FFCP PHASE1:Hg19::chr21:47406885..47406955,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr21:47406885..47406955,+
|short_description=p2@COL6A1
|description=CAGE_peak_2_at_COL6A1_5end
|association_with_transcript=-67bp_to_ENST00000492851_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1291 | |EntrezGene=1291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |HGNC=2211 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-67bp_to_ENST00000492851_5end | |||
|cluster_id=chr21:47406885..47406955,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_2_at_COL6A1_5end | |||
|id=chr21:47406885..47406955,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.90e-44!180;CL:0000057!1.71e-23!75;CL:0000183!4.38e-20!59;CL:0000680!8.12e-20!57;CL:0000056!8.12e-20!57;CL:0000355!8.12e-20!57;CL:0000187!4.94e-19!54;CL:0000393!2.71e-18!60;CL:0000211!2.71e-18!60;CL:0000192!1.84e-14!42;CL:0000514!1.84e-14!42;CL:0000359!2.43e-11!32;CL:0002620!8.50e-09!23;CL:0000048!3.74e-07!430;CL:0000499!5.64e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000192;5.49e-12;43!CL:0000057;6.01e-12;73!CL:0000187;8.76e-12;55!CL:0002620;9.90e-12;23!CL:0000359;1.04e-10;32!CL:0000393;1.22e-10;61!CL:0000211;1.22e-10;61!CL:0000134;1.97e-09;55!CL:0002320;4.01e-09;188!CL:0000723;5.52e-09;61!CL:0000499;1.29e-08;28!CL:0002570;2.95e-08;8!CL:0002334;3.41e-08;12!CL:0000048;4.47e-08;58!CL:0000327;9.67e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.34e-29,76;CL:0000680,1.89e-22,58;CL:0000056,1.89e-22,58;CL:0000355,1.89e-22,58;CL:0000187,2.12e-21,55;CL:0000048,1.82e-19,427;CL:0000393,2.04e-18,61;CL:0000211,2.04e-18,61;CL:0000723,2.06e-18,433;CL:0000034,1.95e-17,441;CL:0000192,3.58e-16,43;CL:0000514,3.58e-16,43;CL:0000359,1.58e-11,32;CL:0002620,1.81e-11,23;CL:0002320,7.77e-09,361;CL:0000499,1.89e-08,28;CL:0002570,3.03e-08,8;CL:0002334,3.91e-08,12;CL:0000222,5.63e-07,121;CL:0000134,7.27e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000514;5.49e-12;43!CL:0000355;1.11e-11;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.32e-25!83;UBERON:0002329!4.32e-25!83;UBERON:0003077!4.32e-25!83;UBERON:0003059!4.32e-25!83;UBERON:0007282!4.32e-25!83;UBERON:0009618!4.32e-25!83;UBERON:0007285!4.32e-25!83;UBERON:0004290!6.06e-24!70;UBERON:0005256!5.39e-21!143;UBERON:0002385!9.06e-21!63;UBERON:0001015!9.06e-21!63;UBERON:0000383!9.06e-21!63;UBERON:0001134!2.26e-20!61;UBERON:0002036!2.26e-20!61;UBERON:0003082!2.26e-20!61;UBERON:0000486!2.42e-19!82;UBERON:0000475!9.67e-17!365;UBERON:0000481!5.19e-14!347;UBERON:0002100!9.27e-14!216;UBERON:0003102!1.01e-11!95;UBERON:0003104!2.18e-11!238;UBERON:0009142!2.18e-11!238;UBERON:0000468!4.83e-09!659;UBERON:0002199!1.90e-08!45;UBERON:0002416!1.90e-08!45;UBERON:0004573!7.32e-08!33;UBERON:0004571!7.32e-08!33;UBERON:0001013!9.75e-08!14;UBERON:0004872!2.63e-07!84;UBERON:0001637!3.89e-07!42;UBERON:0003509!3.89e-07!42;UBERON:0004572!3.89e-07!42;UBERON:0000490!4.23e-07!138;UBERON:0002097!5.44e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;6.53e-12;31!UBERON:0001015;6.53e-12;31!UBERON:0000383;6.53e-12;31!UBERON:0001013;3.95e-10;14!UBERON:0002384;6.83e-10;198!UBERON:0004573;1.71e-08;33!UBERON:0004571;1.71e-08;33!UBERON:0002199;8.40e-08;46!UBERON:0002416;8.40e-08;46!UBERON:0001134;9.17e-08;16!UBERON:0002036;9.17e-08;16!UBERON:0002204;1.80e-07;70!UBERON:0002097;5.67e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.12e-27,73;UBERON:0002329,1.31e-27,71;UBERON:0003059,1.31e-27,71;UBERON:0007282,1.31e-27,71;UBERON:0004290,1.31e-27,71;UBERON:0009618,1.31e-27,71;UBERON:0003077,6.71e-27,72;UBERON:0007285,6.71e-27,72;UBERON:0007503,1.40e-25,78;UBERON:0005256,4.19e-23,122;UBERON:0001134,5.76e-23,62;UBERON:0002036,5.76e-23,62;UBERON:0003082,5.76e-23,62;UBERON:0002385,9.27e-23,64;UBERON:0001015,9.27e-23,64;UBERON:0000383,9.27e-23,64;UBERON:0000486,1.30e-22,83;UBERON:0003104,1.29e-20,160;UBERON:0009142,1.29e-20,160;UBERON:0002100,4.53e-12,199;UBERON:0003102,1.61e-11,99;UBERON:0000490,3.55e-11,148;UBERON:0002199,4.33e-11,46;UBERON:0002416,4.33e-11,46;UBERON:0001013,4.02e-10,14;UBERON:0000926,6.88e-10,315;UBERON:0004120,6.88e-10,315;UBERON:0006603,6.88e-10,315;UBERON:0004573,2.21e-09,33;UBERON:0004571,2.21e-09,33;UBERON:0002097,6.03e-09,41;UBERON:0002384,1.05e-08,371;UBERON:0001637,7.80e-08,42;UBERON:0003509,7.80e-08,42;UBERON:0004572,7.80e-08,42;UBERON:0002204,4.51e-07,167 | |||
|phase1_expression=2.18014055124668,9.63452357509424,3.24195129420734,4.00293193412522,6.70441641640932,2.61701557230111,0,7.58063848112197,17.2382514611893,0,0.697801167972428,0,0,4.45558870656168,8.94772914465373,13.4465029290355,6.02694528023977,9.49403117503585,5.85519358548608,1.35433163884467,4.48801520737357,3.76145665773705,0.286235987131057,0.684372125364421,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,1.34140171940727,0.767175371061182,7.22878304769133,17.5468268722561,6.37324683427624,5.5670016293577,5.35298357332899,0.189069634328136,0.221729397462564,0.263504357079378,0.327447688744282,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,3.97577561356255,3.16576279161449,1.72131935057184,7.17091551872034,3.19201543978521,2.24271040056923,1.06748995729705,3.45334567784024,3.42332138939743,0.942974704487816,1.30769522490767,5.2975099675726,11.5235184896,2.10889288650417,3.74592092196385,1.1409436430889,9.26581819421167,4.22764195117554,2.26622122115384,2.52811452064047,2.65400422631361,4.42203542322365,4.95963749643674,19.0080457165129,13.3524141810421,6.37112953356618,12.9351265526923,1.17835279767846,1.7516592782075,1.6623846929051,1.31693286264251,7.04921930337745,7.21142682751665,0.680593098960126,4.12596162084383,9.61008249683553,5.51022943014861,8.70264178644767,4.01904864029912,4.89517026086695,3.7223371266318,4.21940830603166,3.21542117031955,2.77677151668526,4.69454483075727,10.0220555227663,6.03516307278244,2.31729825923573,1.01736355386293,0.193260853163297,0,0,0.609868530647977,0.397589304964456,0.813357600086629,1.14027160516907,0.252320850875628,0,7.8224766164908,42.4539019207304,1.38134921352481,2.78620756819187,7.21879481669586,0,0.337169380156203,0,0.110293972732394,0,0,0.134831308160164,0,0,0,1.40241773803446,7.8199062152966,13.2307840246988,1.26755034821831,0,1.77236972004421,0,0.245976877086227,0,0.109750285408626,0,0,0.0925884451585296,0.977424915930974,5.19967392639789,0,0.231860809950154,0.469634776943287,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0.383382679165211,0,0,0,0.144119953416961,0.12624243342638,0,0,0,1.71072446022705,1.33675740514321,0,0,2.35475277125258,0.43596006883328,1.0267360014933,1.16344544182,50.0719024192635,14.370146793452,1.32969058292435,4.16029747645464,1.02882949704857,0,2.66422179016099,3.57444984145369,8.13932408087165,1.64648067356154,5.5375151329935,5.68627117988073,0,0,0,0.099972991182057,0,0,0,3.11512312139057,8.04033550838797,2.85273810081437,4.1986578933598,1.43833425785268,1.79060963239896,0,0,0.215627574859517,0,0.254094624222463,0,0.773288812777695,0,0.637938751653163,0,0,0,4.66227668532732,6.00204625271613,7.86668568729233,6.23912584592421,4.10386674233472,0.788512075169673,2.34282829985426,2.70851489754947,9.09630016223939,1.03473071292505,1.99267679560631,4.05612170791747,5.29990048255305,6.46143819627044,13.7257369524342,0,0,0,0,0,0.30239029332968,1.48864684691266,1.68808170616869,7.01650236082684,2.81906128362542,1.02341449813341,3.05622450172854,7.42090332224955,8.01890407773809,14.9151849263027,4.27061211271807,8.82732529612156,11.504827467536,0,0.40101294060657,0,3.21480454860899,10.5612877443896,11.2766996865105,0.451199612907412,0.231046011313244,0,0,0,1.13733384070897,0.510281115829547,0,1.54227252690289,0.270946437543853,1.50506932156456,0,0,0.671624264166535,0,0,0,0,0,0.824328093181778,0.824125183365091,0.165018999841176,0.574265537996172,0.650060246036521,6.42735719376638,6.86362099874066,5.23765298189791,6.29365066377131,2.06754858726796,4.0819693049944,5.65565106265491,3.66474497889234,6.05417842397814,0,0,0,0,0.464845549297286,10.0739950985805,0.6970372701606,3.69640296211307,1.59691809095107,6.08953094452551,5.00375391580584,1.71749864090389,1.86079184679834,1.58189712359363,4.38449446024797,1.02359116524534,4.70732886837312,5.72765846266686,7.06453776179307,1.61885211824983,4.66712950551293,3.29874726567922,1.2130948894399,4.75530963519025,2.94880919367287,1.46290121726877,5.84912375115083,8.45201174054043,3.68549760801562,9.89838023675989,5.65040583101214,1.65409603063837,4.64407282668854,7.0152141640602,2.89387767133344,4.59126326432643,0.608731130888112,3.40805847909725,1.69017361519345,0.430234056612155,1.27723753317057,0.35667105148125,2.12856638442359,6.75544432952525,5.26871828735843,1.89736586882858,4.54915136318478,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0.490080431962063,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,2.19762268907841,0,0.334330152832435,0,1.90995587790152,0,0,0,0.281338832821026,0.111308705022906,0,0.422250816255987,2.39097585901284,0.552567831062295,0,0,0,4.354554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| ||
|short_description=p2@COL6A1 | |||
}} | }} |
Latest revision as of 22:02, 18 September 2015
Short description: | p2@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -67bp_to_ENST00000492851_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.34e-29 | 76 |
muscle precursor cell | 1.89e-22 | 58 |
myoblast | 1.89e-22 | 58 |
multi-potent skeletal muscle stem cell | 1.89e-22 | 58 |
muscle cell | 2.12e-21 | 55 |
multi fate stem cell | 1.82e-19 | 427 |
electrically responsive cell | 2.04e-18 | 61 |
electrically active cell | 2.04e-18 | 61 |
somatic stem cell | 2.06e-18 | 433 |
stem cell | 1.95e-17 | 441 |
smooth muscle cell | 3.58e-16 | 43 |
smooth muscle myoblast | 3.58e-16 | 43 |
vascular associated smooth muscle cell | 1.58e-11 | 32 |
skin fibroblast | 1.81e-11 | 23 |
connective tissue cell | 7.77e-09 | 361 |
stromal cell | 1.89e-08 | 28 |
mesenchymal stem cell of adipose | 3.03e-08 | 8 |
preadipocyte | 3.91e-08 | 12 |
mesodermal cell | 5.63e-07 | 121 |
mesenchymal cell | 7.27e-07 | 354 |