FFCP PHASE1:Hg19::chr11:118230287..118230361,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9354 | |EntrezGene=9354 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12499 | |HGNC=12499 | ||
|TSSclassifier=strong | |||
|UniProt=Q14139 | |UniProt=Q14139 | ||
|association_with_transcript=0bp_to_ENST00000252108,ENST00000431736,NM_001204077,NM_004788,uc001psv.2,uc001psw.2_5end | |association_with_transcript=0bp_to_ENST00000252108,ENST00000431736,NM_001204077,NM_004788,uc001psv.2,uc001psw.2_5end | ||
|cluster_id=chr11:118230287..118230361,+ | |||
|description=CAGE_peak_1_at_UBE4A_5end | |description=CAGE_peak_1_at_UBE4A_5end | ||
|id=chr11:118230287..118230361,+ | |id=chr11:118230287..118230361,+ | ||
|ontology_enrichment_celltype=CL:0000738!5.35e-10!140;CL:0000037!1.04e-07!172;CL:0000566!1.04e-07!172;CL:0002032!2.12e-07!165;CL:0000837!2.12e-07!165;CL:0002087!2.13e-07!119;CL:0002031!2.95e-07!124 | |ontology_enrichment_celltype=CL:0000738!5.35e-10!140;CL:0000037!1.04e-07!172;CL:0000566!1.04e-07!172;CL:0002032!2.12e-07!165;CL:0000837!2.12e-07!165;CL:0002087!2.13e-07!119;CL:0002031!2.95e-07!124 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.99e-11,136;CL:0000037,2.33e-08,168;CL:0002087,3.47e-08,115;CL:0002032,4.77e-08,161;CL:0000837,4.77e-08,161;CL:0002031,5.15e-08,120;CL:0000988,1.76e-07,177 | |||
|ontology_enrichment_development_v019=UBERON:0006601;7.09e-07;82 | |ontology_enrichment_development_v019=UBERON:0006601;7.09e-07;82 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.15e-24!115;UBERON:0001049!3.11e-19!57;UBERON:0005068!3.11e-19!57;UBERON:0006241!3.11e-19!57;UBERON:0007135!3.11e-19!57;UBERON:0002780!1.26e-17!41;UBERON:0001890!1.26e-17!41;UBERON:0006240!1.26e-17!41;UBERON:0003080!1.15e-16!42;UBERON:0002616!2.62e-16!59;UBERON:0001017!4.36e-16!82;UBERON:0005743!1.00e-15!86;UBERON:0000955!6.76e-15!69;UBERON:0006238!6.76e-15!69;UBERON:0000073!1.18e-14!94;UBERON:0001016!1.18e-14!94;UBERON:0001893!5.71e-14!34;UBERON:0002020!1.46e-13!34;UBERON:0003528!1.46e-13!34;UBERON:0002791!2.22e-13!33;UBERON:0001869!6.94e-13!32;UBERON:0002619!1.99e-11!22;UBERON:0001950!1.34e-10!20;UBERON:0002346!1.66e-10!90;UBERON:0003075!4.41e-10!86;UBERON:0007284!4.41e-10!86;UBERON:0000956!1.59e-09!25;UBERON:0000203!1.59e-09!25;UBERON:0003056!2.35e-08!61 | |ontology_enrichment_uberon=UBERON:0007023!3.15e-24!115;UBERON:0001049!3.11e-19!57;UBERON:0005068!3.11e-19!57;UBERON:0006241!3.11e-19!57;UBERON:0007135!3.11e-19!57;UBERON:0002780!1.26e-17!41;UBERON:0001890!1.26e-17!41;UBERON:0006240!1.26e-17!41;UBERON:0003080!1.15e-16!42;UBERON:0002616!2.62e-16!59;UBERON:0001017!4.36e-16!82;UBERON:0005743!1.00e-15!86;UBERON:0000955!6.76e-15!69;UBERON:0006238!6.76e-15!69;UBERON:0000073!1.18e-14!94;UBERON:0001016!1.18e-14!94;UBERON:0001893!5.71e-14!34;UBERON:0002020!1.46e-13!34;UBERON:0003528!1.46e-13!34;UBERON:0002791!2.22e-13!33;UBERON:0001869!6.94e-13!32;UBERON:0002619!1.99e-11!22;UBERON:0001950!1.34e-10!20;UBERON:0002346!1.66e-10!90;UBERON:0003075!4.41e-10!86;UBERON:0007284!4.41e-10!86;UBERON:0000956!1.59e-09!25;UBERON:0000203!1.59e-09!25;UBERON:0003056!2.35e-08!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.73e-12;41!UBERON:0001890;1.73e-12;41!UBERON:0001893;5.60e-12;34!UBERON:0003528;1.09e-11;34!UBERON:0002020;1.09e-11;34!UBERON:0000073;1.25e-11;53!UBERON:0002616;1.25e-11;53!UBERON:0001869;1.70e-11;32!UBERON:0002619;1.94e-11;22!UBERON:0002791;2.04e-11;32!UBERON:0001950;1.33e-10;20!UBERON:0000956;1.56e-09;25!UBERON:0000203;1.56e-09;25!UBERON:0001017;6.06e-08;75!UBERON:0000955;1.80e-07;68!UBERON:0007023;2.55e-07;114!UBERON:0001016;6.60e-07;83 | |ontology_enrichment_uberon_v019=UBERON:0002780;1.73e-12;41!UBERON:0001890;1.73e-12;41!UBERON:0001893;5.60e-12;34!UBERON:0003528;1.09e-11;34!UBERON:0002020;1.09e-11;34!UBERON:0000073;1.25e-11;53!UBERON:0002616;1.25e-11;53!UBERON:0001869;1.70e-11;32!UBERON:0002619;1.94e-11;22!UBERON:0002791;2.04e-11;32!UBERON:0001950;1.33e-10;20!UBERON:0000956;1.56e-09;25!UBERON:0000203;1.56e-09;25!UBERON:0001017;6.06e-08;75!UBERON:0000955;1.80e-07;68!UBERON:0007023;2.55e-07;114!UBERON:0001016;6.60e-07;83 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.56e-24,114;UBERON:0001049,4.22e-20,56;UBERON:0005068,4.22e-20,56;UBERON:0006241,4.22e-20,56;UBERON:0007135,4.22e-20,56;UBERON:0000073,4.30e-19,53;UBERON:0002616,4.30e-19,53;UBERON:0002780,1.26e-17,41;UBERON:0001890,1.26e-17,41;UBERON:0003080,1.26e-17,41;UBERON:0006240,1.26e-17,41;UBERON:0001017,1.10e-16,81;UBERON:0000955,1.58e-15,68;UBERON:0006238,1.58e-15,68;UBERON:0001016,1.82e-15,89;UBERON:0001893,5.71e-14,34;UBERON:0003528,1.46e-13,34;UBERON:0002020,1.46e-13,34;UBERON:0001869,6.94e-13,32;UBERON:0002791,8.55e-13,32;UBERON:0002619,1.99e-11,22;UBERON:0002346,3.66e-11,86;UBERON:0003075,9.66e-11,82;UBERON:0007284,9.66e-11,82;UBERON:0001950,1.34e-10,20;UBERON:0000956,1.59e-09,25;UBERON:0000203,1.59e-09,25;UBERON:0003056,4.40e-09,61;UBERON:0010371,1.38e-07,104;UBERON:0011216,9.89e-07,223 | |||
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|short_description=p1@UBE4A | |short_description=p1@UBE4A | ||
}} | }} |
Latest revision as of 00:08, 16 September 2015
Short description: | p1@UBE4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UBE4A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000252108, ENST00000431736, NM_001204077, NM_004788, uc001psv.2, uc001psw.2_5end |
EntrezGene: | UBE4A |
HGNC: | 12499 |
UniProt: | Q14139 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 6.99e-11 | 136 |
hematopoietic stem cell | 2.33e-08 | 168 |
nongranular leukocyte | 3.47e-08 | 115 |
hematopoietic oligopotent progenitor cell | 4.77e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.77e-08 | 161 |
hematopoietic lineage restricted progenitor cell | 5.15e-08 | 120 |
hematopoietic cell | 1.76e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.56e-24 | 114 |
neural tube | 4.22e-20 | 56 |
neural rod | 4.22e-20 | 56 |
future spinal cord | 4.22e-20 | 56 |
neural keel | 4.22e-20 | 56 |
regional part of nervous system | 4.30e-19 | 53 |
regional part of brain | 4.30e-19 | 53 |
regional part of forebrain | 1.26e-17 | 41 |
forebrain | 1.26e-17 | 41 |
anterior neural tube | 1.26e-17 | 41 |
future forebrain | 1.26e-17 | 41 |
central nervous system | 1.10e-16 | 81 |
brain | 1.58e-15 | 68 |
future brain | 1.58e-15 | 68 |
nervous system | 1.82e-15 | 89 |
telencephalon | 5.71e-14 | 34 |
brain grey matter | 1.46e-13 | 34 |
gray matter | 1.46e-13 | 34 |
cerebral hemisphere | 6.94e-13 | 32 |
regional part of telencephalon | 8.55e-13 | 32 |
regional part of cerebral cortex | 1.99e-11 | 22 |
neurectoderm | 3.66e-11 | 86 |
neural plate | 9.66e-11 | 82 |
presumptive neural plate | 9.66e-11 | 82 |
neocortex | 1.34e-10 | 20 |
cerebral cortex | 1.59e-09 | 25 |
pallium | 1.59e-09 | 25 |
pre-chordal neural plate | 4.40e-09 | 61 |
ecto-epithelium | 1.38e-07 | 104 |
organ system subdivision | 9.89e-07 | 223 |