FFCP PHASE1:Hg19::chr3:99547474..99547482,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:99547474..99547482,+ | |||
|coexpression_cluster_id=C437 | |coexpression_cluster_id=C437 | ||
|description=CAGE_peak_at_chr3:99547474..99547482,+ | |description=CAGE_peak_at_chr3:99547474..99547482,+ | ||
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|ontology_enrichment_celltype=CL:0000542!6.08e-08!53;CL:0000051!6.08e-08!53;CL:0000838!1.42e-07!52 | |ontology_enrichment_celltype=CL:0000542!6.08e-08!53;CL:0000051!6.08e-08!53;CL:0000838!1.42e-07!52 | ||
|ontology_enrichment_celltype_v019=CL:0000624;9.61e-24;6!CL:0000791;3.94e-19;18!CL:0000789;3.94e-19;18!CL:0002419;3.94e-19;18!CL:0000623;9.41e-18;3!CL:0000084;2.02e-13;25!CL:0000815;4.94e-12;2!CL:0000792;4.94e-12;2!CL:0002677;4.94e-12;2!CL:0000542;1.02e-11;53!CL:0000898;2.64e-08;3!CL:0000226;3.23e-08;3!CL:0000842;3.23e-08;3 | |ontology_enrichment_celltype_v019=CL:0000624;9.61e-24;6!CL:0000791;3.94e-19;18!CL:0000789;3.94e-19;18!CL:0002419;3.94e-19;18!CL:0000623;9.41e-18;3!CL:0000084;2.02e-13;25!CL:0000815;4.94e-12;2!CL:0000792;4.94e-12;2!CL:0002677;4.94e-12;2!CL:0000542;1.02e-11;53!CL:0000898;2.64e-08;3!CL:0000226;3.23e-08;3!CL:0000842;3.23e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000624,7.64e-24,6;CL:0000838,3.08e-21,52;CL:0000542,8.94e-21,53;CL:0000051,8.94e-21,53;CL:0000791,3.76e-19,18;CL:0000789,3.76e-19,18;CL:0002420,3.76e-19,18;CL:0002419,3.76e-19,18;CL:0000790,3.76e-19,18;CL:0000623,7.75e-18,3;CL:0000825,7.75e-18,3;CL:0002087,7.33e-15,115;CL:0000084,1.96e-13,25;CL:0000827,1.96e-13,25;CL:0000738,2.18e-13,136;CL:0002031,1.59e-12,120;CL:0000037,2.02e-12,168;CL:0000815,3.96e-12,2;CL:0000792,3.96e-12,2;CL:0002677,3.96e-12,2;CL:0000988,1.53e-11,177;CL:0002032,1.46e-10,161;CL:0000837,1.46e-10,161;CL:0000898,2.28e-08,3;CL:0000226,2.55e-08,3;CL:0000842,2.55e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.94e-19;18!CL:0000051;1.02e-11;53 | |ontology_enrichment_development_v019=CL:0000790;3.94e-19;18!CL:0000051;1.02e-11;53 | ||
|ontology_enrichment_disease=DOID:162!8.17e-11!235;DOID:14566!8.94e-10!239 | |ontology_enrichment_disease=DOID:162!8.17e-11!235;DOID:14566!8.94e-10!239 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005418,9.79e-07,1;UBERON:0001389,9.79e-07,1;UBERON:0000026,9.79e-07,1;UBERON:0008784,9.79e-07,1;UBERON:0006058,9.79e-07,1;UBERON:0003663,9.79e-07,1;UBERON:0004256,9.79e-07,1;UBERON:0004708,9.79e-07,1;UBERON:0002101,9.79e-07,1;UBERON:0004709,9.79e-07,1;UBERON:0002529,9.79e-07,1;UBERON:0010538,9.79e-07,1;UBERON:0003661,9.79e-07,1;UBERON:0010890,9.79e-07,1;UBERON:0002471,9.79e-07,1;UBERON:0001383,9.79e-07,1;UBERON:0004357,9.79e-07,1;UBERON:0004347,9.79e-07,1;UBERON:0005420,9.79e-07,1;UBERON:0005732,9.79e-07,1;UBERON:0010758,9.79e-07,1;UBERON:0010707,9.79e-07,1;UBERON:0000978,9.79e-07,1;UBERON:0002103,9.79e-07,1;UBERON:0001665,9.79e-07,1;UBERON:0003823,9.79e-07,1;UBERON:0000154,9.79e-07,1;UBERON:0010709,9.79e-07,1;UBERON:0005733,9.79e-07,1;UBERON:0005730,9.79e-07,1 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0.204000691244253,0,0,0.136874425072884,0.125542639594803,0.305653622991805,0,0.0787107813136792,0.393364276848904,0.767658796194425,0.928896739896456,0,0,0,0.619737604642413,0.995184627411951,0.293600439334847,1.10799081706375,0.200544447470142,3.68918480216948,0.223915474239924,0,0,0.290796477559129,0.377875943688809,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0.316462387440884,0.633765858935825,0,0.209658645508376,0.22465726229299,0,0.16072558669708,0,0,0.547992461293902,0,0.546138611262131,0,0.426730222566507,0.400395987036012,0,0,0,2.27685187643779,4.11066032559657,4.20500550937752,0,0.560508562981536,0.526768169550154,5.50787356318733,7.8602152549833,6.5792479679843,0,2.60737813306872,2.36723902867367,0,0,2.65145316727353,1.10766947291811,0,0.384273959177026,0,0.164437904603676,0,0,0.889719378972363,0.802622484269139,1.04535523804977,0,0.383220493601921,0.34362744548263,0.253019692019503,0,0.651083453856419,0,0.150575119077773,0,0,0.236777252044017,0,3.62892137804518,3.4767225451856,5.06885413589796,0,0,0,0,0,0.144846518960824,0,0.973269740605272,0.378139268656271,0.665188192387692,0.790513071238134,0.196468613246569,0,0,0,0.174129737299267,0,1.19245312152671,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,0.258416759169329,0,0,0,0,0,0,0.81014194788176,0.446498641420399,0,0.450445921933289,0,0,0,0,0,0,0,0,0.132409180813219,0,0.354668382198357,0,0,0,0.622422070799533,0.538842688278752,0,0,0,0,0,0,0.149448680551801,0.469737994575059,0.485618833104395,0.421352420106746,0.204154171254893,0.245668634623536,0.206651562351531,0,0,0,0,0.168336113954066,0.500474079487857,0,0,0,0,0,0.538168907066586,0,0,0.300091096084402,0,0,0,0.337552664482532,0.0974370051611986,0.757301322732344,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0.72995471815166,0,0,0,0.464367928031979,0,0,0,0.241011029883482,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0.462985512576611,0.190254152234598,0,0,0,0.234004265139238,0.297262324577456,0,0,0,0,0.290633938513962,0,0,0,0,0.432359860250884,0.37872730027914,0,0,0,0,0,0,0,0,0.43596006883328,0.1466765716419,0,0,0,0,0,0,0,0.799266537048298,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0.112085143993527,2.75843064282698,4.74380664690938,5.00537841491019,0,0,0,0.167516265334349,0,0,0,0.414415513436035,0,0,0,0.207970861530807,0,0.315404830067869,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0.82707210449155,3.66714141391649,1.921096040462,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0.519254429183621,0.116210378459959,0.120859449591622,0,0,0,0,0.262248829918848,0,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0.219259876645935,0,0,0,0,0.309123034943167,0.640986253728404,0.082509499920588,0,0,0,0,0.462145851343933,0.307007349452259,0.551346289938122,0.107420244868274,0.145016693914229,0.767039646744908,0.0890320356467374,0.165284915360978,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0,0.424216295861138,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0.822724546172388,0,0,0,0.320472213382419,0,0.490080431962063,0.557409525377156,0,0.640276590135727,0,0.199579371432817,0,0.423347165447766,0,0,0.456469358066384,0.156679895773023,2.50634477090067,0.846458889008016,0,0.403599414382095,0.425846237690326,0.343505344755765,0.307240764308458,0,0.333698283423817,0.390776190804081,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0.445773537109913,0.284136146806413,0,0,0,0,0.562677665642051,0.333926115068718,0.16480387422676,0.422250816255987,0.597743964753209,0.276283915531148,0.251932747854276,0,0.492339221844278,0,0.449341755736634,0.179021174675609,1.02314474045374,0.0986434056369336,2.3948309234694,1.11136990144637,0.969332746095218,0.463840490809256,0,0.7812832832557,0.0874599999961957,0,0.682760689712998,0.762760950878299,1.18193840883968,0.689486746482929,0.874813840149763,0,0,0.361789315876224,0,0.442317039724898,0,0,0.32681539055697,0.139423744278603,0.230850775511391,0.113942055847001,0.46112780877612,0.179515288819544,0.434589487688032,0.638002319463839,0,0,0,0.156980256395025,0.498635045700469,0.451191321234361,0,0,0.569261198172555,0.476809736941136,0,0,0.141353071433941,0.432777279484182,0,0.265372693510018,0.611030144933625,0.889563386041866,0.741383633679017,0.313265848516366,0.134802265961354,0.802577647298789,0,0.364909578431332,0.391329237864179,0.242780379534093,0.789168805698781,0,0.30607276163049,0.252746318513952,0.150323419414493,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0.195984794828755,0.435296032902013,0.17472666824203,0.171986032471617,0.483781656445426,0.438535902517113,0.164230914106418,0,0.617792886840502,0.22598074078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| ||
|short_description=p@chr3:99547474..99547482,+ | |short_description=p@chr3:99547474..99547482,+ | ||
}} | }} |
Latest revision as of 00:12, 30 July 2015
Short description: | p@chr3:99547474..99547482, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:99547474..99547482, + |
Coexpression cluster: | C437_CD4_CD8_Natural_CD19_thyroid_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 7.64e-24 | 6 |
lymphoid lineage restricted progenitor cell | 3.08e-21 | 52 |
lymphocyte | 8.94e-21 | 53 |
common lymphoid progenitor | 8.94e-21 | 53 |
mature alpha-beta T cell | 3.76e-19 | 18 |
alpha-beta T cell | 3.76e-19 | 18 |
immature T cell | 3.76e-19 | 18 |
mature T cell | 3.76e-19 | 18 |
immature alpha-beta T cell | 3.76e-19 | 18 |
natural killer cell | 7.75e-18 | 3 |
pro-NK cell | 7.75e-18 | 3 |
nongranular leukocyte | 7.33e-15 | 115 |
T cell | 1.96e-13 | 25 |
pro-T cell | 1.96e-13 | 25 |
leukocyte | 2.18e-13 | 136 |
hematopoietic lineage restricted progenitor cell | 1.59e-12 | 120 |
hematopoietic stem cell | 2.02e-12 | 168 |
regulatory T cell | 3.96e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.96e-12 | 2 |
naive regulatory T cell | 3.96e-12 | 2 |
hematopoietic cell | 1.53e-11 | 177 |
hematopoietic oligopotent progenitor cell | 1.46e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.46e-10 | 161 |
naive T cell | 2.28e-08 | 3 |
single nucleate cell | 2.55e-08 | 3 |
mononuclear cell | 2.55e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
hindlimb bud | 9.79e-07 | 1 |
soleus muscle | 9.79e-07 | 1 |
appendage | 9.79e-07 | 1 |
lower limb segment | 9.79e-07 | 1 |
multi-limb segment region | 9.79e-07 | 1 |
hindlimb muscle | 9.79e-07 | 1 |
hindlimb zeugopod muscle | 9.79e-07 | 1 |
paired limb/fin | 9.79e-07 | 1 |
limb | 9.79e-07 | 1 |
pelvic appendage | 9.79e-07 | 1 |
limb segment | 9.79e-07 | 1 |
paired limb/fin segment | 9.79e-07 | 1 |
limb muscle | 9.79e-07 | 1 |
pelvic complex muscle | 9.79e-07 | 1 |
zeugopod | 9.79e-07 | 1 |
muscle of leg | 9.79e-07 | 1 |
paired limb/fin bud | 9.79e-07 | 1 |
limb bud | 9.79e-07 | 1 |
pelvic appendage bud | 9.79e-07 | 1 |
limb/fin field | 9.79e-07 | 1 |
subdivision of organism along appendicular axis | 9.79e-07 | 1 |
appendage girdle complex | 9.79e-07 | 1 |
leg | 9.79e-07 | 1 |
hindlimb | 9.79e-07 | 1 |
triceps surae | 9.79e-07 | 1 |
hindlimb zeugopod | 9.79e-07 | 1 |
posterior region of body | 9.79e-07 | 1 |
pelvic complex | 9.79e-07 | 1 |
limb field | 9.79e-07 | 1 |
hindlimb/pelvic fin field | 9.79e-07 | 1 |