FFCP PHASE1:Hg19::chr22:40322599..40322618,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr22:40322599..40322618,+
|short_description=p5@GRAP2
|description=CAGE_peak_5_at_GRAP2_5end
|association_with_transcript=0bp_to_ENST00000478445,ENST0000054475...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9402 | |EntrezGene=9402 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4563 | |HGNC=4563 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z8E3 | |UniProt=B7Z8E3 | ||
|association_with_transcript=0bp_to_ENST00000478445,ENST00000544756,uc010gya.1,uc011aoo.1,uc011aop.1,uc011aoq.1_5end | |||
|cluster_id=chr22:40322599..40322618,+ | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_5_at_GRAP2_5end | |||
|id=chr22:40322599..40322618,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.47e-24!18;CL:0000789!1.47e-24!18;CL:0002420!1.47e-24!18;CL:0002419!1.47e-24!18;CL:0000790!1.47e-24!18;CL:0000084!2.33e-24!25;CL:0000827!2.33e-24!25;CL:0000625!1.25e-20!11;CL:0000838!4.56e-12!52;CL:0000542!1.01e-11!53;CL:0000051!1.01e-11!53;CL:0000738!2.80e-08!140;CL:0000624!1.20e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.35e-35;25!CL:0000791;1.46e-33;18!CL:0000789;1.46e-33;18!CL:0002419;1.46e-33;18!CL:0000625;1.07e-29;11!CL:0000898;3.52e-10;3!CL:0000624;1.20e-08;6!CL:0000542;2.13e-08;53!CL:0000815;2.05e-07;2!CL:0000792;2.05e-07;2!CL:0002677;2.05e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.35e-35,25;CL:0000827,1.35e-35,25;CL:0000791,1.42e-33,18;CL:0000789,1.42e-33,18;CL:0002420,1.42e-33,18;CL:0002419,1.42e-33,18;CL:0000790,1.42e-33,18;CL:0000625,7.68e-30,11;CL:0000838,7.49e-15,52;CL:0000542,1.71e-14,53;CL:0000051,1.71e-14,53;CL:0000898,3.42e-10,3;CL:0000624,1.46e-08,6;CL:0000815,2.15e-07,2;CL:0000792,2.15e-07,2;CL:0002677,2.15e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.46e-33;18!CL:0000051;2.13e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!7.30e-16!15;UBERON:0000179!7.30e-16!15;UBERON:0000463!7.30e-16!15;UBERON:0007023!4.89e-10!115;UBERON:0004177!7.15e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.87e-24;15!UBERON:0000179;6.87e-24;15!UBERON:0000463;6.87e-24;15!UBERON:0002390;2.27e-15;32!UBERON:0002193;1.64e-09;42!UBERON:0002370;1.22e-08;2!UBERON:0005058;1.22e-08;2!UBERON:0009113;1.22e-08;2!UBERON:0001829;3.51e-07;2!UBERON:0004177;5.80e-07;5!UBERON:0005057;5.80e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.80e-24,15;UBERON:0000179,9.80e-24,15;UBERON:0000463,9.80e-24,15;UBERON:0002370,1.20e-08,4;UBERON:0005058,1.20e-08,4;UBERON:0009113,1.20e-08,4;UBERON:0003295,1.20e-08,4;UBERON:0005562,1.20e-08,4;UBERON:0003408,3.32e-08,10;UBERON:0004177,4.78e-08,7;UBERON:0005057,4.78e-08,7;UBERON:0001829,4.70e-07,2 | |||
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| ||
|short_description=p5@GRAP2 | |||
}} | }} |
Latest revision as of 19:24, 24 September 2015
Short description: | p5@GRAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GRAP2_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000478445, ENST00000544756, uc010gya.1, uc011aoo.1, uc011aop.1, uc011aoq.1_5end |
EntrezGene: | GRAP2 |
HGNC: | 4563 |
UniProt: | B7Z8E3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.35e-35 | 25 |
pro-T cell | 1.35e-35 | 25 |
mature alpha-beta T cell | 1.42e-33 | 18 |
alpha-beta T cell | 1.42e-33 | 18 |
immature T cell | 1.42e-33 | 18 |
mature T cell | 1.42e-33 | 18 |
immature alpha-beta T cell | 1.42e-33 | 18 |
CD8-positive, alpha-beta T cell | 7.68e-30 | 11 |
lymphoid lineage restricted progenitor cell | 7.49e-15 | 52 |
lymphocyte | 1.71e-14 | 53 |
common lymphoid progenitor | 1.71e-14 | 53 |
naive T cell | 3.42e-10 | 3 |
CD4-positive, alpha-beta T cell | 1.46e-08 | 6 |
regulatory T cell | 2.15e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.15e-07 | 2 |
naive regulatory T cell | 2.15e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 9.80e-24 | 15 |
haemolymphatic fluid | 9.80e-24 | 15 |
organism substance | 9.80e-24 | 15 |
thymus | 1.20e-08 | 4 |
hemolymphoid system gland | 1.20e-08 | 4 |
thymic region | 1.20e-08 | 4 |
pharyngeal gland | 1.20e-08 | 4 |
thymus primordium | 1.20e-08 | 4 |
gland of gut | 3.32e-08 | 10 |
hemopoietic organ | 4.78e-08 | 7 |
immune organ | 4.78e-08 | 7 |
major salivary gland | 4.70e-07 | 2 |