FFCP PHASE1:Mm9::chr3:146475915..146475947,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18749 | |EntrezGene=18749 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |MCL_coexpression_id=13 | ||
|TSSclassifier=NA | |||
|UniProt=P68181 | |UniProt=P68181 | ||
|association_with_transcript=0bp_to_ENSMUST00000102515_5end | |association_with_transcript=0bp_to_ENSMUST00000102515_5end | ||
|cluster_id=chr3:146475915..146475947,- | |||
|description=CAGE_peak_7_at_Prkacb_5end | |description=CAGE_peak_7_at_Prkacb_5end | ||
|id=chr3:146475915..146475947,- | |id=chr3:146475915..146475947,- | ||
|ontology_enrichment_celltype=CL:0000117!6.28e-15!23;CL:0000337!6.28e-15!23;CL:0000540!4.86e-14!33;CL:0000047!4.86e-14!33;CL:0000031!4.86e-14!33;CL:0000404!4.86e-14!33;CL:0000393!1.43e-12!39;CL:0000211!1.43e-12!39;CL:0000221!3.48e-11!44;CL:0000133!3.48e-11!44;CL:0002319!5.90e-11!43;CL:0000055!9.21e-10!50 | |ontology_enrichment_celltype=CL:0000117!6.28e-15!23;CL:0000337!6.28e-15!23;CL:0000540!4.86e-14!33;CL:0000047!4.86e-14!33;CL:0000031!4.86e-14!33;CL:0000404!4.86e-14!33;CL:0000393!1.43e-12!39;CL:0000211!1.43e-12!39;CL:0000221!3.48e-11!44;CL:0000133!3.48e-11!44;CL:0002319!5.90e-11!43;CL:0000055!9.21e-10!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.37e-15,23;CL:0000337,1.37e-15,23;CL:0000540,1.03e-14,33;CL:0000047,1.03e-14,33;CL:0000031,1.03e-14,33;CL:0000404,1.03e-14,33;CL:0000393,3.11e-13,39;CL:0000211,3.11e-13,39;CL:0000221,1.64e-11,44;CL:0000133,1.64e-11,44;CL:0002319,2.85e-11,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.60e-20!75;UBERON:0001016!7.60e-20!75;UBERON:0001017!9.96e-20!73;UBERON:0005743!9.96e-20!73;UBERON:0004121!7.12e-18!102;UBERON:0000924!7.12e-18!102;UBERON:0006601!7.12e-18!102;UBERON:0001049!2.60e-17!52;UBERON:0005068!2.60e-17!52;UBERON:0006241!2.60e-17!52;UBERON:0007135!2.60e-17!52;UBERON:0002346!8.41e-17!71;UBERON:0003075!8.41e-17!71;UBERON:0007284!8.41e-17!71;UBERON:0000955!8.10e-16!50;UBERON:0006238!8.10e-16!50;UBERON:0000033!2.73e-15!63;UBERON:0002616!2.97e-15!49;UBERON:0002020!1.60e-13!34;UBERON:0003080!6.19e-13!40;UBERON:0002780!2.28e-12!39;UBERON:0001890!2.28e-12!39;UBERON:0006240!2.28e-12!39;UBERON:0003056!2.73e-12!49;UBERON:0000025!3.65e-11!114;UBERON:0004111!1.33e-10!122;UBERON:0002791!2.36e-10!29;UBERON:0003528!2.36e-10!29;UBERON:0001893!2.36e-10!29;UBERON:0000153!6.28e-07!94 | |ontology_enrichment_uberon=UBERON:0000073!7.60e-20!75;UBERON:0001016!7.60e-20!75;UBERON:0001017!9.96e-20!73;UBERON:0005743!9.96e-20!73;UBERON:0004121!7.12e-18!102;UBERON:0000924!7.12e-18!102;UBERON:0006601!7.12e-18!102;UBERON:0001049!2.60e-17!52;UBERON:0005068!2.60e-17!52;UBERON:0006241!2.60e-17!52;UBERON:0007135!2.60e-17!52;UBERON:0002346!8.41e-17!71;UBERON:0003075!8.41e-17!71;UBERON:0007284!8.41e-17!71;UBERON:0000955!8.10e-16!50;UBERON:0006238!8.10e-16!50;UBERON:0000033!2.73e-15!63;UBERON:0002616!2.97e-15!49;UBERON:0002020!1.60e-13!34;UBERON:0003080!6.19e-13!40;UBERON:0002780!2.28e-12!39;UBERON:0001890!2.28e-12!39;UBERON:0006240!2.28e-12!39;UBERON:0003056!2.73e-12!49;UBERON:0000025!3.65e-11!114;UBERON:0004111!1.33e-10!122;UBERON:0002791!2.36e-10!29;UBERON:0003528!2.36e-10!29;UBERON:0001893!2.36e-10!29;UBERON:0000153!6.28e-07!94 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.36e-20,92;UBERON:0001016,2.98e-20,75;UBERON:0001017,4.00e-20,73;UBERON:0000073,1.68e-18,54;UBERON:0004121,6.50e-18,95;UBERON:0000924,6.50e-18,95;UBERON:0006601,6.50e-18,95;UBERON:0001049,3.18e-17,52;UBERON:0005068,3.18e-17,52;UBERON:0006241,3.18e-17,52;UBERON:0007135,3.18e-17,52;UBERON:0002346,5.03e-17,64;UBERON:0003075,5.03e-17,64;UBERON:0007284,5.03e-17,64;UBERON:0010371,1.45e-15,73;UBERON:0000955,7.85e-14,47;UBERON:0006238,7.85e-14,47;UBERON:0002020,1.26e-13,34;UBERON:0002616,2.87e-13,46;UBERON:0003080,7.17e-13,40;UBERON:0002780,2.76e-12,39;UBERON:0001890,2.76e-12,39;UBERON:0006240,2.76e-12,39;UBERON:0003056,2.90e-12,49;UBERON:0003528,2.44e-10,29;UBERON:0002791,2.44e-10,29;UBERON:0001893,2.44e-10,29;UBERON:0000025,5.59e-10,114;UBERON:0004111,1.41e-09,122 | |||
|phase1_expression=1.92178616525753,0,0,0,0,0.503637815735669,0.467225281191051,0.258246646883153,0.281577444303333,0.234064526321993,0.34243593645101,0.558405112967355,0.684802919724823,0.174840804837995,0.333109761815663,0.404950534779652,0.699561878128147,1.10411757875383,1.50825876966313,0,2.29616883407888,0.893618560807968,0.783599367416806,0,0,0,0,0.215471232685889,0.190023419456374,0.504060259519861,0,0,0.61506478758457,0,0.288851619751275,0,0.408338712524738,0.418531630736908,0.7813353445238,0,1.17646297606203,2.04913645487534,0.485510353031154,0.377690453926732,1.21652317463417,1.83546752161682,0.782391344348039,2.39827672018491,0.878744730937887,3.11087838518853,2.37976916763116,0,1.67782606057736,0,1.00828139742739,2.57259436035947,1.14613375975503,2.06268836910977,7.48570905180512,5.28990979272033,5.07065122804943,2.03306719241479,0.889294796111139,0.449949858640699,0.988866362566974,0.7104801149461,0.599200221036809,0.384218305321555,4.45865332926454,5.94026128659439,4.83747411108179,10.8547374073445,6.62605622854841,6.00204916153275,4.69642807989358,1.83843757322004,4.40463523997555,8.81042632787795,7.98753972932466,8.17694983927202,9.42322729104819,7.8137005583514,6.14202597803038,8.4414391504752,10.2374826010463,6.77645746589436,10.9626194215309,8.01517617048792,2.12033341332915,1.66257432234928,0.869593466105033,0.860423876981386,2.03991400112325,0.539703191637817,0,1.34408066129201,1.96622188184453,1.70430322578058,1.81850203222008,1.7666978725517,2.39433813620357,0,0,0,0.432982082022428,0.253359865475099,0,1.25602267690966,0,2.67195850316685,2.4287945747259,1.82679286987285,0.922461989024234,1.3565037649736,1.29347577849275,1.75933227861546,0,0.722996784599558,0,1.7794353494215,2.20841518460394,0,1.86391761218122,2.04946557908083,1.46612694769419,1.53274233125155,1.55759661857696,2.39961092397363,1.14363204365758,5.39246301857362,1.83000241127451,7.03664371832041,3.30266208365325,2.81287003063364,2.90903262383384,3.56930778749067,4.68461073711455,0.870848794270651,0.758168275301024,1.05220927943237,1.04096354370163,1.37941262660084,3.24111833649629,2.41127708537144,2.65342346690179,1.40925092313335,1.59292931751539,1.29351685369508,3.88022387279116,2.08016688184601,2.81521798662318,1.53437012699302,1.11218899690239,1.39300866608867,2.46938563689532,2.7864797354589,0.702213187313235,1.54408744268829,0.852490498186778,3.10688658803253,1.17263029990548,1.80062061461015,4.49814997611899,1.37734962223183,2.31400669331067,2.32533944750408,1.87791380979733,2.21854150497622,4.60767579757745,2.95501435342371,2.02672023864639,2.33919979880532,1.3173006917463,2.81833479396781,2.3131894342054,4.6307075570678,0,0.264450566663544,2.77274725695804,1.39342003116263,1.67527699718721,1.00841762311671,0.22237804384487,1.33157938278791,1.42358718463353,0.823494773620054,0.251335208800269,0.795825888164603,1.16978452271472,0.898819408654221,0.216138049874694,0.995706366271836,2.65535061334314,0.913988100877831,2.25415471346161,1.83286195060783,1.93952487167626,2.03393877681924,2.21327879934901,1.47610147979602,0.627994911365499,1.23397163921801,1.1858105083486,0.333690211432188,0.393117990226406,0.449724224769707,0.608580364165509,0.72353147925725,0.763877555344259,0.287696137450811,0.810676133875177,1.09824565275233,5.75072826109418,1.48856379067401,0,0.757736633841335,0.717589654087649,0.964887042726734,1.84753190166605,2.65287976478679,2.93336957595647,1.01847051465113,1.40814148973101,1.34005005953453,1.90434912708811,1.95133647857799,1.41871629695572,3.5434350343804,2.55127629851979,0.81931657357869,0.863424909329478,1.44649058581512,0,0.54390568381871,1.96705709207614,0.827810238914197,4.49541651965817,4.10240903072711,0.819674726883377,2.52470927204373,1.89304931649754,2.73307121007647,1.72338718186239,2.15071918157297,2.45078541490634,2.83076530788832,0.404810701674894,2.63030272120181,1.18586333383957,4.81981974632711,1.84522110770749,3.02711526234334,5.04949573996086,2.96946221350564,0,0.728341908464944,0.302323556964751,0.377210159511796,0.295301892880773,0.922305443831782,1.80899805217755,2.18120237686503,1.78248689192361,0.632073515871632,0,0,1.70219802876894,2.34079422240703,0.776152102696527,2.7863814554107,3.3694644392032,2.49716344642899,3.1264313914403,2.43571959291679,0.938686832254841,1.27099242518292,0.441056796109924,1.97863503529776,0.484393280087717,1.44751019827574,0.835606408021955,2.1338316966858,0.582961673259701,7.78786268444141,0.341741761595705,1.03193433981611,1.11116716421827,0.753473828018764,0.683471138605126,0.457556346413045,1.5298058699447,0.979660166265606,1.10559979043539,0,2.84702394223022,2.43983360552218,1.18805874903981,3.13632444021703,0.87345025498471,1.07891477107857,1.48776220305605,0.523511883968059,0.648074866458964,1.24267862617385,0.56369293868419,2.54178128274764,2.31641886639937,2.52786544847262,2.0665571756437,1.85851738039856,2.22978753426933,2.604087696879,1.78260885523708,0.724752362478018,2.01621004380506,0.632022241256357,1.01362607645082,1.1298205288131,0.77952493786677,1.25318686967237,1.98681354781265,1.56254084375959,0.295379054349154,1.11063094942962,1.143102099825,0.504130925684203,0.682205165178267,1.53938946624527,0.818138315270983,1.81384306892169,0.221985953374065,0.358855426437903,1.51096154727671,3.47741269257943,1.68914227906064,1.83151624267265,0.643105137237198,0,2.82375921308533,1.38097570952153,1.14579102687879,2.23409137046794,4.7955776383945,0.755393897389701,3.37511250115903,3.15224842256954,4.07828168085784,4.14208249401456,2.59468368960442,3.19219898720825,1.19513524027894,2.43106717068294,1.67690530102386,2.20612210140017,1.11123363900808,0.618105171716683,1.60459604795908,1.51618327058278,0.760437899670719,1.50901073108861,1.96647165686753,2.04880487695582,1.78049953762401,4.28664322154766,3.1288768005111,0.77163688185482,2.06042950401653,2.64958056241915,1.37147700954166,0.887379030796687,2.62279808942053,1.30811774969096,1.03520318456864,1.35383372626682,1.64635175585495,0.789209134313529,1.90125759384206,0.561142271657738,2.13543032623513,2.46261205938909,0,1.70430525304563,1.35034627686799,1.99848462350357,1.40358965067245,1.50409737833809,1.14772999241306,1.54413993383661,1.85494268496337 | |phase1_expression=1.92178616525753,0,0,0,0,0.503637815735669,0.467225281191051,0.258246646883153,0.281577444303333,0.234064526321993,0.34243593645101,0.558405112967355,0.684802919724823,0.174840804837995,0.333109761815663,0.404950534779652,0.699561878128147,1.10411757875383,1.50825876966313,0,2.29616883407888,0.893618560807968,0.783599367416806,0,0,0,0,0.215471232685889,0.190023419456374,0.504060259519861,0,0,0.61506478758457,0,0.288851619751275,0,0.408338712524738,0.418531630736908,0.7813353445238,0,1.17646297606203,2.04913645487534,0.485510353031154,0.377690453926732,1.21652317463417,1.83546752161682,0.782391344348039,2.39827672018491,0.878744730937887,3.11087838518853,2.37976916763116,0,1.67782606057736,0,1.00828139742739,2.57259436035947,1.14613375975503,2.06268836910977,7.48570905180512,5.28990979272033,5.07065122804943,2.03306719241479,0.889294796111139,0.449949858640699,0.988866362566974,0.7104801149461,0.599200221036809,0.384218305321555,4.45865332926454,5.94026128659439,4.83747411108179,10.8547374073445,6.62605622854841,6.00204916153275,4.69642807989358,1.83843757322004,4.40463523997555,8.81042632787795,7.98753972932466,8.17694983927202,9.42322729104819,7.8137005583514,6.14202597803038,8.4414391504752,10.2374826010463,6.77645746589436,10.9626194215309,8.01517617048792,2.12033341332915,1.66257432234928,0.869593466105033,0.860423876981386,2.03991400112325,0.539703191637817,0,1.34408066129201,1.96622188184453,1.70430322578058,1.81850203222008,1.7666978725517,2.39433813620357,0,0,0,0.432982082022428,0.253359865475099,0,1.25602267690966,0,2.67195850316685,2.4287945747259,1.82679286987285,0.922461989024234,1.3565037649736,1.29347577849275,1.75933227861546,0,0.722996784599558,0,1.7794353494215,2.20841518460394,0,1.86391761218122,2.04946557908083,1.46612694769419,1.53274233125155,1.55759661857696,2.39961092397363,1.14363204365758,5.39246301857362,1.83000241127451,7.03664371832041,3.30266208365325,2.81287003063364,2.90903262383384,3.56930778749067,4.68461073711455,0.870848794270651,0.758168275301024,1.05220927943237,1.04096354370163,1.37941262660084,3.24111833649629,2.41127708537144,2.65342346690179,1.40925092313335,1.59292931751539,1.29351685369508,3.88022387279116,2.08016688184601,2.81521798662318,1.53437012699302,1.11218899690239,1.39300866608867,2.46938563689532,2.7864797354589,0.702213187313235,1.54408744268829,0.852490498186778,3.10688658803253,1.17263029990548,1.80062061461015,4.49814997611899,1.37734962223183,2.31400669331067,2.32533944750408,1.87791380979733,2.21854150497622,4.60767579757745,2.95501435342371,2.02672023864639,2.33919979880532,1.3173006917463,2.81833479396781,2.3131894342054,4.6307075570678,0,0.264450566663544,2.77274725695804,1.39342003116263,1.67527699718721,1.00841762311671,0.22237804384487,1.33157938278791,1.42358718463353,0.823494773620054,0.251335208800269,0.795825888164603,1.16978452271472,0.898819408654221,0.216138049874694,0.995706366271836,2.65535061334314,0.913988100877831,2.25415471346161,1.83286195060783,1.93952487167626,2.03393877681924,2.21327879934901,1.47610147979602,0.627994911365499,1.23397163921801,1.1858105083486,0.333690211432188,0.393117990226406,0.449724224769707,0.608580364165509,0.72353147925725,0.763877555344259,0.287696137450811,0.810676133875177,1.09824565275233,5.75072826109418,1.48856379067401,0,0.757736633841335,0.717589654087649,0.964887042726734,1.84753190166605,2.65287976478679,2.93336957595647,1.01847051465113,1.40814148973101,1.34005005953453,1.90434912708811,1.95133647857799,1.41871629695572,3.5434350343804,2.55127629851979,0.81931657357869,0.863424909329478,1.44649058581512,0,0.54390568381871,1.96705709207614,0.827810238914197,4.49541651965817,4.10240903072711,0.819674726883377,2.52470927204373,1.89304931649754,2.73307121007647,1.72338718186239,2.15071918157297,2.45078541490634,2.83076530788832,0.404810701674894,2.63030272120181,1.18586333383957,4.81981974632711,1.84522110770749,3.02711526234334,5.04949573996086,2.96946221350564,0,0.728341908464944,0.302323556964751,0.377210159511796,0.295301892880773,0.922305443831782,1.80899805217755,2.18120237686503,1.78248689192361,0.632073515871632,0,0,1.70219802876894,2.34079422240703,0.776152102696527,2.7863814554107,3.3694644392032,2.49716344642899,3.1264313914403,2.43571959291679,0.938686832254841,1.27099242518292,0.441056796109924,1.97863503529776,0.484393280087717,1.44751019827574,0.835606408021955,2.1338316966858,0.582961673259701,7.78786268444141,0.341741761595705,1.03193433981611,1.11116716421827,0.753473828018764,0.683471138605126,0.457556346413045,1.5298058699447,0.979660166265606,1.10559979043539,0,2.84702394223022,2.43983360552218,1.18805874903981,3.13632444021703,0.87345025498471,1.07891477107857,1.48776220305605,0.523511883968059,0.648074866458964,1.24267862617385,0.56369293868419,2.54178128274764,2.31641886639937,2.52786544847262,2.0665571756437,1.85851738039856,2.22978753426933,2.604087696879,1.78260885523708,0.724752362478018,2.01621004380506,0.632022241256357,1.01362607645082,1.1298205288131,0.77952493786677,1.25318686967237,1.98681354781265,1.56254084375959,0.295379054349154,1.11063094942962,1.143102099825,0.504130925684203,0.682205165178267,1.53938946624527,0.818138315270983,1.81384306892169,0.221985953374065,0.358855426437903,1.51096154727671,3.47741269257943,1.68914227906064,1.83151624267265,0.643105137237198,0,2.82375921308533,1.38097570952153,1.14579102687879,2.23409137046794,4.7955776383945,0.755393897389701,3.37511250115903,3.15224842256954,4.07828168085784,4.14208249401456,2.59468368960442,3.19219898720825,1.19513524027894,2.43106717068294,1.67690530102386,2.20612210140017,1.11123363900808,0.618105171716683,1.60459604795908,1.51618327058278,0.760437899670719,1.50901073108861,1.96647165686753,2.04880487695582,1.78049953762401,4.28664322154766,3.1288768005111,0.77163688185482,2.06042950401653,2.64958056241915,1.37147700954166,0.887379030796687,2.62279808942053,1.30811774969096,1.03520318456864,1.35383372626682,1.64635175585495,0.789209134313529,1.90125759384206,0.561142271657738,2.13543032623513,2.46261205938909,0,1.70430525304563,1.35034627686799,1.99848462350357,1.40358965067245,1.50409737833809,1.14772999241306,1.54413993383661,1.85494268496337 | ||
|short_description=p7@Prkacb | |short_description=p7@Prkacb | ||
}} | }} |
Latest revision as of 18:58, 1 October 2015
Short description: | p7@Prkacb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Prkacb_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000102515_5end |
EntrezGene: | Prkacb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.37e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.37e-15 | 23 |
neuron | 1.03e-14 | 33 |
neuronal stem cell | 1.03e-14 | 33 |
neuroblast | 1.03e-14 | 33 |
electrically signaling cell | 1.03e-14 | 33 |
electrically responsive cell | 3.11e-13 | 39 |
electrically active cell | 3.11e-13 | 39 |
ectodermal cell | 1.64e-11 | 44 |
neurectodermal cell | 1.64e-11 | 44 |
neural cell | 2.85e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.36e-20 | 92 |
nervous system | 2.98e-20 | 75 |
central nervous system | 4.00e-20 | 73 |
regional part of nervous system | 1.68e-18 | 54 |
ectoderm-derived structure | 6.50e-18 | 95 |
ectoderm | 6.50e-18 | 95 |
presumptive ectoderm | 6.50e-18 | 95 |
neural tube | 3.18e-17 | 52 |
neural rod | 3.18e-17 | 52 |
future spinal cord | 3.18e-17 | 52 |
neural keel | 3.18e-17 | 52 |
neurectoderm | 5.03e-17 | 64 |
neural plate | 5.03e-17 | 64 |
presumptive neural plate | 5.03e-17 | 64 |
ecto-epithelium | 1.45e-15 | 73 |
brain | 7.85e-14 | 47 |
future brain | 7.85e-14 | 47 |
gray matter | 1.26e-13 | 34 |
regional part of brain | 2.87e-13 | 46 |
anterior neural tube | 7.17e-13 | 40 |
regional part of forebrain | 2.76e-12 | 39 |
forebrain | 2.76e-12 | 39 |
future forebrain | 2.76e-12 | 39 |
pre-chordal neural plate | 2.90e-12 | 49 |
brain grey matter | 2.44e-10 | 29 |
regional part of telencephalon | 2.44e-10 | 29 |
telencephalon | 2.44e-10 | 29 |
tube | 5.59e-10 | 114 |
anatomical conduit | 1.41e-09 | 122 |