FFCP PHASE1:Hg19::chr3:110790715..110790728,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:110790715..110790728,+
|short_description=p2@PVRL3
|description=CAGE_peak_2_at_PVRL3_5end
|association_with_transcript=0bp_to_ENST00000319792_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25945 | |EntrezGene=25945 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17664 | |HGNC=17664 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000319792_5end | |||
|cluster_id=chr3:110790715..110790728,+ | |||
|coexpression_cluster_id=C4262 | |||
|description=CAGE_peak_2_at_PVRL3_5end | |||
|id=chr3:110790715..110790728,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.67e-14!180;CL:0000057!1.27e-12!75;CL:0002620!4.70e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.33e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.05e-11,76;CL:0002620,1.16e-09,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.57e-14!365;UBERON:0005743!7.28e-13!86;UBERON:0001017!3.38e-12!82;UBERON:0000481!4.49e-12!347;UBERON:0000073!6.80e-12!94;UBERON:0001016!6.80e-12!94;UBERON:0000956!3.17e-11!25;UBERON:0000203!3.17e-11!25;UBERON:0000468!7.83e-11!659;UBERON:0001893!8.87e-11!34;UBERON:0003056!1.37e-10!61;UBERON:0001869!2.21e-10!32;UBERON:0002780!2.23e-10!41;UBERON:0001890!2.23e-10!41;UBERON:0006240!2.23e-10!41;UBERON:0000033!2.45e-10!123;UBERON:0002791!2.84e-10!33;UBERON:0002020!3.09e-10!34;UBERON:0003528!3.09e-10!34;UBERON:0004121!4.01e-10!169;UBERON:0000153!5.75e-10!129;UBERON:0007811!5.75e-10!129;UBERON:0000955!5.77e-10!69;UBERON:0006238!5.77e-10!69;UBERON:0002619!7.23e-10!22;UBERON:0003080!1.04e-09!42;UBERON:0002616!1.28e-09!59;UBERON:0001049!1.38e-09!57;UBERON:0005068!1.38e-09!57;UBERON:0006241!1.38e-09!57;UBERON:0007135!1.38e-09!57;UBERON:0000477!2.12e-09!286;UBERON:0001950!3.15e-09!20;UBERON:0000924!3.90e-09!173;UBERON:0006601!3.90e-09!173;UBERON:0000467!5.13e-09!625;UBERON:0000480!8.04e-09!626;UBERON:0003075!1.17e-08!86;UBERON:0007284!1.17e-08!86;UBERON:0000119!1.76e-07!312;UBERON:0002346!2.15e-07!90;UBERON:0000483!2.29e-07!309;UBERON:0000062!9.19e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.02e-15;25!UBERON:0000203;3.02e-15;25!UBERON:0002619;4.61e-13;22!UBERON:0001950;3.52e-12;20!UBERON:0001869;1.15e-11;32!UBERON:0001893;4.76e-11;34!UBERON:0002791;2.26e-10;32!UBERON:0003528;4.44e-10;34!UBERON:0002020;4.44e-10;34!UBERON:0002780;7.22e-09;41!UBERON:0001890;7.22e-09;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,8.75e-16,25;UBERON:0000203,8.75e-16,25;UBERON:0003056,7.15e-15,61;UBERON:0010314,7.76e-14,132;UBERON:0002619,1.17e-13,22;UBERON:0001869,3.73e-13,32;UBERON:0001893,4.28e-13,34;UBERON:0003075,5.95e-13,82;UBERON:0007284,5.95e-13,82;UBERON:0001950,1.19e-12,20;UBERON:0002780,3.39e-12,41;UBERON:0001890,3.39e-12,41;UBERON:0003080,3.39e-12,41;UBERON:0006240,3.39e-12,41;UBERON:0002791,9.03e-12,32;UBERON:0002346,1.09e-11,86;UBERON:0003528,1.57e-11,34;UBERON:0002020,1.57e-11,34;UBERON:0001017,2.17e-11,81;UBERON:0001049,3.98e-11,56;UBERON:0005068,3.98e-11,56;UBERON:0006241,3.98e-11,56;UBERON:0007135,3.98e-11,56;UBERON:0000955,7.85e-11,68;UBERON:0006238,7.85e-11,68;UBERON:0004121,1.60e-10,171;UBERON:0000924,1.60e-10,171;UBERON:0006601,1.60e-10,171;UBERON:0000073,1.77e-10,53;UBERON:0002616,1.77e-10,53;UBERON:0001016,9.24e-10,89;UBERON:0010371,2.46e-09,104 | |||
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|phase1_expression=2.90685406832891,1.07050261945492,1.26858963686374,6.00439790118782,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0.245733936501509,0,0.873765488520689,0.263766978228454,0.74259811776028,0.994192127183747,0,1.20538905604795,0.730310090387373,0.975865597581014,0.61560529038394,0.204000691244253,0,2.0036519099174,2.05311637609326,2.88748071068046,0,0,0,0,0.383829398097213,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0.822405995998037,0,0,0,3.89653456815823,0,0,0,0.541607727530031,0,0,0.328875809207352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604820229674197,1.06976078313403,0.434473211648397,4.87613732627923,0.670700859703636,0.767175371061182,1.44575660953827,2.00535164254356,1.59331170856906,1.5905718941022,0.486634870302636,20.2304508731105,17.7383517970051,18.6209745669427,1.17881167947941,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0.694281003215189,0.56530794192401,0.419499436209906,0.275118041940067,0.208994966536811,1.03366703667732,1.06729878806013,0,0.805658634218294,0.760272105718513,0.976248230192678,0.735326160691737,0,0.535798369704479,0.44905874525234,0.450445921933289,1.53316637465883,0,0,0,0,0,1.98788780678127,0.633152558322899,0.926864265692532,1.72101972449288,0,0,0,1.48000529050296,2.17847724779836,0.942974704487816,0.163461903113459,0.454072282934794,0.576175924479999,1.17160715916898,1.87296046098192,1.1409436430889,1.49448680551801,0.23486899728753,0.971237666208789,0.421352420106746,3.67477508258808,0.737005903870608,1.54988671763648,17.8200428592308,12.1160795346493,1.82032272387605,0,1.17835279767846,0.875829639103749,4.43302584774693,7.46261955497424,1.83892677479412,5.10809400282429,0.794025282120147,6.81680615617675,2.77624605464138,1.69545520927649,11.4034616512073,3.60683852334536,5.92573242104947,4.83903826462134,6.91982962189192,2.92311015483596,5.80597680761463,2.30124746605748,0.484938170456436,8.87523981291536,6.34738218834134,1.52604533079439,0,0.272746120590835,0,0.121973706129595,0.795178609928912,0.580969714347592,0.932949495138334,0.756962552626885,0.72995471815166,20.3384392028761,9.00537313470039,0,1.39310378409594,0.721879481669586,0.591534000199219,1.01150814046861,0.723033089650446,0.441175890929576,1.52515610864684,0.949082476444386,0.404493924480493,0.392442930250692,0.38474715694639,0,1.40241773803446,0.4115740113314,1.47008711385542,0,0.982827216677626,1.18157981336281,2.20731549707325,0.983907508344908,4.63233087806019,0,0,0,0,0.325808305310325,0,5.77325368101093,10.3178060427818,9.39269553886573,0.288732895522148,0.462985512576611,0.190254152234598,0,0,0,0,0.297262324577456,0,0,0.425325291727159,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0.126995788584338,0,0,0,0.308482478109971,0,0,0.897048674762886,0,1.7601188597028,1.03417372606222,0,1.690605505112,3.98907174877306,3.12022310734098,0.514414748524284,1.41849132023278,0.532844358032199,5.14720777169331,0,0,0.65147236858747,1.77695974371273,1.58390374586686,0,0,0.399891964728228,0,0,0,5.5113716763064,10.3375742250703,0,3.61953266668948,1.64381058040307,3.04403637507822,0.112085143993527,0.394061520403854,0.862510299438069,0.128343036279748,2.28685161800217,1.30139853857622,3.09315525111078,0.335032530668698,0.637938751653163,0,0,0,0.858840442033979,1.00034104211935,0.271265023699736,0.831883446123229,1.60586089917446,2.20783381047509,0.702848489956279,0.601892199455438,0,0,0.664225598535437,0.553107505625109,2.17209036170207,0.391602314925481,0.343143423810856,0.206768026122887,0.215714200818617,0.74709290462411,1.21251028578504,1.66435439510497,0.604780586659361,1.98486246255021,1.53461973288062,1.96462066103151,3.84417447767103,3.07024349440022,1.28683136914886,0,0.616838775210622,0.355123450626254,0.821271560138091,1.03850885836724,1.27831416305955,0.846016147141356,0.601519410909855,0,1.14814448164607,2.00300284807389,2.09799063935079,0,0.15403067420883,0,0,0.105551628892876,0,0.170093705276516,0.863663664408557,0,0.270946437543853,0,0.254876273045038,0,0.447749509444357,0,0,0.512900250232778,0.656029291399411,0.976135183992909,5.564214628977,0.640986253728404,0.495056999523528,0,0,0,0.386682873168488,0.770243085573222,0.307007349452259,1.24052915236078,0.322260734604821,0.290033387828457,1.36362603865761,2.40386496246191,0.165284915360978,0.192190067365106,0.382838137483752,0,0.929691098594572,7.870308670766,0.6970372701606,0.616067160352178,0.532306030317022,0,0.18532421910392,1.14499909393593,1.86079184679834,1.2655176988749,2.85945290885737,0,0,0.636406495851874,0,1.07923474549989,0.823611089208164,1.17812402345686,0.202182481573316,1.58510321173008,0,0,1.21856744815642,0,2.8664981395677,1.1312434556297,0,0,0.66343897524122,0.876901770507525,0,0.655894752046633,0.608731130888112,0.92947049429925,0.281695602532241,1.72093622644862,1.8667317792493,0.35667105148125,0.35476106407059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| ||
|short_description=p2@PVRL3 | |||
}} | }} |
Latest revision as of 12:20, 19 September 2015
Short description: | p2@PVRL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PVRL3_5end |
Coexpression cluster: | C4262_placenta_Ciliary_Fibroblast_Lens_Hair_normal_Smooth |
Association with transcript: | 0bp_to_ENST00000319792_5end |
EntrezGene: | PVRL3 |
HGNC: | 17664 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.05e-11 | 76 |
skin fibroblast | 1.16e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 8.75e-16 | 25 |
pallium | 8.75e-16 | 25 |
pre-chordal neural plate | 7.15e-15 | 61 |
structure with developmental contribution from neural crest | 7.76e-14 | 132 |
regional part of cerebral cortex | 1.17e-13 | 22 |
cerebral hemisphere | 3.73e-13 | 32 |
telencephalon | 4.28e-13 | 34 |
neural plate | 5.95e-13 | 82 |
presumptive neural plate | 5.95e-13 | 82 |
neocortex | 1.19e-12 | 20 |
regional part of forebrain | 3.39e-12 | 41 |
forebrain | 3.39e-12 | 41 |
anterior neural tube | 3.39e-12 | 41 |
future forebrain | 3.39e-12 | 41 |
regional part of telencephalon | 9.03e-12 | 32 |
neurectoderm | 1.09e-11 | 86 |
brain grey matter | 1.57e-11 | 34 |
gray matter | 1.57e-11 | 34 |
central nervous system | 2.17e-11 | 81 |
neural tube | 3.98e-11 | 56 |
neural rod | 3.98e-11 | 56 |
future spinal cord | 3.98e-11 | 56 |
neural keel | 3.98e-11 | 56 |
brain | 7.85e-11 | 68 |
future brain | 7.85e-11 | 68 |
ectoderm-derived structure | 1.60e-10 | 171 |
ectoderm | 1.60e-10 | 171 |
presumptive ectoderm | 1.60e-10 | 171 |
regional part of nervous system | 1.77e-10 | 53 |
regional part of brain | 1.77e-10 | 53 |
nervous system | 9.24e-10 | 89 |
ecto-epithelium | 2.46e-09 | 104 |