FFCP PHASE1:Hg19::chr1:13840157..13840176,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126755 | |EntrezGene=126755 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27005 | |HGNC=27005 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VT99 | |UniProt=Q5VT99 | ||
|association_with_transcript=65bp_to_NM_001010847,uc001avb.2_5end | |association_with_transcript=65bp_to_NM_001010847,uc001avb.2_5end | ||
|cluster_id=chr1:13840157..13840176,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_3_at_LRRC38_5end | |description=CAGE_peak_3_at_LRRC38_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004874;3.70e-08;1 | |ontology_enrichment_development_v019=UBERON:0004874;3.70e-08;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3571;1.22e-08;1!DOID:3112;2.59e-08;1 | |ontology_enrichment_disease_v019=DOID:3571;1.22e-08;1!DOID:3112;2.59e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3571,1.22e-08,1;DOID:3112,2.89e-08,1 | |||
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|short_description=p3@LRRC38 | |short_description=p3@LRRC38 | ||
}} | }} |
Latest revision as of 15:36, 16 September 2015
Short description: | p3@LRRC38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRRC38_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 65bp_to_NM_001010847, uc001avb.2_5end |
EntrezGene: | LRRC38 |
HGNC: | 27005 |
UniProt: | Q5VT99 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.22e-08 | 1 |
papillary adenocarcinoma | 2.89e-08 | 1 |