FFCP PHASE1:Hg19::chr14:22337014..22337031,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12108 | |HGNC=12108 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390436_5end | |association_with_transcript=0bp_to_ENST00000390436_5end | ||
|cluster_id=chr14:22337014..22337031,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_1_at_TRAV13-1_5end | |description=CAGE_peak_1_at_TRAV13-1_5end | ||
|id=chr14:22337014..22337031,+ | |id=chr14:22337014..22337031,+ | ||
|ontology_enrichment_celltype=CL:0000791;1.74e-54;18!CL:0000789;1.74e-54;18!CL:0002419;1.74e-54;18!CL:0000625;4.65e-38;11!CL:0000084;5.30e-38;25!CL:0000624;2.11e-21;6!CL:0000898;4.59e-12;3!CL:0000542;1.84e-11;53!CL:0000226;1.35e-10;3!CL:0000842;1.35e-10;3!CL:0000623;1.63e-10;3!CL:0000815;1.01e-08;2!CL:0000792;1.01e-08;2!CL:0002677;1.01e-08;2 | |ontology_enrichment_celltype=CL:0000791!4.87e-35!18;CL:0000789!4.87e-35!18;CL:0002420!4.87e-35!18;CL:0002419!4.87e-35!18;CL:0000790!4.87e-35!18;CL:0000084!1.36e-26!25;CL:0000827!1.36e-26!25;CL:0000625!8.63e-25!11;CL:0000838!2.38e-14!52;CL:0000624!3.24e-14!6;CL:0000542!5.74e-14!53;CL:0000051!5.74e-14!53;CL:0002087!2.50e-11!119;CL:0000738!1.05e-10!140;CL:0000898!2.90e-08!3;CL:0002031!4.31e-08!124;CL:0000842!2.37e-07!3;CL:0000623!2.59e-07!3;CL:0000825!2.59e-07!3;CL:0000037!4.06e-07!172;CL:0000566!4.06e-07!172 | ||
| | |ontology_enrichment_celltype_v019=CL:0000791;1.74e-54;18!CL:0000789;1.74e-54;18!CL:0002419;1.74e-54;18!CL:0000625;4.65e-38;11!CL:0000084;5.30e-38;25!CL:0000624;2.11e-21;6!CL:0000898;4.59e-12;3!CL:0000542;1.84e-11;53!CL:0000226;1.35e-10;3!CL:0000842;1.35e-10;3!CL:0000623;1.63e-10;3!CL:0000815;1.01e-08;2!CL:0000792;1.01e-08;2!CL:0002677;1.01e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.90e-54,18;CL:0000789,1.90e-54,18;CL:0002420,1.90e-54,18;CL:0002419,1.90e-54,18;CL:0000790,1.90e-54,18;CL:0000625,5.00e-38,11;CL:0000084,5.63e-38,25;CL:0000827,5.63e-38,25;CL:0000838,1.49e-22,52;CL:0000542,4.96e-22,53;CL:0000051,4.96e-22,53;CL:0000624,2.15e-21,6;CL:0000898,4.59e-12,3;CL:0002087,1.54e-11,115;CL:0000226,1.22e-10,3;CL:0000842,1.22e-10,3;CL:0000623,1.40e-10,3;CL:0000825,1.40e-10,3;CL:0000738,6.70e-10,136;CL:0000815,1.03e-08,2;CL:0000792,1.03e-08,2;CL:0002677,1.03e-08,2;CL:0002031,7.63e-08,120;CL:0000037,5.77e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;1.74e-54;18!CL:0000051;1.84e-11;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000178;1.08e-20;15!UBERON:0000179;1.08e-20;15!UBERON:0000463;1.08e-20;15!UBERON:0002390;1.77e-14;32!UBERON:0002193;9.88e-11;42!UBERON:0002370;6.31e-09;2!UBERON:0005058;6.31e-09;2!UBERON:0009113;6.31e-09;2!UBERON:0004177;3.09e-07;5!UBERON:0005057;3.09e-07;5 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.73e-16!15;UBERON:0000179!5.73e-16!15;UBERON:0000463!5.73e-16!15;UBERON:0004177!2.18e-08!7;UBERON:0007023!1.25e-07!115;UBERON:0002193!5.90e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.08e-20;15!UBERON:0000179;1.08e-20;15!UBERON:0000463;1.08e-20;15!UBERON:0002390;1.77e-14;32!UBERON:0002193;9.88e-11;42!UBERON:0002370;6.31e-09;2!UBERON:0005058;6.31e-09;2!UBERON:0009113;6.31e-09;2!UBERON:0004177;3.09e-07;5!UBERON:0005057;3.09e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.04e-20,15;UBERON:0000179,1.04e-20,15;UBERON:0000463,1.04e-20,15;UBERON:0002370,2.58e-09,4;UBERON:0005058,2.58e-09,4;UBERON:0009113,2.58e-09,4;UBERON:0003295,2.58e-09,4;UBERON:0005562,2.58e-09,4;UBERON:0004177,1.23e-08,7;UBERON:0005057,1.23e-08,7 | |||
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| ||
|short_description=p1@TRAV13-1 | |short_description=p1@TRAV13-1 | ||
}} | }} |
Latest revision as of 03:56, 19 September 2015
Short description: | p1@TRAV13-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAV13-1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000390436_5end |
EntrezGene: | NA |
HGNC: | 12108 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.90e-54 | 18 |
alpha-beta T cell | 1.90e-54 | 18 |
immature T cell | 1.90e-54 | 18 |
mature T cell | 1.90e-54 | 18 |
immature alpha-beta T cell | 1.90e-54 | 18 |
CD8-positive, alpha-beta T cell | 5.00e-38 | 11 |
T cell | 5.63e-38 | 25 |
pro-T cell | 5.63e-38 | 25 |
lymphoid lineage restricted progenitor cell | 1.49e-22 | 52 |
lymphocyte | 4.96e-22 | 53 |
common lymphoid progenitor | 4.96e-22 | 53 |
CD4-positive, alpha-beta T cell | 2.15e-21 | 6 |
naive T cell | 4.59e-12 | 3 |
nongranular leukocyte | 1.54e-11 | 115 |
single nucleate cell | 1.22e-10 | 3 |
mononuclear cell | 1.22e-10 | 3 |
natural killer cell | 1.40e-10 | 3 |
pro-NK cell | 1.40e-10 | 3 |
leukocyte | 6.70e-10 | 136 |
regulatory T cell | 1.03e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.03e-08 | 2 |
naive regulatory T cell | 1.03e-08 | 2 |
hematopoietic lineage restricted progenitor cell | 7.63e-08 | 120 |
hematopoietic stem cell | 5.77e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
blood | 1.04e-20 | 15 |
haemolymphatic fluid | 1.04e-20 | 15 |
organism substance | 1.04e-20 | 15 |
thymus | 2.58e-09 | 4 |
hemolymphoid system gland | 2.58e-09 | 4 |
thymic region | 2.58e-09 | 4 |
pharyngeal gland | 2.58e-09 | 4 |
thymus primordium | 2.58e-09 | 4 |
hemopoietic organ | 1.23e-08 | 7 |
immune organ | 1.23e-08 | 7 |