FFCP PHASE1:Hg19::chr12:49688923..49688936,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5630 | |EntrezGene=5630 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9461 | |HGNC=9461 | ||
|TSSclassifier=strong | |||
|UniProt=B3KWQ6,P41219 | |UniProt=B3KWQ6,P41219 | ||
|association_with_transcript=14bp_to_NM_006262,uc001rtu.2_5end | |association_with_transcript=14bp_to_NM_006262,uc001rtu.2_5end | ||
|cluster_id=chr12:49688923..49688936,+ | |||
|coexpression_cluster_id=C102 | |coexpression_cluster_id=C102 | ||
|description=CAGE_peak_1_at_PRPH_5end | |description=CAGE_peak_1_at_PRPH_5end | ||
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|ontology_enrichment_celltype=CL:0000047!1.48e-10!8;CL:0000540!4.48e-08!6;CL:0000031!4.48e-08!6;CL:0000404!4.48e-08!6;CL:0002322!9.95e-07!5 | |ontology_enrichment_celltype=CL:0000047!1.48e-10!8;CL:0000540!4.48e-08!6;CL:0000031!4.48e-08!6;CL:0000404!4.48e-08!6;CL:0002322!9.95e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002319;7.23e-09;25!CL:0000540;4.57e-07;6!CL:0000404;4.57e-07;6 | |ontology_enrichment_celltype_v019=CL:0002319;7.23e-09;25!CL:0000540;4.57e-07;6!CL:0000404;4.57e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000047,5.46e-11,8;CL:0002319,7.27e-09,25;CL:0000133,2.08e-07,59;CL:0000540,5.27e-07,6;CL:0000031,5.27e-07,6;CL:0000404,5.27e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006241;5.34e-08;3!UBERON:0003057;5.34e-08;3!CL:0000031;4.57e-07;6 | |ontology_enrichment_development_v019=UBERON:0006241;5.34e-08;3!UBERON:0003057;5.34e-08;3!CL:0000031;4.57e-07;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.07e-38!115;UBERON:0000073!7.24e-25!94;UBERON:0001016!7.24e-25!94;UBERON:0005743!1.69e-23!86;UBERON:0001017!1.79e-20!82;UBERON:0003075!2.15e-18!86;UBERON:0007284!2.15e-18!86;UBERON:0002346!8.09e-18!90;UBERON:0001049!4.55e-17!57;UBERON:0005068!4.55e-17!57;UBERON:0006241!4.55e-17!57;UBERON:0007135!4.55e-17!57;UBERON:0004121!1.12e-15!169;UBERON:0000924!1.74e-15!173;UBERON:0006601!1.74e-15!173;UBERON:0002616!2.03e-12!59;UBERON:0000955!6.04e-11!69;UBERON:0006238!6.04e-11!69;UBERON:0000922!1.81e-10!612;UBERON:0003135!2.16e-10!11;UBERON:0002780!3.22e-10!41;UBERON:0001890!3.22e-10!41;UBERON:0006240!3.22e-10!41;UBERON:0003056!5.11e-10!61;UBERON:0003080!7.96e-10!42;UBERON:0003076!1.91e-09!15;UBERON:0003057!1.91e-09!15;UBERON:0000153!3.23e-09!129;UBERON:0007811!3.23e-09!129;UBERON:0000468!8.64e-09!659;UBERON:0002020!2.38e-08!34;UBERON:0003528!2.38e-08!34;UBERON:0002298!5.01e-08!8;UBERON:0001893!6.31e-08!34;UBERON:0000033!6.45e-08!123;UBERON:0002050!1.51e-07!605;UBERON:0005423!1.51e-07!605;UBERON:0002791!1.99e-07!33;UBERON:0000473!2.95e-07!8;UBERON:0004732!3.33e-07!13;UBERON:0000923!3.68e-07!604;UBERON:0005291!3.68e-07!604;UBERON:0006598!3.68e-07!604;UBERON:0002532!3.68e-07!604 | |ontology_enrichment_uberon=UBERON:0007023!7.07e-38!115;UBERON:0000073!7.24e-25!94;UBERON:0001016!7.24e-25!94;UBERON:0005743!1.69e-23!86;UBERON:0001017!1.79e-20!82;UBERON:0003075!2.15e-18!86;UBERON:0007284!2.15e-18!86;UBERON:0002346!8.09e-18!90;UBERON:0001049!4.55e-17!57;UBERON:0005068!4.55e-17!57;UBERON:0006241!4.55e-17!57;UBERON:0007135!4.55e-17!57;UBERON:0004121!1.12e-15!169;UBERON:0000924!1.74e-15!173;UBERON:0006601!1.74e-15!173;UBERON:0002616!2.03e-12!59;UBERON:0000955!6.04e-11!69;UBERON:0006238!6.04e-11!69;UBERON:0000922!1.81e-10!612;UBERON:0003135!2.16e-10!11;UBERON:0002780!3.22e-10!41;UBERON:0001890!3.22e-10!41;UBERON:0006240!3.22e-10!41;UBERON:0003056!5.11e-10!61;UBERON:0003080!7.96e-10!42;UBERON:0003076!1.91e-09!15;UBERON:0003057!1.91e-09!15;UBERON:0000153!3.23e-09!129;UBERON:0007811!3.23e-09!129;UBERON:0000468!8.64e-09!659;UBERON:0002020!2.38e-08!34;UBERON:0003528!2.38e-08!34;UBERON:0002298!5.01e-08!8;UBERON:0001893!6.31e-08!34;UBERON:0000033!6.45e-08!123;UBERON:0002050!1.51e-07!605;UBERON:0005423!1.51e-07!605;UBERON:0002791!1.99e-07!33;UBERON:0000473!2.95e-07!8;UBERON:0004732!3.33e-07!13;UBERON:0000923!3.68e-07!604;UBERON:0005291!3.68e-07!604;UBERON:0006598!3.68e-07!604;UBERON:0002532!3.68e-07!604 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.83e-10;49!UBERON:0002298;4.98e-10;6!UBERON:0003135;2.65e-09;11!UBERON:0004732;3.35e-08;13!UBERON:0000160;4.01e-08;17!UBERON:0002240;5.34e-08;3!UBERON:0005174;5.34e-08;3!UBERON:0001137;5.34e-08;3!UBERON:0001896;5.81e-08;3!UBERON:0005290;5.81e-08;3!UBERON:0003978;1.04e-07;3!UBERON:0000946;1.04e-07;3!UBERON:0005409;1.30e-07;22!UBERON:0006947;3.51e-07;3!UBERON:0004054;3.51e-07;3!UBERON:0004733;7.69e-07;12!UBERON:0002028;7.69e-07;12 | |ontology_enrichment_uberon_v019=UBERON:0000922;1.83e-10;49!UBERON:0002298;4.98e-10;6!UBERON:0003135;2.65e-09;11!UBERON:0004732;3.35e-08;13!UBERON:0000160;4.01e-08;17!UBERON:0002240;5.34e-08;3!UBERON:0005174;5.34e-08;3!UBERON:0001137;5.34e-08;3!UBERON:0001896;5.81e-08;3!UBERON:0005290;5.81e-08;3!UBERON:0003978;1.04e-07;3!UBERON:0000946;1.04e-07;3!UBERON:0005409;1.30e-07;22!UBERON:0006947;3.51e-07;3!UBERON:0004054;3.51e-07;3!UBERON:0004733;7.69e-07;12!UBERON:0002028;7.69e-07;12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.08e-15,114;UBERON:0001016,7.89e-12,89;UBERON:0003076,9.43e-12,15;UBERON:0003057,9.43e-12,15;UBERON:0011216,1.74e-10,223;UBERON:0002298,5.04e-10,6;UBERON:0003135,2.67e-09,11;UBERON:0001017,2.71e-09,81;UBERON:0004732,3.30e-08,13;UBERON:0000160,4.05e-08,17;UBERON:0002240,4.41e-08,3;UBERON:0005174,4.41e-08,3;UBERON:0001137,4.41e-08,3;UBERON:0001896,5.75e-08,3;UBERON:0005290,5.75e-08,3;UBERON:0010096,5.75e-08,3;UBERON:0003978,1.12e-07,3;UBERON:0009751,1.12e-07,3;UBERON:0000946,1.12e-07,3;UBERON:0002523,1.12e-07,3;UBERON:0005983,1.12e-07,3;UBERON:0002165,1.12e-07,3;UBERON:0002062,1.12e-07,3;UBERON:0007280,1.12e-07,3;UBERON:0006947,3.44e-07,3;UBERON:0004054,3.44e-07,3;UBERON:0003075,3.73e-07,82;UBERON:0007284,3.73e-07,82;UBERON:0004121,5.56e-07,171;UBERON:0000924,5.56e-07,171;UBERON:0006601,5.56e-07,171;UBERON:0004733,7.74e-07,12;UBERON:0002028,7.74e-07,12;UBERON:0007277,7.74e-07,12 | |||
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| ||
|short_description=p1@PRPH | |short_description=p1@PRPH | ||
}} | }} |
Latest revision as of 16:09, 18 September 2015
Short description: | p1@PRPH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRPH_5end |
Coexpression cluster: | C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS |
Association with transcript: | 14bp_to_NM_006262, uc001rtu.2_5end |
EntrezGene: | PRPH |
HGNC: | 9461 |
UniProt: | B3KWQ6P41219 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 5.46e-11 | 8 |
neural cell | 7.27e-09 | 25 |
neurectodermal cell | 2.08e-07 | 59 |
neuron | 5.27e-07 | 6 |
neuroblast | 5.27e-07 | 6 |
electrically signaling cell | 5.27e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.08e-15 | 114 |
nervous system | 7.89e-12 | 89 |
posterior neural tube | 9.43e-12 | 15 |
chordal neural plate | 9.43e-12 | 15 |
organ system subdivision | 1.74e-10 | 223 |
brainstem | 5.04e-10 | 6 |
male reproductive organ | 2.67e-09 | 11 |
central nervous system | 2.71e-09 | 81 |
segmental subdivision of nervous system | 3.30e-08 | 13 |
intestine | 4.05e-08 | 17 |
spinal cord | 4.41e-08 | 3 |
dorsal region element | 4.41e-08 | 3 |
dorsum | 4.41e-08 | 3 |
medulla oblongata | 5.75e-08 | 3 |
myelencephalon | 5.75e-08 | 3 |
future myelencephalon | 5.75e-08 | 3 |
valve | 1.12e-07 | 3 |
cardiac mesenchyme | 1.12e-07 | 3 |
cardial valve | 1.12e-07 | 3 |
tunica intima | 1.12e-07 | 3 |
heart layer | 1.12e-07 | 3 |
endocardium | 1.12e-07 | 3 |
endocardial cushion | 1.12e-07 | 3 |
presumptive endocardium | 1.12e-07 | 3 |
male genital duct | 3.44e-07 | 3 |
internal male genitalia | 3.44e-07 | 3 |
neural plate | 3.73e-07 | 82 |
presumptive neural plate | 3.73e-07 | 82 |
ectoderm-derived structure | 5.56e-07 | 171 |
ectoderm | 5.56e-07 | 171 |
presumptive ectoderm | 5.56e-07 | 171 |
segmental subdivision of hindbrain | 7.74e-07 | 12 |
hindbrain | 7.74e-07 | 12 |
presumptive hindbrain | 7.74e-07 | 12 |