FFCP PHASE1:Hg19::chr11:6423982..6423997,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=322 | |EntrezGene=322 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=581 | |HGNC=581 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000524626,uc001mcz.1_5end | |association_with_transcript=16bp_to_ENST00000524626,uc001mcz.1_5end | ||
|cluster_id=chr11:6423982..6423997,- | |||
|coexpression_cluster_id=C726 | |coexpression_cluster_id=C726 | ||
|description=CAGE_peak_9_at_APBB1_5end | |description=CAGE_peak_9_at_APBB1_5end | ||
|id=chr11:6423982..6423997,- | |id=chr11:6423982..6423997,- | ||
|ontology_enrichment_celltype=CL:0000084!3.10e-38!25;CL:0000827!3.10e-38!25;CL:0000542!1.20e-36!53;CL:0000051!1.20e-36!53;CL:0000838!4.56e-35!52;CL:0000791!7.64e-32!18;CL:0000789!7.64e-32!18;CL:0002420!7.64e-32!18;CL:0002419!7.64e-32!18;CL:0000790!7.64e-32!18;CL:0002087!6.87e-20!119;CL:0000738!1.18e-18!140;CL:0000625!1.04e-16!11;CL:0000988!5.18e-16!182;CL:0000037!9.68e-16!172;CL:0000566!9.68e-16!172;CL:0000624!8.41e-15!6;CL:0002031!4.44e-14!124;CL:0002032!4.49e-12!165;CL:0000837!4.49e-12!165;CL:0000080!1.90e-09!6;CL:0000898!2.06e-08!3;CL:0000842!7.38e-08!3;CL:0000623!1.40e-07!3;CL:0000825!1.40e-07!3 | |ontology_enrichment_celltype=CL:0000084!3.10e-38!25;CL:0000827!3.10e-38!25;CL:0000542!1.20e-36!53;CL:0000051!1.20e-36!53;CL:0000838!4.56e-35!52;CL:0000791!7.64e-32!18;CL:0000789!7.64e-32!18;CL:0002420!7.64e-32!18;CL:0002419!7.64e-32!18;CL:0000790!7.64e-32!18;CL:0002087!6.87e-20!119;CL:0000738!1.18e-18!140;CL:0000625!1.04e-16!11;CL:0000988!5.18e-16!182;CL:0000037!9.68e-16!172;CL:0000566!9.68e-16!172;CL:0000624!8.41e-15!6;CL:0002031!4.44e-14!124;CL:0002032!4.49e-12!165;CL:0000837!4.49e-12!165;CL:0000080!1.90e-09!6;CL:0000898!2.06e-08!3;CL:0000842!7.38e-08!3;CL:0000623!1.40e-07!3;CL:0000825!1.40e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000084;8.89e-41;25!CL:0000791;1.12e-39;18!CL:0000789;1.12e-39;18!CL:0002419;1.12e-39;18!CL:0000624;2.64e-20;6!CL:0000625;1.20e-16;11!CL:0000815;1.59e-16;2!CL:0000792;1.59e-16;2!CL:0002677;1.59e-16;2!CL:0000542;2.33e-13;53!CL:0000898;2.53e-11;3!CL:0002127;4.69e-09;1!CL:0000911;4.69e-09;1!CL:0000814;4.69e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,4.32e-41,25;CL:0000827,4.32e-41,25;CL:0000791,6.89e-40,18;CL:0000789,6.89e-40,18;CL:0002420,6.89e-40,18;CL:0002419,6.89e-40,18;CL:0000790,6.89e-40,18;CL:0000838,6.70e-22,52;CL:0000542,1.92e-21,53;CL:0000051,1.92e-21,53;CL:0000624,3.57e-20,6;CL:0000625,7.22e-17,11;CL:0000815,1.87e-16,2;CL:0000792,1.87e-16,2;CL:0002677,1.87e-16,2;CL:0000898,2.81e-11,3;CL:0002087,5.39e-10,115;CL:0000738,1.91e-09,136;CL:0002127,3.87e-09,1;CL:0000914,3.87e-09,1;CL:0000911,3.87e-09,1;CL:0000814,3.87e-09,1;CL:0002042,3.87e-09,1;CL:0002039,3.87e-09,1;CL:0002040,3.87e-09,1;CL:0002041,3.87e-09,1;CL:0002031,4.65e-08,120;CL:0000037,3.96e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;1.12e-39;18!CL:0000051;2.33e-13;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!8.15e-12!7;UBERON:0000178!4.60e-11!15;UBERON:0000179!4.60e-11!15;UBERON:0000463!4.60e-11!15;UBERON:0002370!1.09e-10!4;UBERON:0005058!1.09e-10!4;UBERON:0009113!1.09e-10!4;UBERON:0003295!1.09e-10!4;UBERON:0005562!1.09e-10!4;UBERON:0003351!4.52e-07!6 | |ontology_enrichment_uberon=UBERON:0004177!8.15e-12!7;UBERON:0000178!4.60e-11!15;UBERON:0000179!4.60e-11!15;UBERON:0000463!4.60e-11!15;UBERON:0002370!1.09e-10!4;UBERON:0005058!1.09e-10!4;UBERON:0009113!1.09e-10!4;UBERON:0003295!1.09e-10!4;UBERON:0005562!1.09e-10!4;UBERON:0003351!4.52e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.99e-16;2!UBERON:0005058;3.99e-16;2!UBERON:0009113;3.99e-16;2!UBERON:0004177;5.73e-07;5!UBERON:0005057;5.73e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.35e-18,4;UBERON:0005058,8.35e-18,4;UBERON:0009113,8.35e-18,4;UBERON:0003295,8.35e-18,4;UBERON:0005562,8.35e-18,4;UBERON:0003351,4.71e-12,6;UBERON:0004177,2.10e-10,7;UBERON:0005057,2.10e-10,7;UBERON:0000974,2.03e-07,10;UBERON:0003408,2.03e-07,10;UBERON:0001042,2.03e-07,10;UBERON:0009145,2.03e-07,10;UBERON:0006562,8.79e-07,11;UBERON:0009722,8.79e-07,11;UBERON:0007690,8.79e-07,11 | |||
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| ||
|short_description=p9@APBB1 | |short_description=p9@APBB1 | ||
}} | }} |
Latest revision as of 03:27, 19 September 2015
Short description: | p9@APBB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_APBB1_5end |
Coexpression cluster: | C726_chronic_CD4_Hodgkin_CD8_thymus_CD19_blood |
Association with transcript: | 16bp_to_ENST00000524626, uc001mcz.1_5end |
EntrezGene: | APBB1 |
HGNC: | 581 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 4.32e-41 | 25 |
pro-T cell | 4.32e-41 | 25 |
mature alpha-beta T cell | 6.89e-40 | 18 |
alpha-beta T cell | 6.89e-40 | 18 |
immature T cell | 6.89e-40 | 18 |
mature T cell | 6.89e-40 | 18 |
immature alpha-beta T cell | 6.89e-40 | 18 |
lymphoid lineage restricted progenitor cell | 6.70e-22 | 52 |
lymphocyte | 1.92e-21 | 53 |
common lymphoid progenitor | 1.92e-21 | 53 |
CD4-positive, alpha-beta T cell | 3.57e-20 | 6 |
CD8-positive, alpha-beta T cell | 7.22e-17 | 11 |
regulatory T cell | 1.87e-16 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.87e-16 | 2 |
naive regulatory T cell | 1.87e-16 | 2 |
naive T cell | 2.81e-11 | 3 |
nongranular leukocyte | 5.39e-10 | 115 |
leukocyte | 1.91e-09 | 136 |
innate effector T cell | 3.87e-09 | 1 |
immature NK T cell | 3.87e-09 | 1 |
effector T cell | 3.87e-09 | 1 |
mature NK T cell | 3.87e-09 | 1 |
immature NK T cell stage IV | 3.87e-09 | 1 |
immature NK T cell stage I | 3.87e-09 | 1 |
immature NK T cell stage II | 3.87e-09 | 1 |
immature NK T cell stage III | 3.87e-09 | 1 |
hematopoietic lineage restricted progenitor cell | 4.65e-08 | 120 |
hematopoietic stem cell | 3.96e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
thymus | 8.35e-18 | 4 |
hemolymphoid system gland | 8.35e-18 | 4 |
thymic region | 8.35e-18 | 4 |
pharyngeal gland | 8.35e-18 | 4 |
thymus primordium | 8.35e-18 | 4 |
pharyngeal epithelium | 4.71e-12 | 6 |
hemopoietic organ | 2.10e-10 | 7 |
immune organ | 2.10e-10 | 7 |
neck | 2.03e-07 | 10 |
gland of gut | 2.03e-07 | 10 |
chordate pharynx | 2.03e-07 | 10 |
pharyngeal region of foregut | 2.03e-07 | 10 |
pharynx | 8.79e-07 | 11 |
entire pharyngeal arch endoderm | 8.79e-07 | 11 |
early pharyngeal endoderm | 8.79e-07 | 11 |