FF:11911-125G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005535 | |||
|accession_numbers=CAGE;DRX008169;DRR009041;DRZ000466;DRZ001851;DRZ011816;DRZ013201 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.75!560.23!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.61!404.60!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!2.18!148.69!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!2.12!130.06!IRF8;;chr11:47400062..47400077,-!p2@SPI1!2.03!105.21!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.91!81.10!SPI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.72!51.15!ZNF385A;;chr2:145277640..145277771,-!p1@ZEB2!1.66!562.42!ZEB2;;chr19:13213662..13213686,-!p1@LYL1!1.66!65.21!LYL1;;chr11:47400032..47400043,-!p5@SPI1!1.65!43.47!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.63!463.78!MAFB;;chr12:54778471..54778528,-!p1@ZNF385A!1.62!40.73!ZNF385A;;chr11:47399996..47400014,-!p4@SPI1!1.59!38.18!SPI1;;chr1:212873084..212873137,-!p2@BATF3!1.52!31.97!BATF3;;chr19:33793430..33793447,-!p1@CEBPA!1.50!124.03!CEBPA;;chr11:47399920..47399931,-!p7@SPI1!1.50!30.69!SPI1;;chr5:176735063..176735088,-!p2@MXD3!1.49!29.59!MXD3;;chrX:106960180..106960197,-!p2@TSC22D3!1.48!107.22!TSC22D3;;chr11:47400045..47400060,-!p6@SPI1!1.48!28.86!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.44!41.46!IRF5;;chr14:75745523..75745537,+!p1@FOS!1.40!2762.06!FOS;;chr5:88178983..88179012,-!p1@MEF2C!1.39!175.54!MEF2C;;chr19:16435625..16435682,+!p1@KLF2!1.38!713.12!KLF2;;chr10:114710098..114710130,+!p2@TCF7L2!1.36!158.19!TCF7L2;;chr1:25256756..25256774,-!p1@RUNX3!1.35!39.64!RUNX3;;chr7:50343634..50343717,+!p2@IKZF1!1.35!21.37!IKZF1;;chr9:110252035..110252057,-!p1@KLF4!1.33!314.00!KLF4;;chr1:212873061..212873080,-!p4@BATF3!1.31!19.55!BATF3;;chr2:231090433..231090469,+!p1@SP140!1.28!18.08!SP140;;chr10:51572408..51572454,+!p3@NCOA4!1.27!100.83!NCOA4;;chr10:94449703..94449718,+!p1@HHEX!1.27!67.04!HHEX;;chr19:42636586..42636607,-!p1@POU2F2!1.23!44.20!POU2F2;;chrX:106960221..106960236,-!p3@TSC22D3!1.23!43.66!TSC22D3;;chr20:48807456..48807475,+!p3@CEBPB!1.23!30.50!CEBPB;;chr1:25256439..25256476,-!p3@RUNX3!1.23!16.07!RUNX3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.22!790.39!NFKBIZ;;chr10:114709999..114710031,+!p1@TCF7L2!1.22!365.15!TCF7L2;;chr9:110250697..110250738,-!p2@KLF4!1.21!18.08!KLF4;;chr21:34442439..34442455,+!p1@OLIG1!1.21!15.16!OLIG1;;chr2:145271342..145271377,-!p5@ZEB2!1.19!14.61!ZEB2;;chrX:106960249..106960260,-!p5@TSC22D3!1.18!22.47!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.88!KDM5D;;chr21:30672433..30672464,+!p6@BACH1!1.17!13.70!BACH1;;chr11:128563948..128564003,+!p1@FLI1!1.16!162.02!FLI1;;chr2:28618532..28618610,+!p4@FOSL2!1.16!23.20!FOSL2;;chr2:68592394..68592405,+!p2@PLEK!1.16!13.33!PLEK;;chr19:45971246..45971265,+!p1@FOSB!1.14!238.56!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.14!43.47!BACH1;;chr10:3827371..3827386,-!p2@KLF6!1.12!103.21!KLF6;;chr2:208394817..208394834,+!p3@CREB1!1.10!46.40!CREB1;;chr8:71316428..71316459,-!p2@NCOA2!1.10!19.55!NCOA2;;chr10:35416142..35416169,+!p3@CREM!1.09!30.14!CREM;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.59!ELF1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.06!57.90!LRRFIP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.04!268.15!TSC22D3;;chr7:77428066..77428132,+!p2@PHTF2!1.04!65.03!PHTF2;;chr12:54694758..54694805,-!p1@NFE2!1.04!12.24!NFE2;;chr5:131826457..131826514,-!p1@IRF1!1.03!388.16!IRF1;;chr2:231090471..231090504,+!p2@SP140!1.03!9.68!SP140;;chr19:12902289..12902307,+!p1@JUNB!1.01!2173.52!JUNB;;chr18:51751066..51751077,-!p6@MBD2!1.01!14.07!MBD2;;chr4:185395633..185395651,-!p2@IRF2!1.00!14.61!IRF2;;chr12:72056800..72056834,+!p1@THAP2!0.98!11.51!THAP2;;chr2:61108695..61108753,+!p1@REL!0.97!59.00!REL;;chr10:94449675..94449694,+!p2@HHEX!0.97!22.83!HHEX;;chr9:110251836..110251887,-!p4@KLF4!0.97!11.14!KLF4;;chr2:208031943..208031978,-!p5@KLF7!0.96!10.96!KLF7;;chr20:56195474..56195506,-!p1@ZBP1!0.96!8.04!ZBP1;;chr14:45722360..45722415,-!p1@MIS18BP1!0.95!128.05!MIS18BP1;;chr9:137217986..137218049,+!p3@RXRA!0.95!23.56!RXRA;;chr20:48807430..48807439,+!p8@CEBPB!0.95!12.24!CEBPB;;chr17:38497662..38497713,+!p4@RARA!0.95!9.32!RARA;;chr2:238600998..238601013,+!p5@LRRFIP1!0.95!7.85!LRRFIP1;;chr19:45579725..45579743,-!p1@ZNF296!0.94!35.62!ZNF296;;chr4:185395590..185395627,-!p3@IRF2!0.94!9.68!IRF2;;chr7:50344251..50344288,+!p3@IKZF1!0.93!7.49!IKZF1;;chr21:34442540..34442560,+!p2@OLIG1!0.93!7.49!OLIG1;;chr2:231084659..231084721,-!p1@SP110!0.92!176.64!SP110;;chr21:30671235..30671253,+!p1@BACH1!0.92!96.81!BACH1;;chr5:88179017..88179046,-!p2@MEF2C!0.92!30.50!MEF2C;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.31!LYL1;;chr1:158978768..158978800,+!p8@IFI16!0.92!7.31!IFI16;;chr20:48807351..48807384,+!p1@CEBPB!0.91!756.23!CEBPB;;chr4:38665810..38665827,+!p1@KLF3!0.91!108.14!KLF3;;chr2:157189180..157189290,-!p1@NR4A2!0.90!37.45!NR4A2;;chr10:114710060..114710069,+!p5@TCF7L2!0.90!12.06!TCF7L2;;chr5:142782823..142782854,-!p3@NR3C1!0.90!10.23!NR3C1;;chr4:185395191..185395226,-!p4@IRF2!0.90!9.86!IRF2;;chr12:72056773..72056796,+!p3@THAP2!0.90!9.13!THAP2;;chr13:41593392..41593403,-!p7@ELF1!0.90!6.94!ELF1;;chr7:115670804..115670825,-!p1@TFEC!0.90!6.94!TFEC;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.00!MXD1;;chr17:38498402..38498445,+!p3@RARA!0.89!25.39!RARA;;chr18:77155922..77155939,+!p1@NFATC1!0.89!19.36!NFATC1;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.50!NR4A1;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.02!KLF3;;chr4:106068026..106068084,+!p1@TET2!0.88!62.29!TET2;;chr6:144385698..144385742,-!p2@PLAGL1!0.88!8.04!PLAGL1;;chr10:114886551..114886601,+!p11@TCF7L2!0.88!6.58!TCF7L2;;chr2:157198916..157198978,-!p2@NR4A2!0.87!23.56!NR4A2;;chr8:37553292..37553317,+!p1@ZNF703!0.86!158.37!ZNF703;;chrX:129244840..129244881,-!p2@ELF4!0.85!24.48!ELF4;;chr1:158979872..158979898,+!p3@IFI16!0.85!19.55!IFI16;;chr17:38498594..38498661,+!p2@RARA!0.84!21.19!RARA;;chr14:64971288..64971316,-!p2@ZBTB25!0.84!19.36!ZBTB25;;chr9:110252074..110252079,-!p3@KLF4!0.84!10.05!KLF4;;chr10:114710083..114710092,+!p8@TCF7L2!0.84!8.04!TCF7L2;;chr2:61108808..61108821,+!p3@REL!0.84!7.67!REL;;chr10:135044190..135044229,+!p3@UTF1!0.84!5.85!UTF1;;chr2:208031542..208031595,-!p2@KLF7!0.83!43.47!KLF7;;chr16:31885093..31885165,+!p1@ZNF267!0.82!92.79!ZNF267;;chr2:185463247..185463263,+!p1@ZNF804A!0.82!10.23!ZNF804A;;chr19:16435735..16435773,+!p4@KLF2!0.82!5.66!KLF2;;chrX:70712265..70712303,+!p4@TAF1!0.82!5.66!TAF1;;chr9:117150254..117150271,-!p1@AKNA!0.81!15.71!AKNA;;chr1:935398..935465,-!p2@HES4!0.81!11.87!HES4;;chr22:21771656..21771662,+!p1@HIC2!0.81!5.48!HIC2;;chr2:8822176..8822196,+!p1@ID2!0.80!820.89!ID2;;chr18:51750948..51751059,-!p1@MBD2!0.80!184.49!MBD2;;chr20:56195525..56195556,-!p2@ZBP1!0.80!5.30!ZBP1;;chr11:615942..615957,-!p1@IRF7!0.79!53.16!IRF7;;chr10:104154246..104154347,+!p3@NFKB2!0.79!34.71!NFKB2;;chr20:48807648..48807671,+!p9@CEBPB!0.79!7.67!CEBPB;;chr19:45972701..45972774,+!p2@FOSB!0.79!7.31!FOSB;;chr10:31288398..31288455,-!p2@ZNF438!0.78!6.03!ZNF438;;chrX:101186981..101187030,-!p1@ZMAT1!0.77!17.35!ZMAT1;;chr19:42627037..42627084,-!p3@POU2F2!0.77!4.93!POU2F2;;chr6:170862932..170862947,+!p5@TBP!0.77!4.93!TBP;;chr6:44355499..44355514,+!p3@CDC5L!0.76!5.30!CDC5L;;chr8:48650697..48650708,-!p2@CEBPD!0.75!38.54!CEBPD;;chr2:61108650..61108687,+!p2@REL!0.75!25.02!REL;;chr10:43932296..43932360,+!p1@ZNF487P!0.75!10.41!ZNF487P;;chr10:114710218..114710229,+!p4@TCF7L2!0.75!9.86!TCF7L2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.03!FOS;;chr15:90544182..90544195,+!p7@ZNF710!0.75!4.57!ZNF710;;chr11:2292226..2292270,-!p1@ASCL2!0.75!4.57!ASCL2;;chr6:130339710..130339745,+!p1@L3MBTL3!0.74!39.82!L3MBTL3;;chr9:88969339..88969422,-!p2@ZCCHC6!0.74!38.72!ZCCHC6;;chr2:145277882..145277967,-!p3@ZEB2!0.74!8.22!ZEB2;;chr1:44679370..44679422,+!p3@DMAP1!0.74!6.21!DMAP1;;chr6:44233252..44233296,-!p1@NFKBIE!0.73!48.04!NFKBIE;;chr8:71316021..71316068,-!p1@NCOA2!0.73!45.48!NCOA2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!35.07!STAT5A;;chrX:129244454..129244488,-!p1@ELF4!0.73!34.89!ELF4;;chr1:935467..935484,-!p1@HES4!0.73!21.55!HES4;;chr21:30671189..30671207,+!p4@BACH1!0.73!16.99!BACH1;;chr19:4067174..4067200,-!p9@ZBTB7A!0.73!5.48!ZBTB7A;;chr13:41593405..41593416,-!p9@ELF1!0.73!4.38!ELF1;;chrY:2803415..2803468,+!p1@ZFY!0.73!4.38!ZFY;;chr2:10183651..10183713,+!p1@KLF11!0.72!34.52!KLF11;;chr12:72056749..72056767,+!p6@THAP2!0.72!4.75!THAP2;;chr6:108880956..108881011,+!p1@FOXO3!0.71!30.87!FOXO3;;chr10:51572339..51572376,+!p4@NCOA4!0.71!10.23!NCOA4;;chr9:88969303..88969335,-!p1@ZCCHC6!0.70!42.74!ZCCHC6;;chr5:172483347..172483407,+!p1@C5orf41!0.70!33.98!CREBRF;;chr6:28092375..28092412,+!p1@ZSCAN16!0.70!18.63!ZSCAN16;;chr6:41040923..41040952,+!p2@NFYA!0.70!11.69!NFYA;;chr20:48807875..48807982,+!p2@CEBPB!0.69!98.46!CEBPB;;chr19:49140609..49140643,-!p1@DBP!0.69!25.02!DBP;;chr1:40367530..40367597,-!p1@MYCL1!0.69!7.67!MYCL1;;chr2:48541789..48541874,+!p1@FOXN2!0.68!99.00!FOXN2;;chr5:176738887..176738934,-!p1@MXD3!0.68!29.04!MXD3;;chr9:117160738..117160782,-!p2@AKNA!0.68!17.72!AKNA;;chr2:60780607..60780624,-!p2@BCL11A!0.68!12.97!BCL11A;;chr2:145274981..145274994,-!p9@ZEB2!0.68!5.85!ZEB2;;chr14:75988771..75988826,+!p1@BATF!0.68!5.30!BATF;;chr19:13213704..13213726,-!p3@LYL1!0.67!5.11!LYL1;;chr19:10416315..10416333,-!p1@ZGLP1!0.67!3.65!ZGLP1;;chr19:13213691..13213696,-!p9@LYL1!0.67!3.65!LYL1;;chr6:391743..391759,+!p1@IRF4!0.67!3.65!IRF4;;chr14:24630465..24630531,+!p1@IRF9!0.66!160.01!IRF9;;chr3:39195075..39195088,-!p1@CSRNP1!0.66!25.94!CSRNP1;;chr2:60780753..60780800,-!p1@BCL11A!0.66!19.91!BCL11A;;chr4:106067811..106067854,+!p2@TET2!0.66!19.00!TET2;;chr16:3313791..3313834,+!p2@ZNF263!0.66!8.77!ZNF263;;chr3:101546827..101546847,+!p2@NFKBIZ!0.66!5.30!NFKBIZ;;chr2:176033066..176033087,-!p2@ATF2!0.66!4.75!ATF2;;chr3:187463248..187463264,-!p1@BCL6!0.65!87.86!BCL6;;chr9:3525727..3525828,-!p2@RFX3!0.65!9.86!RFX3;;chr1:158979851..158979865,+!p5@IFI16!0.65!8.40!IFI16;;chr18:51750414..51750449,-!p5@MBD2!0.65!7.31!MBD2;;chr20:48807615..48807644,+!p6@CEBPB!0.65!6.21!CEBPB;;chr1:161014760..161014788,-!p4@USF1!0.65!3.47!USF1;;chr2:145275982..145276003,-!p7@ZEB2!0.65!3.47!ZEB2;;chr2:145277632..145277638,-!p17@ZEB2!0.65!3.47!ZEB2;;chr12:54694807..54694832,-!p3@NFE2!0.65!3.47!NFE2;;chr10:3827389..3827408,-!p1@KLF6!0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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.75!560.23!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.61!404.60!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!2.18!148.69!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!2.12!130.06!IRF8;;chr11:47400062..47400077,-!p2@SPI1!2.03!105.21!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.91!81.10!SPI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.72!51.15!ZNF385A;;chr2:145277640..145277771,-!p1@ZEB2!1.66!562.42!ZEB2;;chr19:13213662..13213686,-!p1@LYL1!1.66!65.21!LYL1;;chr11:47400032..47400043,-!p5@SPI1!1.65!43.47!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.63!463.78!MAFB;;chr12:54778471..54778528,-!p1@ZNF385A!1.62!40.73!ZNF385A;;chr11:47399996..47400014,-!p4@SPI1!1.59!38.18!SPI1;;chr1:212873084..212873137,-!p2@BATF3!1.52!31.97!BATF3;;chr19:33793430..33793447,-!p1@CEBPA!1.50!124.03!CEBPA;;chr11:47399920..47399931,-!p7@SPI1!1.50!30.69!SPI1;;chr5:176735063..176735088,-!p2@MXD3!1.49!29.59!MXD3;;chrX:106960180..106960197,-!p2@TSC22D3!1.48!107.22!TSC22D3;;chr11:47400045..47400060,-!p6@SPI1!1.48!28.86!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.44!41.46!IRF5;;chr14:75745523..75745537,+!p1@FOS!1.40!2762.06!FOS;;chr5:88178983..88179012,-!p1@MEF2C!1.39!175.54!MEF2C;;chr19:16435625..16435682,+!p1@KLF2!1.38!713.12!KLF2;;chr10:114710098..114710130,+!p2@TCF7L2!1.36!158.19!TCF7L2;;chr1:25256756..25256774,-!p1@RUNX3!1.35!39.64!RUNX3;;chr7:50343634..50343717,+!p2@IKZF1!1.35!21.37!IKZF1;;chr9:110252035..110252057,-!p1@KLF4!1.33!314.00!KLF4;;chr1:212873061..212873080,-!p4@BATF3!1.31!19.55!BATF3;;chr2:231090433..231090469,+!p1@SP140!1.28!18.08!SP140;;chr10:51572408..51572454,+!p3@NCOA4!1.27!100.83!NCOA4;;chr10:94449703..94449718,+!p1@HHEX!1.27!67.04!HHEX;;chr19:42636586..42636607,-!p1@POU2F2!1.23!44.20!POU2F2;;chrX:106960221..106960236,-!p3@TSC22D3!1.23!43.66!TSC22D3;;chr20:48807456..48807475,+!p3@CEBPB!1.23!30.50!CEBPB;;chr1:25256439..25256476,-!p3@RUNX3!1.23!16.07!RUNX3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.22!790.39!NFKBIZ;;chr10:114709999..114710031,+!p1@TCF7L2!1.22!365.15!TCF7L2;;chr9:110250697..110250738,-!p2@KLF4!1.21!18.08!KLF4;;chr21:34442439..34442455,+!p1@OLIG1!1.21!15.16!OLIG1;;chr2:145271342..145271377,-!p5@ZEB2!1.19!14.61!ZEB2;;chrX:106960249..106960260,-!p5@TSC22D3!1.18!22.47!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.88!KDM5D;;chr21:30672433..30672464,+!p6@BACH1!1.17!13.70!BACH1;;chr11:128563948..128564003,+!p1@FLI1!1.16!162.02!FLI1;;chr2:28618532..28618610,+!p4@FOSL2!1.16!23.20!FOSL2;;chr2:68592394..68592405,+!p2@PLEK!1.16!13.33!PLEK;;chr19:45971246..45971265,+!p1@FOSB!1.14!238.56!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.14!43.47!BACH1;;chr10:3827371..3827386,-!p2@KLF6!1.12!103.21!KLF6;;chr2:208394817..208394834,+!p3@CREB1!1.10!46.40!CREB1;;chr8:71316428..71316459,-!p2@NCOA2!1.10!19.55!NCOA2;;chr10:35416142..35416169,+!p3@CREM!1.09!30.14!CREM;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.59!ELF1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.06!57.90!LRRFIP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.04!268.15!TSC22D3;;chr7:77428066..77428132,+!p2@PHTF2!1.04!65.03!PHTF2;;chr12:54694758..54694805,-!p1@NFE2!1.04!12.24!NFE2;;chr5:131826457..131826514,-!p1@IRF1!1.03!388.16!IRF1;;chr2:231090471..231090504,+!p2@SP140!1.03!9.68!SP140;;chr19:12902289..12902307,+!p1@JUNB!1.01!2173.52!JUNB;;chr18:51751066..51751077,-!p6@MBD2!1.01!14.07!MBD2;;chr4:185395633..185395651,-!p2@IRF2!1.00!14.61!IRF2;;chr12:72056800..72056834,+!p1@THAP2!0.98!11.51!THAP2;;chr2:61108695..61108753,+!p1@REL!0.97!59.00!REL;;chr10:94449675..94449694,+!p2@HHEX!0.97!22.83!HHEX;;chr9:110251836..110251887,-!p4@KLF4!0.97!11.14!KLF4;;chr2:208031943..208031978,-!p5@KLF7!0.96!10.96!KLF7;;chr20:56195474..56195506,-!p1@ZBP1!0.96!8.04!ZBP1;;chr14:45722360..45722415,-!p1@MIS18BP1!0.95!128.05!MIS18BP1;;chr9:137217986..137218049,+!p3@RXRA!0.95!23.56!RXRA;;chr20:48807430..48807439,+!p8@CEBPB!0.95!12.24!CEBPB;;chr17:38497662..38497713,+!p4@RARA!0.95!9.32!RARA;;chr2:238600998..238601013,+!p5@LRRFIP1!0.95!7.85!LRRFIP1;;chr19:45579725..45579743,-!p1@ZNF296!0.94!35.62!ZNF296;;chr4:185395590..185395627,-!p3@IRF2!0.94!9.68!IRF2;;chr7:50344251..50344288,+!p3@IKZF1!0.93!7.49!IKZF1;;chr21:34442540..34442560,+!p2@OLIG1!0.93!7.49!OLIG1;;chr2:231084659..231084721,-!p1@SP110!0.92!176.64!SP110;;chr21:30671235..30671253,+!p1@BACH1!0.92!96.81!BACH1;;chr5:88179017..88179046,-!p2@MEF2C!0.92!30.50!MEF2C;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.31!LYL1;;chr1:158978768..158978800,+!p8@IFI16!0.92!7.31!IFI16;;chr20:48807351..48807384,+!p1@CEBPB!0.91!756.23!CEBPB;;chr4:38665810..38665827,+!p1@KLF3!0.91!108.14!KLF3;;chr2:157189180..157189290,-!p1@NR4A2!0.90!37.45!NR4A2;;chr10:114710060..114710069,+!p5@TCF7L2!0.90!12.06!TCF7L2;;chr5:142782823..142782854,-!p3@NR3C1!0.90!10.23!NR3C1;;chr4:185395191..185395226,-!p4@IRF2!0.90!9.86!IRF2;;chr12:72056773..72056796,+!p3@THAP2!0.90!9.13!THAP2;;chr13:41593392..41593403,-!p7@ELF1!0.90!6.94!ELF1;;chr7:115670804..115670825,-!p1@TFEC!0.90!6.94!TFEC;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.00!MXD1;;chr17:38498402..38498445,+!p3@RARA!0.89!25.39!RARA;;chr18:77155922..77155939,+!p1@NFATC1!0.89!19.36!NFATC1;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.50!NR4A1;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.02!KLF3;;chr4:106068026..106068084,+!p1@TET2!0.88!62.29!TET2;;chr6:144385698..144385742,-!p2@PLAGL1!0.88!8.04!PLAGL1;;chr10:114886551..114886601,+!p11@TCF7L2!0.88!6.58!TCF7L2;;chr2:157198916..157198978,-!p2@NR4A2!0.87!23.56!NR4A2;;chr8:37553292..37553317,+!p1@ZNF703!0.86!158.37!ZNF703;;chrX:129244840..129244881,-!p2@ELF4!0.85!24.48!ELF4;;chr1:158979872..158979898,+!p3@IFI16!0.85!19.55!IFI16;;chr17:38498594..38498661,+!p2@RARA!0.84!21.19!RARA;;chr14:64971288..64971316,-!p2@ZBTB25!0.84!19.36!ZBTB25;;chr9:110252074..110252079,-!p3@KLF4!0.84!10.05!KLF4;;chr10:114710083..114710092,+!p8@TCF7L2!0.84!8.04!TCF7L2;;chr2:61108808..61108821,+!p3@REL!0.84!7.67!REL;;chr10:135044190..135044229,+!p3@UTF1!0.84!5.85!UTF1;;chr2:208031542..208031595,-!p2@KLF7!0.83!43.47!KLF7;;chr16:31885093..31885165,+!p1@ZNF267!0.82!92.79!ZNF267;;chr2:185463247..185463263,+!p1@ZNF804A!0.82!10.23!ZNF804A;;chr19:16435735..16435773,+!p4@KLF2!0.82!5.66!KLF2;;chrX:70712265..70712303,+!p4@TAF1!0.82!5.66!TAF1;;chr9:117150254..117150271,-!p1@AKNA!0.81!15.71!AKNA;;chr1:935398..935465,-!p2@HES4!0.81!11.87!HES4;;chr22:21771656..21771662,+!p1@HIC2!0.81!5.48!HIC2;;chr2:8822176..8822196,+!p1@ID2!0.80!820.89!ID2;;chr18:51750948..51751059,-!p1@MBD2!0.80!184.49!MBD2;;chr20:56195525..56195556,-!p2@ZBP1!0.80!5.30!ZBP1;;chr11:615942..615957,-!p1@IRF7!0.79!53.16!IRF7;;chr10:104154246..104154347,+!p3@NFKB2!0.79!34.71!NFKB2;;chr20:48807648..48807671,+!p9@CEBPB!0.79!7.67!CEBPB;;chr19:45972701..45972774,+!p2@FOSB!0.79!7.31!FOSB;;chr10:31288398..31288455,-!p2@ZNF438!0.78!6.03!ZNF438;;chrX:101186981..101187030,-!p1@ZMAT1!0.77!17.35!ZMAT1;;chr19:42627037..42627084,-!p3@POU2F2!0.77!4.93!POU2F2;;chr6:170862932..170862947,+!p5@TBP!0.77!4.93!TBP;;chr6:44355499..44355514,+!p3@CDC5L!0.76!5.30!CDC5L;;chr8:48650697..48650708,-!p2@CEBPD!0.75!38.54!CEBPD;;chr2:61108650..61108687,+!p2@REL!0.75!25.02!REL;;chr10:43932296..43932360,+!p1@ZNF487P!0.75!10.41!ZNF487P;;chr10:114710218..114710229,+!p4@TCF7L2!0.75!9.86!TCF7L2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.03!FOS;;chr15:90544182..90544195,+!p7@ZNF710!0.75!4.57!ZNF710;;chr11:2292226..2292270,-!p1@ASCL2!0.75!4.57!ASCL2;;chr6:130339710..130339745,+!p1@L3MBTL3!0.74!39.82!L3MBTL3;;chr9:88969339..88969422,-!p2@ZCCHC6!0.74!38.72!ZCCHC6;;chr2:145277882..145277967,-!p3@ZEB2!0.74!8.22!ZEB2;;chr1:44679370..44679422,+!p3@DMAP1!0.74!6.21!DMAP1;;chr6:44233252..44233296,-!p1@NFKBIE!0.73!48.04!NFKBIE;;chr8:71316021..71316068,-!p1@NCOA2!0.73!45.48!NCOA2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!35.07!STAT5A;;chrX:129244454..129244488,-!p1@ELF4!0.73!34.89!ELF4;;chr1:935467..935484,-!p1@HES4!0.73!21.55!HES4;;chr21:30671189..30671207,+!p4@BACH1!0.73!16.99!BACH1;;chr19:4067174..4067200,-!p9@ZBTB7A!0.73!5.48!ZBTB7A;;chr13:41593405..41593416,-!p9@ELF1!0.73!4.38!ELF1;;chrY:2803415..2803468,+!p1@ZFY!0.73!4.38!ZFY;;chr2:10183651..10183713,+!p1@KLF11!0.72!34.52!KLF11;;chr12:72056749..72056767,+!p6@THAP2!0.72!4.75!THAP2;;chr6:108880956..108881011,+!p1@FOXO3!0.71!30.87!FOXO3;;chr10:51572339..51572376,+!p4@NCOA4!0.71!10.23!NCOA4;;chr9:88969303..88969335,-!p1@ZCCHC6!0.70!42.74!ZCCHC6;;chr5:172483347..172483407,+!p1@C5orf41!0.70!33.98!CREBRF;;chr6:28092375..28092412,+!p1@ZSCAN16!0.70!18.63!ZSCAN16;;chr6:41040923..41040952,+!p2@NFYA!0.70!11.69!NFYA;;chr20:48807875..48807982,+!p2@CEBPB!0.69!98.46!CEBPB;;chr19:49140609..49140643,-!p1@DBP!0.69!25.02!DBP;;chr1:40367530..40367597,-!p1@MYCL1!0.69!7.67!MYCL1;;chr2:48541789..48541874,+!p1@FOXN2!0.68!99.00!FOXN2;;chr5:176738887..176738934,-!p1@MXD3!0.68!29.04!MXD3;;chr9:117160738..117160782,-!p2@AKNA!0.68!17.72!AKNA;;chr2:60780607..60780624,-!p2@BCL11A!0.68!12.97!BCL11A;;chr2:145274981..145274994,-!p9@ZEB2!0.68!5.85!ZEB2;;chr14:75988771..75988826,+!p1@BATF!0.68!5.30!BATF;;chr19:13213704..13213726,-!p3@LYL1!0.67!5.11!LYL1;;chr19:10416315..10416333,-!p1@ZGLP1!0.67!3.65!ZGLP1;;chr19:13213691..13213696,-!p9@LYL1!0.67!3.65!LYL1;;chr6:391743..391759,+!p1@IRF4!0.67!3.65!IRF4;;chr14:24630465..24630531,+!p1@IRF9!0.66!160.01!IRF9;;chr3:39195075..39195088,-!p1@CSRNP1!0.66!25.94!CSRNP1;;chr2:60780753..60780800,-!p1@BCL11A!0.66!19.91!BCL11A;;chr4:106067811..106067854,+!p2@TET2!0.66!19.00!TET2;;chr16:3313791..3313834,+!p2@ZNF263!0.66!8.77!ZNF263;;chr3:101546827..101546847,+!p2@NFKBIZ!0.66!5.30!NFKBIZ;;chr2:176033066..176033087,-!p2@ATF2!0.66!4.75!ATF2;;chr3:187463248..187463264,-!p1@BCL6!0.65!87.86!BCL6;;chr9:3525727..3525828,-!p2@RFX3!0.65!9.86!RFX3;;chr1:158979851..158979865,+!p5@IFI16!0.65!8.40!IFI16;;chr18:51750414..51750449,-!p5@MBD2!0.65!7.31!MBD2;;chr20:48807615..48807644,+!p6@CEBPB!0.65!6.21!CEBPB;;chr1:161014760..161014788,-!p4@USF1!0.65!3.47!USF1;;chr2:145275982..145276003,-!p7@ZEB2!0.65!3.47!ZEB2;;chr2:145277632..145277638,-!p17@ZEB2!0.65!3.47!ZEB2;;chr12:54694807..54694832,-!p3@NFE2!0.65!3.47!NFE2;;chr10:3827389..3827408,-!p1@KLF6!0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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002396;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11911-125G3 | |id=FF:11911-125G3 | ||
|is_a=EFO:0002091;;FF:0011100 | |is_a=EFO:0002091;;FF:0011100 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13548 | |||
|library_id_phase_based=2:CNhs13548 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11911 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11911 | |||
|name=CD14-CD16+ Monocytes, donor3 | |name=CD14-CD16+ Monocytes, donor3 | ||
|namespace= | |namespace= | ||
Line 48: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 79: | ||
|rna_weight_ug=2.1042 | |rna_weight_ug=2.1042 | ||
|sample_age=23 | |sample_age=23 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 84: | Line 101: | ||
|top_motifs=HMX1:2.17358459849;SPI1:2.16959058435;NANOG{mouse}:2.08612122065;IRF1,2:2.03124168708;SPIB:1.98598218255;IRF7:1.72297356184;DMAP1_NCOR{1,2}_SMARC:1.62047714669;NFIL3:1.58472095762;RFX2..5_RFXANK_RFXAP:1.537588976;ETS1,2:1.5356601693;FOXN1:1.52455313459;TLX2:1.43432368088;FOX{I1,J2}:1.42428410685;ATF5_CREB3:1.40814981476;HES1:1.37645918115;ELF1,2,4:1.34068240508;ALX1:1.27487489034;TGIF1:1.27233419514;FOX{F1,F2,J1}:1.26235639884;CREB1:1.17136593201;SREBF1,2:1.1410315722;RUNX1..3:1.08669702394;FOXO1,3,4:1.02387223826;PAX2:0.994161791481;FOXA2:0.981337230708;GLI1..3:0.874317416334;MAFB:0.854782333563;ATF4:0.781962075617;TAL1_TCF{3,4,12}:0.742842854628;ESRRA:0.686313295703;NFKB1_REL_RELA:0.66411675413;FOX{D1,D2}:0.625162673142;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.623192401262;PAX8:0.597509899134;NR6A1:0.592943807411;CRX:0.526723642902;CDX1,2,4:0.514748898301;NR5A1,2:0.499547755828;EP300:0.4771646195;ELK1,4_GABP{A,B1}:0.476547105608;ATF2:0.457012373906;FOXP3:0.452998333662;BPTF:0.411619621085;HMGA1,2:0.401300571289;POU5F1:0.363980560366;PAX4:0.305808075175;FOXP1:0.305389360452;HIF1A:0.29497643267;RFX1:0.288241035403;HLF:0.287247237851;ALX4:0.276822861847;TOPORS:0.274131306204;CEBPA,B_DDIT3:0.262348998314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.26061242531;NKX2-2,8:0.249472402739;JUN:0.23950486;NR1H4:0.208070896543;TFCP2:0.171708641091;FOXQ1:0.149514602226;ZBTB16:0.125093358267;ESR1:0.121291468053;HBP1_HMGB_SSRP1_UBTF:0.111665083255;PAX3,7:0.100165582616;FOSL2:0.0911431008124;ZNF148:0.0625633386228;EN1,2:0.0588187855357;HNF4A_NR2F1,2:0.0573132637169;NFIX:0.0533271611094;HOXA9_MEIS1:0.033903932754;MEF2{A,B,C,D}:0.030259295349;IKZF2:-0.00306040459385;TFAP4:-0.00927814591902;GATA6:-0.0142362413404;ATF6:-0.014480724345;NANOG:-0.0289221116117;OCT4_SOX2{dimer}:-0.0338920802384;EBF1:-0.0470009088671;PITX1..3:-0.0476884597469;RBPJ:-0.0589485531141;PDX1:-0.0622072526527;T:-0.0809019700316;RXRA_VDR{dimer}:-0.0946483427626;PBX1:-0.10205971528;PPARG:-0.105092891138;BACH2:-0.11439608932;POU2F1..3:-0.131106811687;FOS_FOS{B,L1}_JUN{B,D}:-0.144840882562;RORA:-0.150165792222;PRRX1,2:-0.208460143261;NFE2L2:-0.220781782862;STAT2,4,6:-0.223455990472;NFE2:-0.240505438153;AHR_ARNT_ARNT2:-0.250606190845;VSX1,2:-0.270127262888;GATA4:-0.275630341022;CUX2:-0.335457034629;MYB:-0.358019764021;SPZ1:-0.363667438146;HOX{A5,B5}:-0.36544468556;NHLH1,2:-0.378535104883;AIRE:-0.380198307662;FOXD3:-0.382220372973;SOX2:-0.393920141134;DBP:-0.396608869926;MYFfamily:-0.406436628826;ARID5B:-0.417663713776;AR:-0.421878145474;NFE2L1:-0.425969903251;POU1F1:-0.430343640689;HSF1,2:-0.441611511876;REST:-0.456897425689;GZF1:-0.471724652434;PAX1,9:-0.492373975031;SRF:-0.492729106674;MYOD1:-0.523705663941;HNF1A:-0.548555966804;HOX{A4,D4}:-0.562778364434;NKX2-3_NKX2-5:-0.576181419476;HOX{A6,A7,B6,B7}:-0.579489452908;SOX{8,9,10}:-0.584313062179;ADNP_IRX_SIX_ZHX:-0.616939498526;YY1:-0.644294015842;SOX5:-0.644308652012;BREu{core}:-0.652573014764;NFY{A,B,C}:-0.668594773581;PRDM1:-0.683531076466;STAT1,3:-0.716003182496;ZEB1:-0.721672104447;MTF1:-0.725290092274;FOXL1:-0.726020708265;ONECUT1,2:-0.772201501461;E2F1..5:-0.796118625588;NKX6-1,2:-0.80527941236;TFAP2{A,C}:-0.81209885558;LEF1_TCF7_TCF7L1,2:-0.851116329375;HAND1,2:-0.859040488445;NKX3-2:-0.892184588933;ZFP161:-0.930545180501;STAT5{A,B}:-0.935348971353;XBP1:-0.948919569282;RXR{A,B,G}:-0.970214739339;KLF4:-0.975784304132;SNAI1..3:-0.979496053413;NRF1:-0.992135148099;IKZF1:-1.04488759719;ZNF238:-1.06381755311;PAX5:-1.06886554073;LHX3,4:-1.07858992884;TP53:-1.07917670349;NKX3-1:-1.09925812321;TFAP2B:-1.10780472248;SMAD1..7,9:-1.11969387493;SP1:-1.13108256961;EGR1..3:-1.14338863887;MTE{core}:-1.14714192689;GFI1:-1.18034094628;TEF:-1.18562508092;PATZ1:-1.2033066402;GCM1,2:-1.22906200528;MZF1:-1.23632820274;MED-1{core}:-1.23702782726;PAX6:-1.24063091803;TBP:-1.24715847527;LMO2:-1.24763685657;ZNF423:-1.24983269535;GFI1B:-1.2595882729;ZIC1..3:-1.26254427512;MYBL2:-1.29675410988;TLX1..3_NFIC{dimer}:-1.30800566571;RREB1:-1.321984206;ZNF143:-1.32711101584;POU6F1:-1.33988153085;ZBTB6:-1.36484827666;TFDP1:-1.36629089407;HIC1:-1.39838671061;GTF2I:-1.39861830029;CDC5L:-1.39980562472;UFEwm:-1.45007689495;NKX2-1,4:-1.46273545419;NFATC1..3:-1.48968947668;EVI1:-1.49292331429;TEAD1:-1.52985165404;XCPE1{core}:-1.57140626629;MAZ:-1.57170027642;ZNF384:-1.61881984146;FOXM1:-1.64144279352;bHLH_family:-1.66409599212;NR3C1:-1.66706466589;GTF2A1,2:-1.83003327817;SOX17:-1.93983251086;TBX4,5:-1.95201806425;POU3F1..4:-2.28631157079 | |top_motifs=HMX1:2.17358459849;SPI1:2.16959058435;NANOG{mouse}:2.08612122065;IRF1,2:2.03124168708;SPIB:1.98598218255;IRF7:1.72297356184;DMAP1_NCOR{1,2}_SMARC:1.62047714669;NFIL3:1.58472095762;RFX2..5_RFXANK_RFXAP:1.537588976;ETS1,2:1.5356601693;FOXN1:1.52455313459;TLX2:1.43432368088;FOX{I1,J2}:1.42428410685;ATF5_CREB3:1.40814981476;HES1:1.37645918115;ELF1,2,4:1.34068240508;ALX1:1.27487489034;TGIF1:1.27233419514;FOX{F1,F2,J1}:1.26235639884;CREB1:1.17136593201;SREBF1,2:1.1410315722;RUNX1..3:1.08669702394;FOXO1,3,4:1.02387223826;PAX2:0.994161791481;FOXA2:0.981337230708;GLI1..3:0.874317416334;MAFB:0.854782333563;ATF4:0.781962075617;TAL1_TCF{3,4,12}:0.742842854628;ESRRA:0.686313295703;NFKB1_REL_RELA:0.66411675413;FOX{D1,D2}:0.625162673142;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.623192401262;PAX8:0.597509899134;NR6A1:0.592943807411;CRX:0.526723642902;CDX1,2,4:0.514748898301;NR5A1,2:0.499547755828;EP300:0.4771646195;ELK1,4_GABP{A,B1}:0.476547105608;ATF2:0.457012373906;FOXP3:0.452998333662;BPTF:0.411619621085;HMGA1,2:0.401300571289;POU5F1:0.363980560366;PAX4:0.305808075175;FOXP1:0.305389360452;HIF1A:0.29497643267;RFX1:0.288241035403;HLF:0.287247237851;ALX4:0.276822861847;TOPORS:0.274131306204;CEBPA,B_DDIT3:0.262348998314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.26061242531;NKX2-2,8:0.249472402739;JUN:0.23950486;NR1H4:0.208070896543;TFCP2:0.171708641091;FOXQ1:0.149514602226;ZBTB16:0.125093358267;ESR1:0.121291468053;HBP1_HMGB_SSRP1_UBTF:0.111665083255;PAX3,7:0.100165582616;FOSL2:0.0911431008124;ZNF148:0.0625633386228;EN1,2:0.0588187855357;HNF4A_NR2F1,2:0.0573132637169;NFIX:0.0533271611094;HOXA9_MEIS1:0.033903932754;MEF2{A,B,C,D}:0.030259295349;IKZF2:-0.00306040459385;TFAP4:-0.00927814591902;GATA6:-0.0142362413404;ATF6:-0.014480724345;NANOG:-0.0289221116117;OCT4_SOX2{dimer}:-0.0338920802384;EBF1:-0.0470009088671;PITX1..3:-0.0476884597469;RBPJ:-0.0589485531141;PDX1:-0.0622072526527;T:-0.0809019700316;RXRA_VDR{dimer}:-0.0946483427626;PBX1:-0.10205971528;PPARG:-0.105092891138;BACH2:-0.11439608932;POU2F1..3:-0.131106811687;FOS_FOS{B,L1}_JUN{B,D}:-0.144840882562;RORA:-0.150165792222;PRRX1,2:-0.208460143261;NFE2L2:-0.220781782862;STAT2,4,6:-0.223455990472;NFE2:-0.240505438153;AHR_ARNT_ARNT2:-0.250606190845;VSX1,2:-0.270127262888;GATA4:-0.275630341022;CUX2:-0.335457034629;MYB:-0.358019764021;SPZ1:-0.363667438146;HOX{A5,B5}:-0.36544468556;NHLH1,2:-0.378535104883;AIRE:-0.380198307662;FOXD3:-0.382220372973;SOX2:-0.393920141134;DBP:-0.396608869926;MYFfamily:-0.406436628826;ARID5B:-0.417663713776;AR:-0.421878145474;NFE2L1:-0.425969903251;POU1F1:-0.430343640689;HSF1,2:-0.441611511876;REST:-0.456897425689;GZF1:-0.471724652434;PAX1,9:-0.492373975031;SRF:-0.492729106674;MYOD1:-0.523705663941;HNF1A:-0.548555966804;HOX{A4,D4}:-0.562778364434;NKX2-3_NKX2-5:-0.576181419476;HOX{A6,A7,B6,B7}:-0.579489452908;SOX{8,9,10}:-0.584313062179;ADNP_IRX_SIX_ZHX:-0.616939498526;YY1:-0.644294015842;SOX5:-0.644308652012;BREu{core}:-0.652573014764;NFY{A,B,C}:-0.668594773581;PRDM1:-0.683531076466;STAT1,3:-0.716003182496;ZEB1:-0.721672104447;MTF1:-0.725290092274;FOXL1:-0.726020708265;ONECUT1,2:-0.772201501461;E2F1..5:-0.796118625588;NKX6-1,2:-0.80527941236;TFAP2{A,C}:-0.81209885558;LEF1_TCF7_TCF7L1,2:-0.851116329375;HAND1,2:-0.859040488445;NKX3-2:-0.892184588933;ZFP161:-0.930545180501;STAT5{A,B}:-0.935348971353;XBP1:-0.948919569282;RXR{A,B,G}:-0.970214739339;KLF4:-0.975784304132;SNAI1..3:-0.979496053413;NRF1:-0.992135148099;IKZF1:-1.04488759719;ZNF238:-1.06381755311;PAX5:-1.06886554073;LHX3,4:-1.07858992884;TP53:-1.07917670349;NKX3-1:-1.09925812321;TFAP2B:-1.10780472248;SMAD1..7,9:-1.11969387493;SP1:-1.13108256961;EGR1..3:-1.14338863887;MTE{core}:-1.14714192689;GFI1:-1.18034094628;TEF:-1.18562508092;PATZ1:-1.2033066402;GCM1,2:-1.22906200528;MZF1:-1.23632820274;MED-1{core}:-1.23702782726;PAX6:-1.24063091803;TBP:-1.24715847527;LMO2:-1.24763685657;ZNF423:-1.24983269535;GFI1B:-1.2595882729;ZIC1..3:-1.26254427512;MYBL2:-1.29675410988;TLX1..3_NFIC{dimer}:-1.30800566571;RREB1:-1.321984206;ZNF143:-1.32711101584;POU6F1:-1.33988153085;ZBTB6:-1.36484827666;TFDP1:-1.36629089407;HIC1:-1.39838671061;GTF2I:-1.39861830029;CDC5L:-1.39980562472;UFEwm:-1.45007689495;NKX2-1,4:-1.46273545419;NFATC1..3:-1.48968947668;EVI1:-1.49292331429;TEAD1:-1.52985165404;XCPE1{core}:-1.57140626629;MAZ:-1.57170027642;ZNF384:-1.61881984146;FOXM1:-1.64144279352;bHLH_family:-1.66409599212;NR3C1:-1.66706466589;GTF2A1,2:-1.83003327817;SOX17:-1.93983251086;TBX4,5:-1.95201806425;POU3F1..4:-2.28631157079 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11911-125G3;search_select_hide=table117:FF:11911-125G3 | |||
}} | }} |
Latest revision as of 18:28, 4 June 2020
Name: | CD14-CD16+ Monocytes, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13548 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13548
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13548
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0869 |
10 | 10 | 0.0254 |
100 | 100 | 0.787 |
101 | 101 | 0.323 |
102 | 102 | 0.452 |
103 | 103 | 0.312 |
104 | 104 | 0.567 |
105 | 105 | 0.351 |
106 | 106 | 0.0194 |
107 | 107 | 0.815 |
108 | 108 | 0.861 |
109 | 109 | 0.0306 |
11 | 11 | 0.157 |
110 | 110 | 0.231 |
111 | 111 | 0.0324 |
112 | 112 | 0.233 |
113 | 113 | 0.387 |
114 | 114 | 0.00666 |
115 | 115 | 0.336 |
116 | 116 | 0.946 |
117 | 117 | 0.0192 |
118 | 118 | 0.123 |
119 | 119 | 0.275 |
12 | 12 | 0.296 |
120 | 120 | 0.859 |
121 | 121 | 0.963 |
122 | 122 | 0.56 |
123 | 123 | 2.30124e-4 |
124 | 124 | 0.349 |
125 | 125 | 0.0575 |
126 | 126 | 0.158 |
127 | 127 | 0.351 |
128 | 128 | 0.0977 |
129 | 129 | 0.982 |
13 | 13 | 0.125 |
130 | 130 | 0.275 |
131 | 131 | 0.878 |
132 | 132 | 0.0416 |
133 | 133 | 0.164 |
134 | 134 | 0.716 |
135 | 135 | 0.12 |
136 | 136 | 0.744 |
137 | 137 | 1.07535e-4 |
138 | 138 | 0.281 |
139 | 139 | 0.0129 |
14 | 14 | 0.393 |
140 | 140 | 0.212 |
141 | 141 | 0.513 |
142 | 142 | 0.934 |
143 | 143 | 0.158 |
144 | 144 | 0.979 |
145 | 145 | 0.287 |
146 | 146 | 0.994 |
147 | 147 | 0.428 |
148 | 148 | 0.0576 |
149 | 149 | 0.73 |
15 | 15 | 0.135 |
150 | 150 | 0.525 |
151 | 151 | 0.259 |
152 | 152 | 0.343 |
153 | 153 | 0.609 |
154 | 154 | 0.783 |
155 | 155 | 0.0743 |
156 | 156 | 0.861 |
157 | 157 | 0.738 |
158 | 158 | 0.151 |
159 | 159 | 0.223 |
16 | 16 | 0.482 |
160 | 160 | 0.5 |
161 | 161 | 0.575 |
162 | 162 | 0.647 |
163 | 163 | 0.265 |
164 | 164 | 0.113 |
165 | 165 | 0.126 |
166 | 166 | 0.477 |
167 | 167 | 0.048 |
168 | 168 | 0.554 |
169 | 169 | 0.0142 |
17 | 17 | 0.367 |
18 | 18 | 0.215 |
19 | 19 | 0.289 |
2 | 2 | 0.955 |
20 | 20 | 0.454 |
21 | 21 | 0.419 |
22 | 22 | 0.301 |
23 | 23 | 0.327 |
24 | 24 | 0.301 |
25 | 25 | 0.1 |
26 | 26 | 0.0656 |
27 | 27 | 0.55 |
28 | 28 | 0.478 |
29 | 29 | 0.08 |
3 | 3 | 0.0837 |
30 | 30 | 0.347 |
31 | 31 | 0.604 |
32 | 32 | 0.618 |
33 | 33 | 0.176 |
34 | 34 | 0.593 |
35 | 35 | 0.159 |
36 | 36 | 0.027 |
37 | 37 | 0.0547 |
38 | 38 | 0.471 |
39 | 39 | 0.737 |
4 | 4 | 0.918 |
40 | 40 | 0.146 |
41 | 41 | 0.0697 |
42 | 42 | 0.275 |
43 | 43 | 0.0869 |
44 | 44 | 0.617 |
45 | 45 | 0.943 |
46 | 46 | 0.139 |
47 | 47 | 0.331 |
48 | 48 | 0.353 |
49 | 49 | 0.0867 |
5 | 5 | 0.108 |
50 | 50 | 0.952 |
51 | 51 | 0.406 |
52 | 52 | 0.335 |
53 | 53 | 0.262 |
54 | 54 | 0.432 |
55 | 55 | 0.305 |
56 | 56 | 0.792 |
57 | 57 | 0.761 |
58 | 58 | 0.0289 |
59 | 59 | 0.148 |
6 | 6 | 0.782 |
60 | 60 | 0.0453 |
61 | 61 | 0.233 |
62 | 62 | 0.00807 |
63 | 63 | 0.513 |
64 | 64 | 0.343 |
65 | 65 | 0.37 |
66 | 66 | 0.367 |
67 | 67 | 0.249 |
68 | 68 | 0.825 |
69 | 69 | 0.608 |
7 | 7 | 0.136 |
70 | 70 | 0.0207 |
71 | 71 | 0.0456 |
72 | 72 | 0.244 |
73 | 73 | 0.137 |
74 | 74 | 0.385 |
75 | 75 | 0.032 |
76 | 76 | 0.214 |
77 | 77 | 0.628 |
78 | 78 | 0.27 |
79 | 79 | 0.267 |
8 | 8 | 0.282 |
80 | 80 | 0.315 |
81 | 81 | 0.182 |
82 | 82 | 0.146 |
83 | 83 | 0.746 |
84 | 84 | 0.696 |
85 | 85 | 0.0549 |
86 | 86 | 0.087 |
87 | 87 | 0.201 |
88 | 88 | 0.515 |
89 | 89 | 0.751 |
9 | 9 | 0.338 |
90 | 90 | 0.0542 |
91 | 91 | 0.46 |
92 | 92 | 0.482 |
93 | 93 | 0.444 |
94 | 94 | 0.0209 |
95 | 95 | 0.0637 |
96 | 96 | 0.281 |
97 | 97 | 0.982 |
98 | 98 | 0.104 |
99 | 99 | 0.0737 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13548
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011100 human CD14-CD16-positive Monocytes sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000875 (non-classical monocyte)
0002396 (CD14-low, CD16-positive monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011100 (human CD14-CD16-positive Monocytes sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)