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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004851
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004851
|HumanCAGEScanFiles=NCig10051;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Preadipocyte%2520-%2520omental%252c%2520donor1.NCig10051.11468-119C1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Preadipocyte%2520-%2520omental%252c%2520donor1.NCig10051.11468-119C1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Preadipocyte%2520-%2520omental%252c%2520donor1.NCig10051.11468-119C1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Preadipocyte%2520-%2520omental%252c%2520donor1.NCig10051.11468-119C1.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008409;DRR009281;DRZ000706;DRZ002091;DRZ012056;DRZ013441
|accession_numbers_RNASeq=sRNA-Seq;DRX037081;DRR041447;DRZ007089
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002579
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002579
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.24!172.99!TCF21;;chr2:19558373..19558392,-!p1@OSR1!1.63!110.58!OSR1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.55!34.47!ZBED1;;chr8:72756637..72756664,-!p3@MSC!1.53!37.16!MSC;;chr9:96717629..96717644,-!p1@BARX1!1.48!29.47!BARX1;;chr14:62162285..62162296,+!p3@HIF1A!1.44!132.75!HIF1A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.65!HOXC5;;chr14:62162258..62162269,+!p2@HIF1A!1.43!242.57!HIF1A;;chr19:47523058..47523114,+!p1@NPAS1!1.36!21.66!NPAS1;;chr18:53068911..53068935,-!p4@TCF4!1.33!23.19!TCF4;;chr1:170632285..170632309,+!p1@PRRX1!1.32!22.42!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.30!95.34!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.29!56.64!GATA6;;chr8:72756667..72756736,-!p2@MSC!1.29!28.45!MSC;;chr12:54402745..54402788,+!p1@HOXC8!1.27!17.81!HOXC8;;chr18:19749386..19749404,+!p2@GATA6!1.26!24.73!GATA6;;chr8:25902876..25902936,-!p1@EBF2!1.26!17.04!EBF2;;chr2:239756671..239756732,+!p1@TWIST2!1.21!48.31!TWIST2;;chr4:174450089..174450153,-!p2@HAND2!1.21!15.25!HAND2;;chr17:46682321..46682362,-!p1@HOXB6!1.21!15.25!HOXB6;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.86!CREB3L1;;chr15:96874145..96874166,+!p7@NR2F2!1.18!26.91!NR2F2;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.84!PRRX2;;chr8:49833948..49833973,-!p2@SNAI2!1.15!82.65!SNAI2;;chr2:8822176..8822196,+!p1@ID2!1.14!1776.65!ID2;;chr8:72756267..72756296,-!p4@MSC!1.13!18.58!MSC;;chr2:239756739..239756755,+!p2@TWIST2!1.12!20.63!TWIST2;;chr1:23885981..23886002,-!p1@ID3!1.10!1993.20!ID3;;chr7:27183291..27183324,-!p1@HOXA5!1.10!11.53!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!1.07!10.76!HOXA5;;chr19:50432453..50432468,+!p1@ATF5!1.05!574.58!ATF5;;chr6:19837592..19837621,+!p1@ID4!1.04!62.28!ID4;;chr5:92918919..92918942,+!p1@NR2F1!1.03!43.95!NR2F1;;chr8:72756213..72756243,-!p5@MSC!1.03!12.69!MSC;;chr1:170633058..170633084,+!p5@PRRX1!1.02!9.48!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!1.02!9.35!HOXC9;;chr15:96869255..96869291,+!p6@NR2F2!1.01!17.17!NR2F2;;chr1:170632959..170632987,+!p4@PRRX1!1.01!10.12!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!1.00!41.77!FOXD1;;chr16:31076332..31076388,-!p3@ZNF668!1.00!8.97!ZNF668;;chrX:106960180..106960197,-!p2@TSC22D3!0.99!33.96!TSC22D3;;chr9:132427972..132428056,+!p1@PRRX2!0.98!11.15!PRRX2;;chr10:63809013..63809041,+!p3@ARID5B!0.97!47.28!ARID5B;;chr15:96874244..96874259,+!p5@NR2F2!0.97!20.50!NR2F2;;chr20:30193083..30193098,+!p1@ID1!0.96!669.27!ID1;;chr15:42749722..42749739,-!p2@ZFP106!0.96!14.99!ZFP106;;chr8:72756063..72756125,-!p1@MSC!0.95!16.53!MSC;;chr8:72756380..72756427,-!p8@MSC!0.95!7.94!MSC;;chr2:119605214..119605230,-!p1@EN1!0.95!7.94!EN1;;chr8:106330656..106330684,+!p1@ZFPM2!0.94!20.63!ZFPM2;;chr7:27192185..27192209,-!p1@HOXA3!0.94!7.69!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.92!10.76!HOXB7;;chr15:96873984..96873999,+!p3@NR2F2!0.91!54.59!NR2F2;;chr4:174451370..174451387,-!p1@HAND2!0.91!7.18!HAND2;;chr10:131762504..131762555,-!p1@EBF3!0.90!6.92!EBF3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.90!6.92!HOXC5;;chr7:150946015..150946070,-!p3@SMARCD3!0.88!14.74!SMARCD3;;chr14:62203595..62203676,+!p4@HIF1A!0.88!12.69!HIF1A;;chr9:96717678..96717689,-!p2@BARX1!0.88!6.66!BARX1;;chr13:45151259..45151326,-!p2@TSC22D1!0.87!40.36!TSC22D1;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.74!NFIX;;chr17:46687959..46688007,-!p2@HOXB7!0.87!8.97!HOXB7;;chr2:119604456..119604501,-!p2@EN1!0.86!6.28!EN1;;chr17:1959369..1959388,+!p2@HIC1!0.85!16.79!HIC1;;chr2:85981027..85981047,+!p8@ATOH8!0.85!6.15!ATOH8;;chr14:62164416..62164443,+!p27@HIF1A!0.85!6.02!HIF1A;;chr10:77161504..77161530,-!p1@ZNF503!0.84!84.32!ZNF503;;chr15:96874012..96874042,+!p2@NR2F2!0.84!56.38!NR2F2;;chr12:54394309..54394336,+!p2@HOXC9!0.84!5.89!HOXC9;;chr11:12696071..12696086,+!p3@TEAD1!0.83!7.82!TEAD1;;chr14:62162224..62162254,+!p1@HIF1A!0.82!874.93!HIF1A;;chr8:49833978..49833996,-!p1@SNAI2!0.82!125.45!SNAI2;;chr12:80085061..80085119,-!p6@PAWR!0.82!9.23!PAWR;;chr8:106330696..106330719,+!p2@ZFPM2!0.82!7.30!ZFPM2;;chr6:144329384..144329405,-!p1@PLAGL1!0.81!69.20!PLAGL1;;chr5:72744445..72744466,-!p2@FOXD1!0.81!9.48!FOXD1;;chr15:96876966..96877017,+!p12@NR2F2!0.81!8.07!NR2F2;;chr14:95236551..95236576,-!p2@GSC!0.81!5.51!GSC;;chr17:46132044..46132080,+!p4@NFE2L1!0.81!5.51!NFE2L1;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.51!GATA6;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!58.18!GLIS2;;chr15:96869292..96869320,+!p15@NR2F2!0.80!7.94!NR2F2;;chr8:72755987..72756002,-!p7@MSC!0.80!5.38!MSC;;chr7:150945754..150945789,-!p2@SMARCD3!0.79!17.04!SMARCD3;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.92!SKIL;;chr1:158979872..158979898,+!p3@IFI16!0.78!16.66!IFI16;;chr6:32095523..32095564,-!p2@ATF6B!0.78!7.05!ATF6B;;chr15:96874216..96874236,+!p13@NR2F2!0.77!7.94!NR2F2;;chr5:92919100..92919135,+!p3@NR2F1!0.77!6.02!NR2F1;;chr6:126102292..126102329,+!p3@NCOA7!0.76!17.04!NCOA7;;chr15:96869114..96869160,+!p11@NR2F2!0.76!6.66!NR2F2;;chr17:46675420..46675465,-!p3@HOXB6!0.76!5.64!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.76!4.74!HOXB7;;chr12:54410948..54410992,+!p3@HOXC5!0.76!4.74!HOXC5;;chr12:57914286..57914304,-!p1@DDIT3!0.75!186.19!DDIT3;;chr17:46621937..46621966,-!p2@HOXB2!0.75!13.71!HOXB2;;chr1:170633262..170633285,+!p3@PRRX1!0.74!5.25!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.74!4.48!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.74!4.48!CREB3L1;;chr2:85981008..85981025,+!p7@ATOH8!0.74!4.48!ATOH8;;chr7:27153454..27153469,-!p2@HOXA3!0.74!4.48!HOXA3;;chr10:63809106..63809127,+!p1@ARID5B!0.73!66.12!ARID5B;;chr2:85980951..85981004,+!p1@ATOH8!0.73!7.43!ATOH8;;chr4:4861385..4861398,+!p1@MSX1!0.72!13.84!MSX1;;chr5:88081308..88081333,-!p8@MEF2C!0.72!4.23!MEF2C;;chr10:31610110..31610159,+!p2@ZEB1!0.72!4.23!ZEB1;;chr12:54422217..54422239,+!p3@HOXC6!0.72!4.23!HOXC6;;chr15:96873921..96873946,+!p1@NR2F2!0.71!132.75!NR2F2;;chr14:75894714..75894733,+!p1@JDP2!0.70!128.40!JDP2;;chr12:26277956..26277980,-!p1@BHLHE41!0.70!15.89!BHLHE41;;chr2:121493425..121493474,+!p1@GLI2!0.70!9.48!GLI2;;chr19:47922750..47922795,-!p1@MEIS3!0.70!6.92!MEIS3;;chr1:170633348..170633399,+!p2@PRRX1!0.70!5.77!PRRX1;;chr17:46659728..46659749,-!p3@HOXB3!0.70!3.97!HOXB3;;chr7:1577899..1577943,+!p3@MAFK!0.70!3.97!MAFK;;chr7:27142290..27142310,-!p1@HOXA2!0.70!3.97!HOXA2;;chr7:27196267..27196311,-!p1@HOXA7!0.70!3.97!HOXA7;;chr10:63809077..63809089,+!p5@ARID5B!0.69!9.23!ARID5B;;chr13:45151403..45151433,-!p5@TSC22D1!0.69!9.23!TSC22D1;;chr1:158985493..158985535,+!p4@IFI16!0.69!6.28!IFI16;;chr18:3450334..3450341,+!p15@TGIF1!0.69!5.25!TGIF1;;chr10:31288398..31288455,-!p2@ZNF438!0.69!4.61!ZNF438;;chr11:125034640..125034655,+!p1@PKNOX2!0.69!3.84!PKNOX2;;chr12:54402790..54402805,+!p2@HOXC8!0.69!3.84!HOXC8;;chr13:37494275..37494304,-!p2@SMAD9!0.69!3.84!SMAD9;;chr2:85981073..85981091,+!p5@ATOH8!0.69!3.84!ATOH8;;chr5:158526917..158526932,-!p1@EBF1!0.68!10.51!EBF1;;chr1:158979851..158979865,+!p5@IFI16!0.68!9.10!IFI16;;chr12:48298765..48298783,-!p2@VDR!0.68!8.59!VDR;;chr19:13134457..13134462,+!p5@NFIX!0.68!7.30!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.67!98.41!NFIX;;chr11:8102846..8102892,+!p1@TUB!0.67!5.38!TUB;;chr13:45150455..45150472,-!p8@TSC22D1!0.67!3.72!TSC22D1;;chr2:46524537..46524553,+!p1@EPAS1!0.66!413.63!EPAS1;;chr17:46691732..46691766,-!p4@HOXB8!0.66!3.59!HOXB8;;chr17:38498594..38498661,+!p2@RARA!0.65!13.20!RARA;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.61!FOXC2;;chr14:62213827..62213853,+!p6@HIF1A!0.65!5.25!HIF1A;;chr3:141105705..141105770,+!p4@ZBTB38!0.65!4.36!ZBTB38;;chr14:95236440..95236465,-!p1@GSC!0.65!3.46!GSC;;chr10:114889045..114889074,+!p12@TCF7L2!0.65!3.46!TCF7L2;;chr7:150945865..150945896,-!p4@SMARCD3!0.65!3.46!SMARCD3;;chr7:27183114..27183138,-!p3@HOXA5!0.65!3.46!HOXA5;;chr15:96874927..96874938,+!p8@NR2F2!0.64!7.94!NR2F2;;chr18:53070846..53070902,-!p6@TCF4!0.64!3.33!TCF4;;chr18:19749517..19749531,+!p3@GATA6!0.63!6.41!GATA6;;chr2:28618532..28618610,+!p4@FOSL2!0.63!6.02!FOSL2;;chr15:96875041..96875052,+!p17@NR2F2!0.63!5.00!NR2F2;;chr3:126076242..126076257,-!p1@KLF15!0.63!4.23!KLF15;;chr2:208030647..208030689,-!p1@KLF7!0.62!31.52!KLF7;;chr2:178128149..178128198,-!p2@NFE2L2!0.62!19.86!NFE2L2;;chr15:66994663..66994680,+!p1@SMAD6!0.62!8.46!SMAD6;;chr2:85981222..85981259,+!p2@ATOH8!0.62!5.64!ATOH8;;chr12:80085255..80085284,-!p9@PAWR!0.62!5.00!PAWR;;chr19:50435736..50435781,+!p3@ATF5!0.62!4.61!ATF5;;chr1:170632250..170632277,+!p7@PRRX1!0.62!3.20!PRRX1;;chr17:46667628..46667642,-!p2@HOXB3!0.62!3.20!HOXB3;;chr2:85981107..85981120,+!p3@ATOH8!0.62!3.20!ATOH8;;chr5:139492456..139492489,+!p7@PURA!0.62!3.20!PURA;;chr3:178789522..178789564,-!p2@ZMAT3!0.61!27.17!ZMAT3;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.51!GLI2;;chr12:54447599..54447630,+!p3@HOXC4!0.61!3.97!HOXC4;;chr5:92919068..92919082,+!p5@NR2F1!0.61!3.84!NR2F1;;chr8:72756194..72756208,-!p9@MSC!0.61!3.08!MSC;;chr8:72756522..72756533,-!p13@MSC!0.61!3.08!MSC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.61!3.08!RUNX1T1;;chr12:54402729..54402743,+!p3@HOXC8!0.61!3.08!HOXC8;;chr17:46675558..46675577,-!p2@HOXB6!0.61!3.08!HOXB6;;chr18:53068893..53068902,-!p28@TCF4!0.61!3.08!TCF4;;chr12:54447637..54447659,+!p4@HOXC4!0.60!2.95!HOXC4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.59!255.13!TAX1BP3;;chr18:3450293..3450304,+!p4@TGIF1!0.59!8.20!TGIF1;;chr14:62203749..62203798,+!p5@HIF1A!0.59!4.87!HIF1A;;chr6:1389789..1389821,+!p1@FOXF2!0.59!4.23!FOXF2;;chr6:85473156..85473210,-!p2@TBX18!0.59!3.72!TBX18;;chr17:46126136..46126152,+!p1@NFE2L1!0.58!178.24!NFE2L1;;chr5:139487608..139487663,+!p3@PURA!0.58!6.79!PURA;;chr20:48807456..48807475,+!p3@CEBPB!0.58!6.02!CEBPB;;chr3:107318157..107318172,+!p6@BBX!0.58!4.23!BBX;;chr1:170632723..170632739,+!p8@PRRX1!0.58!2.82!PRRX1;;chr6:1389989..1390019,+!p2@FOXF2!0.58!2.82!FOXF2;;chr19:13135582..13135600,+!p3@NFIX!0.58!2.82!NFIX;;chr10:45495946..45495976,+!p2@ZNF22!0.58!2.82!ZNF22;;chr18:3449720..3449749,+!p2@TGIF1!0.57!6.54!TGIF1;;chr16:67881588..67881612,-!p2@CENPT!0.57!3.97!CENPT;;chr1:170632115..170632136,+!p9@PRRX1!0.57!2.69!PRRX1;;chr11:46333934..46333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chr17:46687935..46687950,-!p3@HOXB7!0.76!4.74!HOXB7;;chr12:54410948..54410992,+!p3@HOXC5!0.76!4.74!HOXC5;;chr12:57914286..57914304,-!p1@DDIT3!0.75!186.19!DDIT3;;chr17:46621937..46621966,-!p2@HOXB2!0.75!13.71!HOXB2;;chr1:170633262..170633285,+!p3@PRRX1!0.74!5.25!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.74!4.48!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.74!4.48!CREB3L1;;chr2:85981008..85981025,+!p7@ATOH8!0.74!4.48!ATOH8;;chr7:27153454..27153469,-!p2@HOXA3!0.74!4.48!HOXA3;;chr10:63809106..63809127,+!p1@ARID5B!0.73!66.12!ARID5B;;chr2:85980951..85981004,+!p1@ATOH8!0.73!7.43!ATOH8;;chr4:4861385..4861398,+!p1@MSX1!0.72!13.84!MSX1;;chr5:88081308..88081333,-!p8@MEF2C!0.72!4.23!MEF2C;;chr10:31610110..31610159,+!p2@ZEB1!0.72!4.23!ZEB1;;chr12:54422217..54422239,+!p3@HOXC6!0.72!4.23!HOXC6;;chr15:96873921..96873946,+!p1@NR2F2!0.71!132.75!NR2F2;;chr14:75894714..75894733,+!p1@JDP2!0.70!128.40!JDP2;;chr12:26277956..26277980,-!p1@BHLHE41!0.70!15.89!BHLHE41;;chr2:121493425..121493474,+!p1@GLI2!0.70!9.48!GLI2;;chr19:47922750..47922795,-!p1@MEIS3!0.70!6.92!MEIS3;;chr1:170633348..170633399,+!p2@PRRX1!0.70!5.77!PRRX1;;chr17:46659728..46659749,-!p3@HOXB3!0.70!3.97!HOXB3;;chr7:1577899..1577943,+!p3@MAFK!0.70!3.97!MAFK;;chr7:27142290..27142310,-!p1@HOXA2!0.70!3.97!HOXA2;;chr7:27196267..27196311,-!p1@HOXA7!0.70!3.97!HOXA7;;chr10:63809077..63809089,+!p5@ARID5B!0.69!9.23!ARID5B;;chr13:45151403..45151433,-!p5@TSC22D1!0.69!9.23!TSC22D1;;chr1:158985493..158985535,+!p4@IFI16!0.69!6.28!IFI16;;chr18:3450334..3450341,+!p15@TGIF1!0.69!5.25!TGIF1;;chr10:31288398..31288455,-!p2@ZNF438!0.69!4.61!ZNF438;;chr11:125034640..125034655,+!p1@PKNOX2!0.69!3.84!PKNOX2;;chr12:54402790..54402805,+!p2@HOXC8!0.69!3.84!HOXC8;;chr13:37494275..37494304,-!p2@SMAD9!0.69!3.84!SMAD9;;chr2:85981073..85981091,+!p5@ATOH8!0.69!3.84!ATOH8;;chr5:158526917..158526932,-!p1@EBF1!0.68!10.51!EBF1;;chr1:158979851..158979865,+!p5@IFI16!0.68!9.10!IFI16;;chr12:48298765..48298783,-!p2@VDR!0.68!8.59!VDR;;chr19:13134457..13134462,+!p5@NFIX!0.68!7.30!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.67!98.41!NFIX;;chr11:8102846..8102892,+!p1@TUB!0.67!5.38!TUB;;chr13:45150455..45150472,-!p8@TSC22D1!0.67!3.72!TSC22D1;;chr2:46524537..46524553,+!p1@EPAS1!0.66!413.63!EPAS1;;chr17:46691732..46691766,-!p4@HOXB8!0.66!3.59!HOXB8;;chr17:38498594..38498661,+!p2@RARA!0.65!13.20!RARA;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.61!FOXC2;;chr14:62213827..62213853,+!p6@HIF1A!0.65!5.25!HIF1A;;chr3:141105705..141105770,+!p4@ZBTB38!0.65!4.36!ZBTB38;;chr14:95236440..95236465,-!p1@GSC!0.65!3.46!GSC;;chr10:114889045..114889074,+!p12@TCF7L2!0.65!3.46!TCF7L2;;chr7:150945865..150945896,-!p4@SMARCD3!0.65!3.46!SMARCD3;;chr7:27183114..27183138,-!p3@HOXA5!0.65!3.46!HOXA5;;chr15:96874927..96874938,+!p8@NR2F2!0.64!7.94!NR2F2;;chr18:53070846..53070902,-!p6@TCF4!0.64!3.33!TCF4;;chr18:19749517..19749531,+!p3@GATA6!0.63!6.41!GATA6;;chr2:28618532..28618610,+!p4@FOSL2!0.63!6.02!FOSL2;;chr15:96875041..96875052,+!p17@NR2F2!0.63!5.00!NR2F2;;chr3:126076242..126076257,-!p1@KLF15!0.63!4.23!KLF15;;chr2:208030647..208030689,-!p1@KLF7!0.62!31.52!KLF7;;chr2:178128149..178128198,-!p2@NFE2L2!0.62!19.86!NFE2L2;;chr15:66994663..66994680,+!p1@SMAD6!0.62!8.46!SMAD6;;chr2:85981222..85981259,+!p2@ATOH8!0.62!5.64!ATOH8;;chr12:80085255..80085284,-!p9@PAWR!0.62!5.00!PAWR;;chr19:50435736..50435781,+!p3@ATF5!0.62!4.61!ATF5;;chr1:170632250..170632277,+!p7@PRRX1!0.62!3.20!PRRX1;;chr17:46667628..46667642,-!p2@HOXB3!0.62!3.20!HOXB3;;chr2:85981107..85981120,+!p3@ATOH8!0.62!3.20!ATOH8;;chr5:139492456..139492489,+!p7@PURA!0.62!3.20!PURA;;chr3:178789522..178789564,-!p2@ZMAT3!0.61!27.17!ZMAT3;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.51!GLI2;;chr12:54447599..54447630,+!p3@HOXC4!0.61!3.97!HOXC4;;chr5:92919068..92919082,+!p5@NR2F1!0.61!3.84!NR2F1;;chr8:72756194..72756208,-!p9@MSC!0.61!3.08!MSC;;chr8:72756522..72756533,-!p13@MSC!0.61!3.08!MSC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.61!3.08!RUNX1T1;;chr12:54402729..54402743,+!p3@HOXC8!0.61!3.08!HOXC8;;chr17:46675558..46675577,-!p2@HOXB6!0.61!3.08!HOXB6;;chr18:53068893..53068902,-!p28@TCF4!0.61!3.08!TCF4;;chr12:54447637..54447659,+!p4@HOXC4!0.60!2.95!HOXC4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.59!255.13!TAX1BP3;;chr18:3450293..3450304,+!p4@TGIF1!0.59!8.20!TGIF1;;chr14:62203749..62203798,+!p5@HIF1A!0.59!4.87!HIF1A;;chr6:1389789..1389821,+!p1@FOXF2!0.59!4.23!FOXF2;;chr6:85473156..85473210,-!p2@TBX18!0.59!3.72!TBX18;;chr17:46126136..46126152,+!p1@NFE2L1!0.58!178.24!NFE2L1;;chr5:139487608..139487663,+!p3@PURA!0.58!6.79!PURA;;chr20:48807456..48807475,+!p3@CEBPB!0.58!6.02!CEBPB;;chr3:107318157..107318172,+!p6@BBX!0.58!4.23!BBX;;chr1:170632723..170632739,+!p8@PRRX1!0.58!2.82!PRRX1;;chr6:1389989..1390019,+!p2@FOXF2!0.58!2.82!FOXF2;;chr19:13135582..13135600,+!p3@NFIX!0.58!2.82!NFIX;;chr10:45495946..45495976,+!p2@ZNF22!0.58!2.82!ZNF22;;chr18:3449720..3449749,+!p2@TGIF1!0.57!6.54!TGIF1;;chr16:67881588..67881612,-!p2@CENPT!0.57!3.97!CENPT;;chr1:170632115..170632136,+!p9@PRRX1!0.57!2.69!PRRX1;;chr11:46333934..46333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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002579;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg38.nobarcode.ctss.bed.gz
|id=FF:11468-119C1
|id=FF:11468-119C1
|is_a=EFO:0002091;;FF:0000140
|is_a=EFO:0002091;;FF:0000140
|is_obsolete=
|is_obsolete=
|library_id=CNhs11065
|library_id_phase_based=2:CNhs11065
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11468
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.CCGTCC.11468
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11468
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.CCGTCC.11468
|name=Preadipocyte - omental, donor1
|name=Preadipocyte - omental, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 66:
|profile_cagescan=NCig10051,,,
|profile_cagescan=NCig10051,,,
|profile_hcage=CNhs11065,LSID723,release008,COMPLETED
|profile_hcage=CNhs11065,LSID723,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10006,,,
|profile_srnaseq=SRhi10006,,,
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|rna_catalog_number=N/A
Line 60: Line 83:
|rna_tube_id=119C1
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|rna_weight_ug=11.8
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|sample_age=58
|sample_age=58
|sample_category=primary cells
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|sample_cell_catalog=F-OP-F
|sample_cell_line=
|sample_cell_line=
Line 82: Line 107:
|top_motifs=TAL1_TCF{3,4,12}:2.37535353476;HIF1A:2.22782089852;HMGA1,2:2.1544250167;GZF1:2.05895595024;ESR1:1.93665325315;MYBL2:1.8923182423;NKX3-1:1.88351741287;TEF:1.81935242524;IKZF1:1.7959183239;RXRA_VDR{dimer}:1.75294725866;HOX{A5,B5}:1.72683946664;HES1:1.71792719606;GLI1..3:1.6783957263;FOXL1:1.65776601795;TEAD1:1.65285563854;MAFB:1.61140198655;XBP1:1.55990425847;NFIX:1.51432436033;UFEwm:1.47545087888;NFE2L1:1.45788852056;NKX2-2,8:1.41236785758;HOX{A4,D4}:1.40707148031;HBP1_HMGB_SSRP1_UBTF:1.39538347951;EBF1:1.38473850142;ATF6:1.32778524434;ZNF238:1.32327873248;SMAD1..7,9:1.2814499772;ZNF423:1.21837101284;EVI1:1.19195367569;SPZ1:1.17030678207;NR3C1:1.14377041617;NKX2-1,4:1.13920681536;AIRE:1.1145731877;TP53:1.06923641413;KLF4:1.05711352243;GCM1,2:1.02618371192;TFAP4:1.01584127823;PAX1,9:0.998451362979;NFATC1..3:0.977454987614;RXR{A,B,G}:0.963093053231;EN1,2:0.95836469823;TLX1..3_NFIC{dimer}:0.955573135353;HLF:0.909493591821;SRF:0.885980536019;DBP:0.879365046344;FOXO1,3,4:0.873549621849;ADNP_IRX_SIX_ZHX:0.863464555166;MTE{core}:0.862888249812;NHLH1,2:0.862041501247;GTF2I:0.851771654146;HMX1:0.801272249323;ALX4:0.792436265223;TFAP2B:0.76899676467;MAZ:0.768414323789;bHLH_family:0.739519080071;NANOG{mouse}:0.731243637116;GTF2A1,2:0.705681676156;ZNF148:0.694872504698;HOX{A6,A7,B6,B7}:0.682433989454;SREBF1,2:0.681634122643;CDC5L:0.646291550568;HIC1:0.622020363895;NR6A1:0.618892258715;LHX3,4:0.612535778847;HSF1,2:0.6110090737;PAX5:0.596375702656;TBX4,5:0.582948009155;HAND1,2:0.578705767549;TFAP2{A,C}:0.553251433812;GATA4:0.528533183121;MYFfamily:0.511384192495;NFE2L2:0.505923834702;PATZ1:0.470594701559;SOX17:0.470367380897;FOXA2:0.458325883441;ZNF384:0.421225212834;TFCP2:0.418244710848;MZF1:0.415869472443;T:0.344773795863;POU6F1:0.344386923899;STAT1,3:0.341307014891;NKX3-2:0.325396139184;ARID5B:0.324927668611;MTF1:0.313066190885;STAT2,4,6:0.311717658735;ESRRA:0.285292428346;MEF2{A,B,C,D}:0.269273580108;CEBPA,B_DDIT3:0.26627022975;FOX{D1,D2}:0.250474465988;PRDM1:0.244028913319;EP300:0.209759054215;PAX4:0.181263860247;AHR_ARNT_ARNT2:0.166007471519;XCPE1{core}:0.160544267991;STAT5{A,B}:0.156164967358;GFI1B:0.104103547155;TBP:0.0890242999507;ELK1,4_GABP{A,B1}:0.0399337661452;ZIC1..3:0.00235698496911;PAX6:-0.00336821911351;IRF1,2:-0.00792271643188;HNF1A:-0.013465836671;TGIF1:-0.0171606306756;REST:-0.0238030660977;ZNF143:-0.0250329990931;FOX{I1,J2}:-0.0533420818048;ZBTB6:-0.0626887989114;BACH2:-0.0696171905422;SOX5:-0.0959221055676;NFIL3:-0.129083900964;FOXM1:-0.132801152472;EGR1..3:-0.152597548836;NRF1:-0.160779479561;RREB1:-0.175897069146;AR:-0.185346305176;MED-1{core}:-0.207920646438;TLX2:-0.208676707015;PAX2:-0.223641094252;MYB:-0.226579244523;ZFP161:-0.242041803707;FOXP3:-0.258515570228;HNF4A_NR2F1,2:-0.259941035043;RFX1:-0.265147561444;ZBTB16:-0.273826036863;TOPORS:-0.286572099171;YY1:-0.287676521682;JUN:-0.299512086864;HOXA9_MEIS1:-0.309656366469;FOSL2:-0.329020999;FOXN1:-0.331652803437;FOS_FOS{B,L1}_JUN{B,D}:-0.338589333724;VSX1,2:-0.349872207077;ATF2:-0.352690007033;POU3F1..4:-0.355223577113;SP1:-0.373735390563;CRX:-0.374672737281;SOX2:-0.391891053393;NKX6-1,2:-0.391966547851;FOXD3:-0.399571152274;ATF5_CREB3:-0.409022093825;PAX3,7:-0.415415263771;ETS1,2:-0.426202254798;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.429136206625;CREB1:-0.435515354943;NFE2:-0.436730798055;RUNX1..3:-0.439415593905;ATF4:-0.476614439217;DMAP1_NCOR{1,2}_SMARC:-0.512608577097;SPI1:-0.532494021793;LEF1_TCF7_TCF7L1,2:-0.54435085334;PPARG:-0.55003879704;PRRX1,2:-0.578831408042;LMO2:-0.585654974329;ELF1,2,4:-0.593506504176;TFDP1:-0.597933526311;IRF7:-0.60870098128;BPTF:-0.6335351223;GATA6:-0.67665528772;FOXQ1:-0.676835096684;NFKB1_REL_RELA:-0.682881995784;IKZF2:-0.688191496516;CUX2:-0.694944286535;SPIB:-0.699440361928;ONECUT1,2:-0.704806358509;POU5F1:-0.710553794836;ZEB1:-0.737750535641;SNAI1..3:-0.7580819445;PAX8:-0.782916299359;CDX1,2,4:-0.821428601941;NR1H4:-0.823928580915;POU1F1:-0.839370493444;GFI1:-0.842652876878;FOXP1:-0.865007674655;BREu{core}:-0.886547894826;FOX{F1,F2,J1}:-0.902471509591;RORA:-0.904645211913;OCT4_SOX2{dimer}:-0.906742130807;RBPJ:-1.00385752131;NKX2-3_NKX2-5:-1.06798517797;RFX2..5_RFXANK_RFXAP:-1.07213150495;MYOD1:-1.07282990604;NR5A1,2:-1.08270538873;E2F1..5:-1.12108213233;SOX{8,9,10}:-1.17569188729;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18570025342;NANOG:-1.19041547029;PITX1..3:-1.19627298493;NFY{A,B,C}:-1.28402260705;PDX1:-1.48223155471;PBX1:-1.50952453097;ALX1:-1.81351213982;POU2F1..3:-2.38422253686
|top_motifs=TAL1_TCF{3,4,12}:2.37535353476;HIF1A:2.22782089852;HMGA1,2:2.1544250167;GZF1:2.05895595024;ESR1:1.93665325315;MYBL2:1.8923182423;NKX3-1:1.88351741287;TEF:1.81935242524;IKZF1:1.7959183239;RXRA_VDR{dimer}:1.75294725866;HOX{A5,B5}:1.72683946664;HES1:1.71792719606;GLI1..3:1.6783957263;FOXL1:1.65776601795;TEAD1:1.65285563854;MAFB:1.61140198655;XBP1:1.55990425847;NFIX:1.51432436033;UFEwm:1.47545087888;NFE2L1:1.45788852056;NKX2-2,8:1.41236785758;HOX{A4,D4}:1.40707148031;HBP1_HMGB_SSRP1_UBTF:1.39538347951;EBF1:1.38473850142;ATF6:1.32778524434;ZNF238:1.32327873248;SMAD1..7,9:1.2814499772;ZNF423:1.21837101284;EVI1:1.19195367569;SPZ1:1.17030678207;NR3C1:1.14377041617;NKX2-1,4:1.13920681536;AIRE:1.1145731877;TP53:1.06923641413;KLF4:1.05711352243;GCM1,2:1.02618371192;TFAP4:1.01584127823;PAX1,9:0.998451362979;NFATC1..3:0.977454987614;RXR{A,B,G}:0.963093053231;EN1,2:0.95836469823;TLX1..3_NFIC{dimer}:0.955573135353;HLF:0.909493591821;SRF:0.885980536019;DBP:0.879365046344;FOXO1,3,4:0.873549621849;ADNP_IRX_SIX_ZHX:0.863464555166;MTE{core}:0.862888249812;NHLH1,2:0.862041501247;GTF2I:0.851771654146;HMX1:0.801272249323;ALX4:0.792436265223;TFAP2B:0.76899676467;MAZ:0.768414323789;bHLH_family:0.739519080071;NANOG{mouse}:0.731243637116;GTF2A1,2:0.705681676156;ZNF148:0.694872504698;HOX{A6,A7,B6,B7}:0.682433989454;SREBF1,2:0.681634122643;CDC5L:0.646291550568;HIC1:0.622020363895;NR6A1:0.618892258715;LHX3,4:0.612535778847;HSF1,2:0.6110090737;PAX5:0.596375702656;TBX4,5:0.582948009155;HAND1,2:0.578705767549;TFAP2{A,C}:0.553251433812;GATA4:0.528533183121;MYFfamily:0.511384192495;NFE2L2:0.505923834702;PATZ1:0.470594701559;SOX17:0.470367380897;FOXA2:0.458325883441;ZNF384:0.421225212834;TFCP2:0.418244710848;MZF1:0.415869472443;T:0.344773795863;POU6F1:0.344386923899;STAT1,3:0.341307014891;NKX3-2:0.325396139184;ARID5B:0.324927668611;MTF1:0.313066190885;STAT2,4,6:0.311717658735;ESRRA:0.285292428346;MEF2{A,B,C,D}:0.269273580108;CEBPA,B_DDIT3:0.26627022975;FOX{D1,D2}:0.250474465988;PRDM1:0.244028913319;EP300:0.209759054215;PAX4:0.181263860247;AHR_ARNT_ARNT2:0.166007471519;XCPE1{core}:0.160544267991;STAT5{A,B}:0.156164967358;GFI1B:0.104103547155;TBP:0.0890242999507;ELK1,4_GABP{A,B1}:0.0399337661452;ZIC1..3:0.00235698496911;PAX6:-0.00336821911351;IRF1,2:-0.00792271643188;HNF1A:-0.013465836671;TGIF1:-0.0171606306756;REST:-0.0238030660977;ZNF143:-0.0250329990931;FOX{I1,J2}:-0.0533420818048;ZBTB6:-0.0626887989114;BACH2:-0.0696171905422;SOX5:-0.0959221055676;NFIL3:-0.129083900964;FOXM1:-0.132801152472;EGR1..3:-0.152597548836;NRF1:-0.160779479561;RREB1:-0.175897069146;AR:-0.185346305176;MED-1{core}:-0.207920646438;TLX2:-0.208676707015;PAX2:-0.223641094252;MYB:-0.226579244523;ZFP161:-0.242041803707;FOXP3:-0.258515570228;HNF4A_NR2F1,2:-0.259941035043;RFX1:-0.265147561444;ZBTB16:-0.273826036863;TOPORS:-0.286572099171;YY1:-0.287676521682;JUN:-0.299512086864;HOXA9_MEIS1:-0.309656366469;FOSL2:-0.329020999;FOXN1:-0.331652803437;FOS_FOS{B,L1}_JUN{B,D}:-0.338589333724;VSX1,2:-0.349872207077;ATF2:-0.352690007033;POU3F1..4:-0.355223577113;SP1:-0.373735390563;CRX:-0.374672737281;SOX2:-0.391891053393;NKX6-1,2:-0.391966547851;FOXD3:-0.399571152274;ATF5_CREB3:-0.409022093825;PAX3,7:-0.415415263771;ETS1,2:-0.426202254798;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.429136206625;CREB1:-0.435515354943;NFE2:-0.436730798055;RUNX1..3:-0.439415593905;ATF4:-0.476614439217;DMAP1_NCOR{1,2}_SMARC:-0.512608577097;SPI1:-0.532494021793;LEF1_TCF7_TCF7L1,2:-0.54435085334;PPARG:-0.55003879704;PRRX1,2:-0.578831408042;LMO2:-0.585654974329;ELF1,2,4:-0.593506504176;TFDP1:-0.597933526311;IRF7:-0.60870098128;BPTF:-0.6335351223;GATA6:-0.67665528772;FOXQ1:-0.676835096684;NFKB1_REL_RELA:-0.682881995784;IKZF2:-0.688191496516;CUX2:-0.694944286535;SPIB:-0.699440361928;ONECUT1,2:-0.704806358509;POU5F1:-0.710553794836;ZEB1:-0.737750535641;SNAI1..3:-0.7580819445;PAX8:-0.782916299359;CDX1,2,4:-0.821428601941;NR1H4:-0.823928580915;POU1F1:-0.839370493444;GFI1:-0.842652876878;FOXP1:-0.865007674655;BREu{core}:-0.886547894826;FOX{F1,F2,J1}:-0.902471509591;RORA:-0.904645211913;OCT4_SOX2{dimer}:-0.906742130807;RBPJ:-1.00385752131;NKX2-3_NKX2-5:-1.06798517797;RFX2..5_RFXANK_RFXAP:-1.07213150495;MYOD1:-1.07282990604;NR5A1,2:-1.08270538873;E2F1..5:-1.12108213233;SOX{8,9,10}:-1.17569188729;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18570025342;NANOG:-1.19041547029;PITX1..3:-1.19627298493;NFY{A,B,C}:-1.28402260705;PDX1:-1.48223155471;PBX1:-1.50952453097;ALX1:-1.81351213982;POU2F1..3:-2.38422253686
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11468-119C1;search_select_hide=table117:FF:11468-119C1
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Preadipocyte - omental, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11065
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueomentum
dev stage58 years old adult
sexfemale
age58
cell typepreadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004851
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11065 CAGE DRX008409 DRR009281
Accession ID Hg19

Library idBAMCTSS
CNhs11065 DRZ000706 DRZ002091
Accession ID Hg38

Library idBAMCTSS
CNhs11065 DRZ012056 DRZ013441
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10051downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004851
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.CCGTCC sRNA-Seq DRX037081 DRR041447
Accession ID Hg19

Library idBAMCTSS
SRhi10006.CCGTCC DRZ007089


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0935
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.407
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.662
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0551
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0642
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0524
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.333
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0799
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0705
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.18
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.18
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.404
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.996
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0524
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.197
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.484
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.53
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.18
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0991
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.248
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.636
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.004
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.596
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.028
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0524
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.805
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11065

Jaspar motifP-value
MA0002.20.241
MA0003.10.531
MA0004.10.232
MA0006.10.211
MA0007.10.806
MA0009.10.138
MA0014.10.155
MA0017.10.247
MA0018.21.44911e-4
MA0019.10.841
MA0024.11.52337e-7
MA0025.10.0262
MA0027.10.387
MA0028.10.0818
MA0029.10.522
MA0030.10.812
MA0031.10.971
MA0035.20.0842
MA0038.10.00299
MA0039.20.0059
MA0040.10.239
MA0041.10.578
MA0042.10.704
MA0043.10.00608
MA0046.10.312
MA0047.20.971
MA0048.10.992
MA0050.10.00522
MA0051.10.392
MA0052.10.391
MA0055.10.372
MA0057.10.688
MA0058.10.169
MA0059.10.399
MA0060.18.34837e-13
MA0061.15.88221e-5
MA0062.24.84771e-6
MA0065.20.126
MA0066.10.645
MA0067.10.0448
MA0068.10.674
MA0069.10.0826
MA0070.10.523
MA0071.10.951
MA0072.10.398
MA0073.10.958
MA0074.10.891
MA0076.10.0174
MA0077.10.382
MA0078.10.849
MA0079.20.54
MA0080.21.50554e-6
MA0081.10.00555
MA0083.10.206
MA0084.10.475
MA0087.10.451
MA0088.10.299
MA0090.18.79672e-8
MA0091.10.0552
MA0092.10.0443
MA0093.10.277
MA0099.23.99293e-4
MA0100.10.541
MA0101.13.0021e-7
MA0102.20.351
MA0103.15.07916e-4
MA0104.20.00305
MA0105.13.76727e-4
MA0106.10.258
MA0107.11.85714e-6
MA0108.20.383
MA0111.10.377
MA0112.20.0956
MA0113.10.161
MA0114.10.183
MA0115.10.00964
MA0116.10.729
MA0117.10.401
MA0119.10.807
MA0122.10.561
MA0124.10.129
MA0125.10.367
MA0131.10.373
MA0135.10.224
MA0136.12.23597e-9
MA0137.20.949
MA0138.20.65
MA0139.10.427
MA0140.10.796
MA0141.10.542
MA0142.10.00849
MA0143.10.845
MA0144.10.671
MA0145.10.265
MA0146.10.524
MA0147.10.0108
MA0148.10.739
MA0149.10.561
MA0150.10.117
MA0152.10.00641
MA0153.10.494
MA0154.10.636
MA0155.10.362
MA0156.11.7388e-6
MA0157.10.744
MA0159.10.306
MA0160.10.0248
MA0162.10.0831
MA0163.10.647
MA0164.10.531
MA0258.10.868
MA0259.10.309



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11065

Novel motifP-value
10.459
100.723
1000.606
1010.411
1020.0331
1030.655
1040.943
1050.134
1060.579
1070.486
1080.391
1090.632
110.353
1100.649
1110.752
1120.879
1130.0124
1140.152
1150.122
1160.222
1170.395
1180.146
1190.212
120.428
1200.689
1210.704
1220.299
1230.00137
1240.341
1250.123
1260.299
1270.124
1280.807
1290.975
130.247
1300.702
1310.114
1320.862
1330.265
1340.53
1350.686
1360.727
1370.897
1380.258
1390.411
140.209
1400.39
1410.784
1420.454
1430.844
1440.715
1450.115
1460.317
1470.135
1480.666
1498.6522e-5
150.899
1500.606
1510.874
1520.0206
1530.0679
1540.683
1550.00568
1560.306
1570.839
1580.0073
1590.379
160.013
1600.467
1610.261
1620.983
1630.0442
1640.61
1650.919
1660.0657
1670.379
1680.432
1690.0908
170.866
180.158
190.0258
20.342
200.351
210.32
220.225
230.268
240.0535
250.284
260.397
270.668
280.217
290.487
30.854
300.378
310.762
328.40543e-16
330.927
340.939
350.726
360.0276
370.461
380.17
390.22
40.559
400.191
410.694
420.205
430.963
440.692
450.948
460.721
470.405
480.492
490.483
50.394
500.846
510.459
520.712
530.0765
540.89
550.224
560.402
570.674
580.279
590.373
60.444
600.983
610.346
620.504
630.989
640.213
650.827
660.239
670.546
680.899
690.423
70.201
700.464
710.978
720.948
730.0262
740.283
750.746
760.438
770.134
780.1
790.0235
80.815
800.511
810.675
820.395
830.996
840.275
850.0912
860.37
870.194
880.605
890.342
90.547
900.871
910.494
920.135
930.76
940.929
950.835
960.823
970.264
980.179
990.152



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11065


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002579 (omentum preadipocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003688 (omentum)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0000042 (serous membrane)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002417 (abdominal segment of trunk)
0002358 (peritoneum)
0000916 (abdomen)
0003684 (abdominal cavity)
0001178 (visceral peritoneum)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000140 (human omentum preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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