FF:10836-111D8: Difference between revisions

Latest revision as of 15:08, 3 June 2020

Name:	acute myeloid leukemia (FAB M6) cell line:F-36E
Species:	Human (Homo sapiens)
Library ID:	CNhs13060
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	unknown
cell type	erythroblast
cell line	F-36E
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005980

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13060		CAGE		DRX007818		DRR008690

Accession ID Hg19

Library id		BAM		CTSS
CNhs13060		DRZ000115		DRZ001500

Accession ID Hg38

Library id		BAM		CTSS
CNhs13060		DRZ011465		DRZ012850

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.184
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.554
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0632
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.339
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0688
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.091
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.572
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0556
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0311
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.528
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13060

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.324
MA0003.1	MA0003.1	0.829
MA0004.1	MA0004.1	0.157
MA0006.1	MA0006.1	0.325
MA0007.1	MA0007.1	0.679
MA0009.1	MA0009.1	0.269
MA0014.1	MA0014.1	0.345
MA0017.1	MA0017.1	0.0242
MA0018.2	MA0018.2	4.53685e-4
MA0019.1	MA0019.1	0.375
MA0024.1	MA0024.1	4.66494e-5
MA0025.1	MA0025.1	0.209
MA0027.1	MA0027.1	0.432
MA0028.1	MA0028.1	0.0801
MA0029.1	MA0029.1	0.0581
MA0030.1	MA0030.1	0.438
MA0031.1	MA0031.1	0.903
MA0035.2	MA0035.2	2.41967e-18
MA0038.1	MA0038.1	0.388
MA0039.2	MA0039.2	0.239
MA0040.1	MA0040.1	0.402
MA0041.1	MA0041.1	0.605
MA0042.1	MA0042.1	0.949
MA0043.1	MA0043.1	0.0109
MA0046.1	MA0046.1	0.834
MA0047.2	MA0047.2	0.251
MA0048.1	MA0048.1	0.697
MA0050.1	MA0050.1	0.081
MA0051.1	MA0051.1	0.0862
MA0052.1	MA0052.1	1.40205e-4
MA0055.1	MA0055.1	0.131
MA0057.1	MA0057.1	0.374
MA0058.1	MA0058.1	0.138
MA0059.1	MA0059.1	0.0024
MA0060.1	MA0060.1	7.18234e-7
MA0061.1	MA0061.1	0.659
MA0062.2	MA0062.2	0.0584
MA0065.2	MA0065.2	8.13813e-4
MA0066.1	MA0066.1	0.367
MA0067.1	MA0067.1	0.46
MA0068.1	MA0068.1	0.00296
MA0069.1	MA0069.1	0.195
MA0070.1	MA0070.1	0.426
MA0071.1	MA0071.1	0.152
MA0072.1	MA0072.1	0.228
MA0073.1	MA0073.1	0.998
MA0074.1	MA0074.1	0.285
MA0076.1	MA0076.1	0.121
MA0077.1	MA0077.1	0.932
MA0078.1	MA0078.1	0.779
MA0079.2	MA0079.2	0.423
MA0080.2	MA0080.2	0.875
MA0081.1	MA0081.1	0.587
MA0083.1	MA0083.1	2.80973e-4
MA0084.1	MA0084.1	0.719
MA0087.1	MA0087.1	0.184
MA0088.1	MA0088.1	0.00284
MA0090.1	MA0090.1	0.0348
MA0091.1	MA0091.1	0.504
MA0092.1	MA0092.1	0.336
MA0093.1	MA0093.1	0.193
MA0099.2	MA0099.2	0.174
MA0100.1	MA0100.1	0.00434
MA0101.1	MA0101.1	0.851
MA0102.2	MA0102.2	0.138
MA0103.1	MA0103.1	0.306
MA0104.2	MA0104.2	8.56882e-4
MA0105.1	MA0105.1	8.12442e-4
MA0106.1	MA0106.1	0.493
MA0107.1	MA0107.1	0.409
MA0108.2	MA0108.2	2.55158e-8
MA0111.1	MA0111.1	0.208
MA0112.2	MA0112.2	0.144
MA0113.1	MA0113.1	0.651
MA0114.1	MA0114.1	0.00494
MA0115.1	MA0115.1	0.00584
MA0116.1	MA0116.1	7.66743e-4
MA0117.1	MA0117.1	0.654
MA0119.1	MA0119.1	0.144
MA0122.1	MA0122.1	0.513
MA0124.1	MA0124.1	0.468
MA0125.1	MA0125.1	0.734
MA0131.1	MA0131.1	0.678
MA0135.1	MA0135.1	0.0896
MA0136.1	MA0136.1	0.199
MA0137.2	MA0137.2	0.102
MA0138.2	MA0138.2	0.479
MA0139.1	MA0139.1	0.349
MA0140.1	MA0140.1	4.4466e-28
MA0141.1	MA0141.1	0.00866
MA0142.1	MA0142.1	0.0936
MA0143.1	MA0143.1	0.499
MA0144.1	MA0144.1	0.993
MA0145.1	MA0145.1	0.728
MA0146.1	MA0146.1	0.29
MA0147.1	MA0147.1	7.08098e-5
MA0148.1	MA0148.1	0.201
MA0149.1	MA0149.1	0.00364
MA0150.1	MA0150.1	0.636
MA0152.1	MA0152.1	0.809
MA0153.1	MA0153.1	0.436
MA0154.1	MA0154.1	0.0773
MA0155.1	MA0155.1	0.38
MA0156.1	MA0156.1	0.273
MA0157.1	MA0157.1	0.373
MA0159.1	MA0159.1	0.901
MA0160.1	MA0160.1	0.00299
MA0162.1	MA0162.1	0.687
MA0163.1	MA0163.1	1.10789e-6
MA0164.1	MA0164.1	0.817
MA0258.1	MA0258.1	0.149
MA0259.1	MA0259.1	0.133

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13060

Novel motif	Logo	P-value
1	1	0.00577
10	10	0.0606
100	100	0.642
101	101	0.637
102	102	0.286
103	103	0.0201
104	104	0.992
105	105	0.305
106	106	0.612
107	107	0.554
108	108	0.723
109	109	0.0537
11	11	0.0928
110	110	0.156
111	111	0.0447
112	112	0.837
113	113	0.63
114	114	0.0176
115	115	0.0189
116	116	0.344
117	117	0.0599
118	118	0.835
119	119	0.74
12	12	0.836
120	120	0.793
121	121	0.724
122	122	0.351
123	123	0.0617
124	124	0.0375
125	125	0.724
126	126	0.195
127	127	0.15
128	128	0.66
129	129	0.117
13	13	0.0753
130	130	0.171
131	131	0.972
132	132	0.163
133	133	0.0024
134	134	0.885
135	135	0.742
136	136	0.757
137	137	0.834
138	138	0.899
139	139	0.039
14	14	0.945
140	140	0.151
141	141	0.0265
142	142	0.819
143	143	0.818
144	144	0.951
145	145	0.943
146	146	0.922
147	147	0.225
148	148	0.102
149	149	0.182
15	15	0.0655
150	150	0.889
151	151	0.721
152	152	0.152
153	153	0.276
154	154	0.872
155	155	0.0778
156	156	0.575
157	157	0.601
158	158	0.0683
159	159	0.479
16	16	0.594
160	160	0.102
161	161	0.0508
162	162	0.968
163	163	0.663
164	164	0.78
165	165	0.583
166	166	0.312
167	167	0.0272
168	168	0.972
169	169	0.834
17	17	0.144
18	18	0.152
19	19	0.78
2	2	0.432
20	20	0.818
21	21	0.548
22	22	0.674
23	23	0.679
24	24	0.609
25	25	0.27
26	26	0.0575
27	27	0.989
28	28	0.539
29	29	0.0881
3	3	0.288
30	30	0.204
31	31	0.797
32	32	0.335
33	33	0.872
34	34	0.958
35	35	0.0942
36	36	0.0304
37	37	0.465
38	38	0.662
39	39	0.622
4	4	0.202
40	40	0.379
41	41	0.441
42	42	0.235
43	43	0.256
44	44	0.844
45	45	0.743
46	46	0.0623
47	47	0.0513
48	48	0.468
49	49	0.0338
5	5	0.154
50	50	0.666
51	51	0.304
52	52	0.659
53	53	0.709
54	54	0.85
55	55	0.762
56	56	0.493
57	57	0.0937
58	58	0.219
59	59	0.637
6	6	0.976
60	60	0.746
61	61	0.439
62	62	0.064
63	63	0.841
64	64	0.134
65	65	0.851
66	66	0.0202
67	67	0.844
68	68	0.352
69	69	0.328
7	7	0.101
70	70	0.66
71	71	0.091
72	72	0.934
73	73	0.575
74	74	0.0947
75	75	0.0237
76	76	0.704
77	77	0.876
78	78	0.0196
79	79	0.0973
8	8	0.0865
80	80	0.698
81	81	0.463
82	82	0.551
83	83	0.221
84	84	0.198
85	85	0.933
86	86	0.89
87	87	0.93
88	88	0.949
89	89	0.459
9	9	0.695
90	90	0.0127
91	91	0.5
92	92	0.832
93	93	0.263
94	94	0.049
95	95	0.288
96	96	0.369
97	97	0.923
98	98	0.0629
99	99	0.426

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13060

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005980
+|accession_numbers=CAGE;DRX007818;DRR008690;DRZ000115;DRZ001500;DRZ011465;DRZ012850
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:239148671..239148686,-!p1@HES6!2.44!960.08!HES6;;chr12:54694758..54694805,-!p1@NFE2!2.28!226.48!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!2.24!174.78!GFI1B;;chr6:135502501..135502546,+!p1@MYB!2.00!116.93!MYB;;chrX:48644984..48645005,+!p1@GATA1!1.98!93.55!GATA1;;chr12:54694807..54694832,-!p3@NFE2!1.97!92.32!NFE2;;chr19:12998003..12998021,-!p1@KLF1!1.91!80.01!KLF1;;chr19:13213511..13213545,-!p2@LYL1!1.74!59.08!LYL1;;chr5:134369905..134369972,-!p1@PITX1!1.63!62.77!PITX1;;chr17:40441354..40441410,+!p2@STAT5A!1.58!36.93!STAT5A;;chr20:50159198..50159299,-!p1@NFATC2!1.52!46.77!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.50!183.40!GATA2;;chr19:12203100..12203132,+!p1@ZNF788!1.48!57.85!ZNF788;;chr8:37963466..37963506,+!p3@ASH2L!1.47!35.70!ASH2L;;chr9:135854074..135854089,+!p2@GFI1B!1.47!28.31!GFI1B;;chr19:22193731..22193751,-!p1@ZNF208!1.41!24.62!ZNF208;;chr12:54785074..54785122,-!p2@ZNF385A!1.40!36.93!ZNF385A;;chr3:128212033..128212051,-!p1@GATA2!1.36!22.16!GATA2;;chr9:20382446..20382493,-!p4@MLLT3!1.34!20.92!MLLT3;;chr12:54689532..54689551,-!p4@NFE2!1.34!20.92!NFE2;;chr1:61548069..61548102,+!p3@NFIA!1.31!46.77!NFIA;;chr19:22235279..22235301,+!p1@ZNF257!1.29!34.46!ZNF257;;chr19:12146483..12146546,-!p1@ZNF433!1.27!64.01!ZNF433;;chr3:18486354..18486377,-!p2@SATB1!1.27!22.16!SATB1;;chr6:144385698..144385742,-!p2@PLAGL1!1.26!20.92!PLAGL1;;chr12:54694653..54694672,-!p2@NFE2!1.26!17.23!NFE2;;chr19:12267524..12267564,-!p1@ZNF20,p1@ZNF625!1.23!76.31!ZNF20;;chr11:31832807..31832823,-!p4@PAX6!1.20!14.77!PAX6;;chr10:94449703..94449718,+!p1@HHEX!1.19!55.39!HHEX;;chr19:11959532..11959593,+!p1@ZNF439!1.19!55.39!ZNF439;;chr19:10305581..10305646,-!p1@DNMT1!1.18!478.81!DNMT1;;chr19:12163769..12163798,-!p1@ZNF878!1.18!18.46!ZNF878;;chr19:54024251..54024305,+!p4@ZNF331!1.17!22.16!ZNF331;;chr19:12203069..12203094,+!p2@ZNF788!1.16!19.69!ZNF788;;chr17:38020392..38020477,-!p1@IKZF3!1.16!13.54!IKZF3;;chr1:47697881..47697910,-!p4@TAL1!1.16!13.54!TAL1;;chr11:47400045..47400060,-!p6@SPI1!1.16!13.54!SPI1;;chr2:25475120..25475176,-!p2@DNMT3A!1.14!17.23!DNMT3A;;chr19:11071685..11071798,+!p1@SMARCA4!1.13!352.03!SMARCA4;;chr3:69788576..69788648,+!p1@MITF!1.12!65.24!MITF;;chr5:134369879..134369898,-!p2@PITX1!1.12!12.31!PITX1;;chr11:47399996..47400014,-!p4@SPI1!1.12!12.31!SPI1;;chr19:11998584..11998649,+!p1@ZNF69!1.11!52.93!ZNF69;;chr2:185463247..185463263,+!p1@ZNF804A!1.11!20.92!ZNF804A;;chr19:11925071..11925113,+!p1@ZNF440!1.09!81.24!ZNF440;;chr20:42295713..42295738,+!p2@MYBL2!1.09!66.47!MYBL2;;chr10:94449675..94449694,+!p2@HHEX!1.09!30.77!HHEX;;chr1:61547894..61547968,+!p2@NFIA!1.08!32.00!NFIA;;chr20:31350184..31350200,+!p1@DNMT3B!1.08!23.39!DNMT3B;;chr19:54024313..54024361,+!p7@ZNF331!1.08!11.08!ZNF331;;chr12:54778471..54778528,-!p1@ZNF385A!1.08!11.08!ZNF385A;;chr7:137620684..137620711,-!p4@CREB3L2!1.08!11.08!CREB3L2;;chr10:94449649..94449664,+!p3@HHEX!1.07!16.00!HHEX;;chr6:135502408..135502459,+!p2@MYB!1.06!12.31!MYB;;chr8:145669791..145669834,-!p1@TONSL!1.05!29.54!TONSL;;chr8:128748308..128748324,+!p2@MYC!1.04!275.72!MYC;;chr5:88178983..88179012,-!p1@MEF2C!1.04!78.78!MEF2C;;chr7:50344289..50344323,+!p1@IKZF1!1.04!9.85!IKZF1;;chr19:46800289..46800327,+!p2@HIF3A!1.04!9.85!HIF3A;;chr19:12267577..12267593,-!p3@ZNF625!1.04!9.85!ZNF625;;chr11:31832658..31832681,-!p1@PAX6!1.04!9.85!PAX6;;chr12:54689552..54689574,-!p6@NFE2!1.04!9.85!NFE2;;chr19:11071652..11071682,+!p3@SMARCA4!1.03!34.46!SMARCA4;;chr3:24536253..24536328,-!p1@THRB!1.03!18.46!THRB;;chr7:27135591..27135658,-!p1@HOXA1!1.02!18.46!HOXA1;;chr19:12273866..12273935,+!p1@ZNF136!1.01!83.70!ZNF136;;chr19:11708311..11708332,+!p2@ZNF627!1.00!17.23!ZNF627;;chr12:54785054..54785072,-!p4@ZNF385A!0.98!9.85!ZNF385A;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.62!IKZF1;;chr19:13213465..13213478,-!p7@LYL1!0.98!8.62!LYL1;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!0.95!51.70!ZNF700;;chr6:20402102..20402152,+!p1@E2F3!0.95!33.23!E2F3;;chr6:7108179..7108199,+!p4@RREB1!0.94!16.00!RREB1;;chr1:61548118..61548129,+!p9@NFIA!0.94!8.62!NFIA;;chr8:60031682..60031710,-!p2@TOX!0.93!12.31!TOX;;chr1:61548225..61548299,+!p1@NFIA!0.92!99.70!NFIA;;chr7:148581327..148581347,-!p2@EZH2!0.92!25.85!EZH2;;chr7:50344251..50344288,+!p3@IKZF1!0.92!7.39!IKZF1;;chr3:128207349..128207386,-!p3@GATA2!0.92!7.39!GATA2;;chr11:31833719..31833735,-!p15@PAX6!0.92!7.39!PAX6;;chr11:47400032..47400043,-!p5@SPI1!0.92!7.39!SPI1;;chrY:2803415..2803468,+!p1@ZFY!0.92!7.39!ZFY;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.39!KDM5D;;chr16:88519669..88519726,+!p1@ZFPM1!0.91!67.70!ZFPM1;;chr8:60031619..60031676,-!p1@TOX!0.91!16.00!TOX;;chr19:23299814..23299844,+!p1@ZNF730!0.90!8.62!ZNF730;;chr12:50479109..50479146,+!p2@SMARCD1!0.89!119.39!SMARCD1;;chr19:11708259..11708309,+!p1@ZNF627!0.88!68.93!ZNF627;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.88!16.00!ZNF700;;chrX:131623982..131624011,-!p6@MBNL3!0.88!9.85!MBNL3;;chr19:57183114..57183145,-!p1@ZNF835!0.88!7.39!ZNF835;;chr20:42295745..42295765,+!p1@MYBL2!0.87!110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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10836-111D8
 |is_a=EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
+|library_id=CNhs13060
+|library_id_phase_based=2:CNhs13060
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10836
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10836
 |name=acute myeloid leukemia (FAB M6) cell line:F-36E
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13060,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=111
@@ Line 62: / Line 78: @@
 |rna_weight_ug=32
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB0776
 |sample_cell_line=F-36E
@@ Line 83: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10836-111D8;search_select_hide=table117:FF:10836-111D8
 }}

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FF:10836-111D8: Difference between revisions

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Latest revision as of 15:08, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0