974 |
46 | 46 | 0.0873 |
47 | 47 | 0.137 |
48 | 48 | 0.263 |
49 | 49 | 0.076 |
5 | 5 | 0.439 |
50 | 50 | 0.874 |
51 | 51 | 0.269 |
52 | 52 | 0.195 |
53 | 53 | 0.528 |
54 | 54 | 0.433 |
55 | 55 | 0.557 |
56 | 56 | 0.881 |
57 | 57 | 0.169 |
58 | 58 | 0.0418 |
59 | 59 | 0.283 |
6 | 6 | 0.741 |
60 | 60 | 0.112 |
61 | 61 | 0.566 |
62 | 62 | 0.0238 |
63 | 63 | 0.486 |
64 | 64 | 0.32 |
65 | 65 | 0.508 |
66 | 66 | 0.244 |
67 | 67 | 0.255 |
68 | 68 | 0.75 |
69 | 69 | 0.699 |
7 | 7 | 0.103 |
70 | 70 | 0.027 |
71 | 71 | 0.0514 |
72 | 72 | 0.226 |
73 | 73 | 0.924 |
74 | 74 | 0.721 |
75 | 75 | 0.083 |
76 | 76 | 0.499 |
77 | 77 | 0.914 |
78 | 78 | 0.0284 |
79 | 79 | 0.857 |
8 | 8 | 0.513 |
80 | 80 | 0.98 |
81 | 81 | 0.394 |
82 | 82 | 0.172 |
83 | 83 | 0.231 |
84 | 84 | 0.257 |
85 | 85 | 0.401 |
86 | 86 | 0.319 |
87 | 87 | 0.381 |
88 | 88 | 0.306 |
89 | 89 | 0.535 |
9 | 9 | 0.94 |
90 | 90 | 0.00705 |
91 | 91 | 0.436 |
92 | 92 | 0.431 |
93 | 93 | 0.793 |
94 | 94 | 0.0813 |
95 | 95 | 0.152 |
96 | 96 | 0.00189 |
97 | 97 | 0.728 |
98 | 98 | 0.163 |
99 | 99 | 0.656 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13535
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011136 human migratory langerhans cells sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011136 (human migratory langerhans cells sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)