FFCP PHASE1:Hg19::chr2:37458776..37458862,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:37458776..37458862,+
|short_description=p1@C2orf56
|description=CAGE_peak_1_at_C2orf56_5end
|association_with_transcript=0bp_to_ENST00000002125,ENST0000033...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55471 | |EntrezGene=55471 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28816 | |HGNC=28816 | ||
|TSSclassifier=strong | |||
|UniProt=Q7L592,C9J236 | |UniProt=Q7L592,C9J236 | ||
|association_with_transcript=0bp_to_ENST00000002125,ENST00000336237,ENST00000431821,ENST00000474154_5end | |||
|cluster_id=chr2:37458776..37458862,+ | |||
|description=CAGE_peak_1_at_C2orf56_5end | |||
|id=chr2:37458776..37458862,+ | |||
|ontology_enrichment_celltype=CL:0000542!5.89e-10!53;CL:0000051!5.89e-10!53;CL:0000838!1.13e-09!52;CL:0000791!6.01e-07!18;CL:0000789!6.01e-07!18;CL:0002420!6.01e-07!18;CL:0002419!6.01e-07!18;CL:0000790!6.01e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.75e-07;18!CL:0000789;6.75e-07;18!CL:0002419;6.75e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,5.89e-10,53;CL:0000051,5.89e-10,53;CL:0000838,1.13e-09,52;CL:0000791,6.01e-07,18;CL:0000789,6.01e-07,18;CL:0002420,6.01e-07,18;CL:0002419,6.01e-07,18;CL:0000790,6.01e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;6.75e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!6.57e-15!41;UBERON:0001890!6.57e-15!41;UBERON:0006240!6.57e-15!41;UBERON:0001049!2.67e-14!57;UBERON:0005068!2.67e-14!57;UBERON:0006241!2.67e-14!57;UBERON:0007135!2.67e-14!57;UBERON:0003080!3.14e-14!42;UBERON:0005743!2.71e-13!86;UBERON:0002020!3.96e-13!34;UBERON:0003528!3.96e-13!34;UBERON:0001017!4.82e-13!82;UBERON:0001893!5.18e-13!34;UBERON:0001869!6.09e-13!32;UBERON:0002616!8.25e-13!59;UBERON:0002791!1.51e-12!33;UBERON:0000955!6.91e-12!69;UBERON:0006238!6.91e-12!69;UBERON:0000073!1.20e-11!94;UBERON:0001016!1.20e-11!94;UBERON:0002619!1.11e-10!22;UBERON:0000956!1.59e-10!25;UBERON:0000203!1.59e-10!25;UBERON:0001950!3.90e-10!20;UBERON:0003056!1.05e-08!61;UBERON:0003075!1.96e-08!86;UBERON:0007284!1.96e-08!86;UBERON:0002346!8.76e-08!90;UBERON:0007023!7.56e-07!115;UBERON:0000153!9.00e-07!129;UBERON:0007811!9.00e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;6.60e-12;32!UBERON:0002791;1.00e-11;32!UBERON:0003528;1.22e-11;34!UBERON:0002020;1.22e-11;34!UBERON:0001893;1.66e-11;34!UBERON:0002780;8.71e-11;41!UBERON:0001890;8.71e-11;41!UBERON:0002619;9.25e-11;22!UBERON:0000956;1.22e-10;25!UBERON:0000203;1.22e-10;25!UBERON:0001950;3.60e-10;20!UBERON:0000073;1.31e-09;53!UBERON:0002616;1.31e-09;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.53e-15,53;UBERON:0002616,2.53e-15,53;UBERON:0002780,6.57e-15,41;UBERON:0001890,6.57e-15,41;UBERON:0003080,6.57e-15,41;UBERON:0006240,6.57e-15,41;UBERON:0001049,7.53e-15,56;UBERON:0005068,7.53e-15,56;UBERON:0006241,7.53e-15,56;UBERON:0007135,7.53e-15,56;UBERON:0001017,1.93e-13,81;UBERON:0003528,3.96e-13,34;UBERON:0002020,3.96e-13,34;UBERON:0001893,5.18e-13,34;UBERON:0001869,6.09e-13,32;UBERON:0002791,1.15e-12,32;UBERON:0000955,2.66e-12,68;UBERON:0006238,2.66e-12,68;UBERON:0001016,1.06e-11,89;UBERON:0002619,1.11e-10,22;UBERON:0000956,1.59e-10,25;UBERON:0000203,1.59e-10,25;UBERON:0001950,3.90e-10,20;UBERON:0003056,1.59e-08,61;UBERON:0003075,1.80e-08,82;UBERON:0007284,1.80e-08,82;UBERON:0002346,8.51e-08,86 | |||
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| ||
|short_description=p1@C2orf56 | |||
}} | }} |
Latest revision as of 02:01, 17 September 2015
Short description: | p1@C2orf56 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_C2orf56_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000002125, ENST00000336237, ENST00000431821, ENST00000474154_5end |
EntrezGene: | C2orf56 |
HGNC: | 28816 |
UniProt: | Q7L592C9J236 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 5.89e-10 | 53 |
common lymphoid progenitor | 5.89e-10 | 53 |
lymphoid lineage restricted progenitor cell | 1.13e-09 | 52 |
mature alpha-beta T cell | 6.01e-07 | 18 |
alpha-beta T cell | 6.01e-07 | 18 |
immature T cell | 6.01e-07 | 18 |
mature T cell | 6.01e-07 | 18 |
immature alpha-beta T cell | 6.01e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.53e-15 | 53 |
regional part of brain | 2.53e-15 | 53 |
regional part of forebrain | 6.57e-15 | 41 |
forebrain | 6.57e-15 | 41 |
anterior neural tube | 6.57e-15 | 41 |
future forebrain | 6.57e-15 | 41 |
neural tube | 7.53e-15 | 56 |
neural rod | 7.53e-15 | 56 |
future spinal cord | 7.53e-15 | 56 |
neural keel | 7.53e-15 | 56 |
central nervous system | 1.93e-13 | 81 |
brain grey matter | 3.96e-13 | 34 |
gray matter | 3.96e-13 | 34 |
telencephalon | 5.18e-13 | 34 |
cerebral hemisphere | 6.09e-13 | 32 |
regional part of telencephalon | 1.15e-12 | 32 |
brain | 2.66e-12 | 68 |
future brain | 2.66e-12 | 68 |
nervous system | 1.06e-11 | 89 |
regional part of cerebral cortex | 1.11e-10 | 22 |
cerebral cortex | 1.59e-10 | 25 |
pallium | 1.59e-10 | 25 |
neocortex | 3.90e-10 | 20 |
pre-chordal neural plate | 1.59e-08 | 61 |
neural plate | 1.80e-08 | 82 |
presumptive neural plate | 1.80e-08 | 82 |
neurectoderm | 8.51e-08 | 86 |