FFCP PHASE1:Mm9::chrX:162676958..162676986,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14758 | |EntrezGene=14758 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=P35803 | |UniProt=P35803 | ||
|association_with_transcript=54bp_to_ENSMUST00000060210,ENSMUST00000112233_5end | |association_with_transcript=54bp_to_ENSMUST00000060210,ENSMUST00000112233_5end | ||
|cluster_id=chrX:162676958..162676986,+ | |||
|description=CAGE_peak_3_at_Gpm6b_5end | |description=CAGE_peak_3_at_Gpm6b_5end | ||
|id=chrX:162676958..162676986,+ | |id=chrX:162676958..162676986,+ | ||
|ontology_enrichment_celltype=CL:0000221!3.24e-13!44;CL:0000133!3.24e-13!44;CL:0002319!9.17e-13!43;CL:0000055!1.75e-12!50;CL:0000393!5.88e-10!39;CL:0000211!5.88e-10!39;CL:0000540!2.18e-09!33;CL:0000047!2.18e-09!33;CL:0000031!2.18e-09!33;CL:0000404!2.18e-09!33 | |ontology_enrichment_celltype=CL:0000221!3.24e-13!44;CL:0000133!3.24e-13!44;CL:0002319!9.17e-13!43;CL:0000055!1.75e-12!50;CL:0000393!5.88e-10!39;CL:0000211!5.88e-10!39;CL:0000540!2.18e-09!33;CL:0000047!2.18e-09!33;CL:0000031!2.18e-09!33;CL:0000404!2.18e-09!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.84e-13,44;CL:0000133,2.84e-13,44;CL:0002319,8.42e-13,43;CL:0000393,6.52e-10,39;CL:0000211,6.52e-10,39;CL:0000540,1.60e-09,33;CL:0000047,1.60e-09,33;CL:0000031,1.60e-09,33;CL:0000404,1.60e-09,33;CL:0002321,1.24e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.13e-25!75;UBERON:0001016!8.13e-25!75;UBERON:0004121!6.57e-24!102;UBERON:0000924!6.57e-24!102;UBERON:0006601!6.57e-24!102;UBERON:0001017!7.18e-24!73;UBERON:0005743!7.18e-24!73;UBERON:0000033!5.09e-17!63;UBERON:0001049!6.01e-16!52;UBERON:0005068!6.01e-16!52;UBERON:0006241!6.01e-16!52;UBERON:0007135!6.01e-16!52;UBERON:0002346!1.10e-15!71;UBERON:0003075!1.10e-15!71;UBERON:0007284!1.10e-15!71;UBERON:0000955!3.42e-15!50;UBERON:0006238!3.42e-15!50;UBERON:0002616!1.39e-14!49;UBERON:0002020!2.41e-14!34;UBERON:0002791!5.44e-12!29;UBERON:0003528!5.44e-12!29;UBERON:0001893!5.44e-12!29;UBERON:0003056!1.50e-11!49;UBERON:0003080!1.86e-10!40;UBERON:0002780!7.02e-10!39;UBERON:0001890!7.02e-10!39;UBERON:0006240!7.02e-10!39;UBERON:0000956!2.89e-09!21;UBERON:0001869!2.89e-09!21;UBERON:0000203!2.89e-09!21;UBERON:0002619!1.70e-08!17;UBERON:0002021!2.63e-07!10;UBERON:0000411!2.63e-07!10;UBERON:0001950!2.63e-07!10;UBERON:0000479!3.09e-07!349;UBERON:0007811!4.37e-07!86;UBERON:0004111!5.68e-07!122 | |ontology_enrichment_uberon=UBERON:0000073!8.13e-25!75;UBERON:0001016!8.13e-25!75;UBERON:0004121!6.57e-24!102;UBERON:0000924!6.57e-24!102;UBERON:0006601!6.57e-24!102;UBERON:0001017!7.18e-24!73;UBERON:0005743!7.18e-24!73;UBERON:0000033!5.09e-17!63;UBERON:0001049!6.01e-16!52;UBERON:0005068!6.01e-16!52;UBERON:0006241!6.01e-16!52;UBERON:0007135!6.01e-16!52;UBERON:0002346!1.10e-15!71;UBERON:0003075!1.10e-15!71;UBERON:0007284!1.10e-15!71;UBERON:0000955!3.42e-15!50;UBERON:0006238!3.42e-15!50;UBERON:0002616!1.39e-14!49;UBERON:0002020!2.41e-14!34;UBERON:0002791!5.44e-12!29;UBERON:0003528!5.44e-12!29;UBERON:0001893!5.44e-12!29;UBERON:0003056!1.50e-11!49;UBERON:0003080!1.86e-10!40;UBERON:0002780!7.02e-10!39;UBERON:0001890!7.02e-10!39;UBERON:0006240!7.02e-10!39;UBERON:0000956!2.89e-09!21;UBERON:0001869!2.89e-09!21;UBERON:0000203!2.89e-09!21;UBERON:0002619!1.70e-08!17;UBERON:0002021!2.63e-07!10;UBERON:0000411!2.63e-07!10;UBERON:0001950!2.63e-07!10;UBERON:0000479!3.09e-07!349;UBERON:0007811!4.37e-07!86;UBERON:0004111!5.68e-07!122 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.39e-26,95;UBERON:0000924,1.39e-26,95;UBERON:0006601,1.39e-26,95;UBERON:0001016,2.83e-25,75;UBERON:0001017,2.77e-24,73;UBERON:0010371,9.83e-19,73;UBERON:0002346,5.30e-18,64;UBERON:0003075,5.30e-18,64;UBERON:0007284,5.30e-18,64;UBERON:0000073,4.56e-17,54;UBERON:0001049,5.66e-16,52;UBERON:0005068,5.66e-16,52;UBERON:0006241,5.66e-16,52;UBERON:0007135,5.66e-16,52;UBERON:0002020,1.10e-14,34;UBERON:0000955,1.90e-13,47;UBERON:0006238,1.90e-13,47;UBERON:0002616,7.78e-13,46;UBERON:0003528,3.31e-12,29;UBERON:0002791,3.31e-12,29;UBERON:0001893,3.31e-12,29;UBERON:0003056,1.33e-11,49;UBERON:0010314,1.25e-10,92;UBERON:0003080,1.63e-10,40;UBERON:0002780,6.52e-10,39;UBERON:0001890,6.52e-10,39;UBERON:0006240,6.52e-10,39;UBERON:0000956,2.52e-09,21;UBERON:0001869,2.52e-09,21;UBERON:0000203,2.52e-09,21;UBERON:0002619,1.71e-08,17;UBERON:0002021,1.23e-07,10;UBERON:0000411,1.23e-07,10;UBERON:0001950,1.23e-07,10 | |||
|phase1_expression=13.4525031568027,0,0,0,0,0.16787927191189,0,0.258246646883153,0,0,0,0,0,0,0,0.607425802169478,0,0.157731082679119,0.274228867211478,0.84877930359606,16.4133549991565,0,0,0.47997726838022,0.45881856213434,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0.408338712524738,0,0,0,0,0,0,9.56815816614387,7.50189291024408,0.734187008646726,0.782391344348039,20.7123898561424,23.0670491871195,37.3305406222624,10.0790223570261,15.8127820801469,0,0,0,1.80081605225163,12.0344044774278,5.15672092277442,3.84401275633236,3.70293685490423,1.26766280701236,2.03306719241479,0.889294796111139,0,0.988866362566974,0.7104801149461,8.68840320503374,18.0582603501131,4.35496371695606,3.64516033495565,3.57552434297349,15.1395021734016,16.565140571371,3.55223317723367,2.68367318851062,0.919218786610021,36.3382407297983,56.9485527859937,48.3860579757167,2.2420668914133,3.11057988248193,5.73004707612436,36.5729728691809,38.2678574821542,51.493009500785,29.4628585473668,26.7658759902314,9.31997229126503,7.34544075331885,21.6890377506474,4.63783181922684,0,0,0,0,0,2.80888840263504,9.20323741921512,5.97507810586598,5.65343319216544,15.6336195952115,15.3991772897181,22.9324715735981,0,3.24736561516821,4.56047757855178,4.04419556011827,2.39786147410026,13.9826457169473,0.445326417194474,2.4287945747259,2.13125834818499,1.15307748628029,1.80867168663147,1.99900802130698,0,1.48316980640624,0.722996784599558,0.884610551949874,2.75003644910596,1.54589062922275,0.969750506270444,0,108.914456488296,101.581652804526,0.255457055208591,0,0,0,82.3848516726525,96.5326271947302,15.2041766056566,79.7853629682549,69.2988889365196,79.9983971554306,70.7371906975423,0.916554274652847,1.61729061793121,3.53811861807145,6.94458124425364,0.390361328888111,1.83921683546778,1.98068342785884,4.52114453507145,7.48401490664606,13.3238269096244,8.99536555773397,25.3529303324235,0.431135985865684,0.945530400839096,0.703804496655795,0.657587197282725,1.11218899690239,1.74126083261083,2.05782136407943,1.59227413454795,0,0,0,0.414251545071004,0.234526059981096,0.36012412292203,0.473489471170421,0.590292695242212,0.462801338662135,0.697601834251224,0.804820204198858,0.700592054203017,0.329119699826961,0.656669856316381,1.21603214318784,1.75439984910399,1.75640092232841,2.54992195644706,93.9996070081649,23.2564423977183,0,0.528901133327089,0.426576501070468,0.928946687441754,0.644337306610467,0.605050573870028,0.22237804384487,0.760902504450237,0,0.823494773620054,0.754005626400808,0.795825888164603,0.58489226135736,0.898819408654221,0.432276099749388,0.199141273254367,1.89667900953082,1.14248512609729,2.25415471346161,0.814605311381257,2.13347735884388,1.33258057791605,1.58091342810643,2.21415221969403,2.66897837330337,2.22114895059241,0.592905254174298,0,0.196558995113203,0,0.405720242777006,0.482354319504834,0.763877555344259,0.287696137450811,0,0.549122826376163,1.43768206527355,1.48856379067401,0.624075346229121,0,0.358794827043824,0,13.1174765018289,0.757965647081939,4.23708938749267,3.05541154395339,4.45911471748154,5.69521275302174,6.66522194480839,7.61021226645415,9.61574379047765,11.5161638617363,8.29164797018933,15.8947415274266,8.63424909329478,8.24499633914616,0,0,12.7858710984949,16.2802680319792,96.8120057626385,82.9858741072799,0,1.51482556322624,3.78609863299508,8.19921363022941,6.89354872744957,11.709471099675,10.6943363559549,13.0215204162863,7.69140333182299,7.89090816360542,5.53402889125133,68.7627617142667,2.55492153374884,0.712262414669021,1.46598263418218,4.28922319728592,1.32745138339963,4.61283208694465,3.32555912661226,5.09233715340925,2.95301892880773,5.84126781093462,3.35956781118687,5.08947221268508,4.27796854061666,0.948110273807448,1.05418608574999,0,3.06395645178409,0.18006109403131,0.258717367565509,0.428674070063185,1.77340233642274,1.78368817602071,1.97458824722545,1.522324745573,0.469343416127421,1.90648863777438,1.98475558249466,1.15420377059036,1.61464426695906,1.38719727334758,2.02932984805332,1.96969079694074,0.291480836629851,106.434123354033,3.58828849675491,0.82554747185289,1.11116716421827,1.31857919903284,1.77702496037333,1.83022538565218,0,0.139951452323658,0,3.81868247206045,1.10717597753397,2.23651413839534,2.26811215725783,5.43629569637619,1.52853794622324,3.50647300600534,4.29797969771747,1.83229159388821,0.388844919875379,3.72803587852155,4.50954350947352,2.8408143748356,2.15096037594227,3.30567020184881,2.32487682259916,3.04121025883401,4.5769323071844,4.1665403150064,5.45268591013696,14.2534631287344,8.92893019399383,2.52808896502543,0.608175645870493,0.821687657318618,0.25984164595559,0.179026695667481,0.39736270956253,0.240390899039938,0.147689527174577,0.201932899896295,0.15241361331,0.100826185136841,0.194915761479505,0.192423683280659,0,1.13365191807606,0,0,0.167884616364078,1.54551675225752,1.50145980360946,3.6630324853453,2.14368379079066,3.00943262421218,50.827665835536,53.3977274348325,54.4250737767427,54.1337524382616,63.7126743386697,59.6761178937863,56.7018900194717,46.3830839320947,53.4708042601361,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| ||
|short_description=p3@Gpm6b | |short_description=p3@Gpm6b | ||
}} | }} |
Latest revision as of 18:28, 1 October 2015
Short description: | p3@Gpm6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gpm6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 54bp_to_ENSMUST00000060210, ENSMUST00000112233_5end |
EntrezGene: | Gpm6b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.84e-13 | 44 |
neurectodermal cell | 2.84e-13 | 44 |
neural cell | 8.42e-13 | 43 |
electrically responsive cell | 6.52e-10 | 39 |
electrically active cell | 6.52e-10 | 39 |
neuron | 1.60e-09 | 33 |
neuronal stem cell | 1.60e-09 | 33 |
neuroblast | 1.60e-09 | 33 |
electrically signaling cell | 1.60e-09 | 33 |
embryonic cell | 1.24e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.39e-26 | 95 |
ectoderm | 1.39e-26 | 95 |
presumptive ectoderm | 1.39e-26 | 95 |
nervous system | 2.83e-25 | 75 |
central nervous system | 2.77e-24 | 73 |
ecto-epithelium | 9.83e-19 | 73 |
neurectoderm | 5.30e-18 | 64 |
neural plate | 5.30e-18 | 64 |
presumptive neural plate | 5.30e-18 | 64 |
regional part of nervous system | 4.56e-17 | 54 |
neural tube | 5.66e-16 | 52 |
neural rod | 5.66e-16 | 52 |
future spinal cord | 5.66e-16 | 52 |
neural keel | 5.66e-16 | 52 |
gray matter | 1.10e-14 | 34 |
brain | 1.90e-13 | 47 |
future brain | 1.90e-13 | 47 |
regional part of brain | 7.78e-13 | 46 |
brain grey matter | 3.31e-12 | 29 |
regional part of telencephalon | 3.31e-12 | 29 |
telencephalon | 3.31e-12 | 29 |
pre-chordal neural plate | 1.33e-11 | 49 |
structure with developmental contribution from neural crest | 1.25e-10 | 92 |
anterior neural tube | 1.63e-10 | 40 |
regional part of forebrain | 6.52e-10 | 39 |
forebrain | 6.52e-10 | 39 |
future forebrain | 6.52e-10 | 39 |
cerebral cortex | 2.52e-09 | 21 |
cerebral hemisphere | 2.52e-09 | 21 |
pallium | 2.52e-09 | 21 |
regional part of cerebral cortex | 1.71e-08 | 17 |
occipital lobe | 1.23e-07 | 10 |
visual cortex | 1.23e-07 | 10 |
neocortex | 1.23e-07 | 10 |