FFCP PHASE1:Hg19::chr3:16327887..16327901,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:16327887..16327901,+
|short_description=p3@OXNAD1
|description=CAGE_peak_3_at_OXNAD1_5end
|association_with_transcript=27bp_to_AL832787_5end
|EntrezGene=9...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=92106 | |EntrezGene=92106 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=25128 | |HGNC=25128 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_AL832787_5end | |||
|cluster_id=chr3:16327887..16327901,+ | |||
|coexpression_cluster_id=C23 | |||
|description=CAGE_peak_3_at_OXNAD1_5end | |||
|id=chr3:16327887..16327901,+ | |||
|ontology_enrichment_celltype=CL:0000084!8.44e-26!25;CL:0000827!8.44e-26!25;CL:0000791!2.23e-24!18;CL:0000789!2.23e-24!18;CL:0002420!2.23e-24!18;CL:0002419!2.23e-24!18;CL:0000790!2.23e-24!18;CL:0000738!2.27e-24!140;CL:0000838!2.95e-21!52;CL:0000542!1.25e-20!53;CL:0000051!1.25e-20!53;CL:0002087!7.14e-17!119;CL:0000037!1.25e-16!172;CL:0000566!1.25e-16!172;CL:0000625!2.74e-15!11;CL:0002031!6.62e-15!124;CL:0000988!1.32e-14!182;CL:0002032!5.69e-14!165;CL:0000837!5.69e-14!165;CL:0000624!1.27e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.25e-46;18!CL:0000789;3.25e-46;18!CL:0002419;3.25e-46;18!CL:0000084;1.74e-43;25!CL:0000625;2.40e-28;11!CL:0000624;2.83e-17;6!CL:0000542;1.82e-14;53!CL:0000094;7.40e-11;8!CL:0000226;2.10e-09;3!CL:0000842;2.10e-09;3!CL:0000898;2.48e-09;3!CL:0000623;2.92e-09;3!CL:0000767;1.55e-08;3!CL:0000081;1.06e-07;11!CL:0000815;9.69e-07;2!CL:0000792;9.69e-07;2!CL:0002677;9.69e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.54e-46,18;CL:0000789,3.54e-46,18;CL:0002420,3.54e-46,18;CL:0002419,3.54e-46,18;CL:0000790,3.54e-46,18;CL:0000084,2.15e-43,25;CL:0000827,2.15e-43,25;CL:0000625,2.41e-28,11;CL:0000838,3.32e-26,52;CL:0000542,1.42e-25,53;CL:0000051,1.42e-25,53;CL:0000738,1.98e-24,136;CL:0000037,1.28e-17,168;CL:0000624,2.87e-17,6;CL:0000988,3.70e-16,177;CL:0002087,3.16e-15,115;CL:0002032,1.95e-13,161;CL:0000837,1.95e-13,161;CL:0002031,6.77e-11,120;CL:0000094,7.01e-11,8;CL:0000226,2.19e-09,3;CL:0000842,2.19e-09,3;CL:0000898,2.51e-09,3;CL:0000623,2.96e-09,3;CL:0000825,2.96e-09,3;CL:0000767,1.45e-08,3;CL:0000081,1.02e-07,11;CL:0000815,9.83e-07,2;CL:0000792,9.83e-07,2;CL:0002677,9.83e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.25e-46;18!CL:0000051;1.82e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.38e-15!115;UBERON:0000178!2.19e-11!15;UBERON:0000179!2.19e-11!15;UBERON:0000463!2.19e-11!15;UBERON:0002390!6.73e-08!102;UBERON:0003061!6.73e-08!102;UBERON:0002193!1.71e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.53e-22;15!UBERON:0000179;6.53e-22;15!UBERON:0000463;6.53e-22;15!UBERON:0002390;1.24e-12;32!UBERON:0002193;1.45e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.11e-22,15;UBERON:0000179,6.11e-22,15;UBERON:0000463,6.11e-22,15;UBERON:0002370,2.93e-10,4;UBERON:0005058,2.93e-10,4;UBERON:0009113,2.93e-10,4;UBERON:0003295,2.93e-10,4;UBERON:0005562,2.93e-10,4;UBERON:0004177,1.22e-08,7;UBERON:0005057,1.22e-08,7;UBERON:0003351,7.69e-07,6 | |||
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| ||
|short_description=p3@OXNAD1 | |||
}} | }} |
Latest revision as of 12:03, 16 September 2015
Short description: | p3@OXNAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_OXNAD1_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | 27bp_to_AL832787_5end |
EntrezGene: | OXNAD1 |
HGNC: | 25128 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.54e-46 | 18 |
alpha-beta T cell | 3.54e-46 | 18 |
immature T cell | 3.54e-46 | 18 |
mature T cell | 3.54e-46 | 18 |
immature alpha-beta T cell | 3.54e-46 | 18 |
T cell | 2.15e-43 | 25 |
pro-T cell | 2.15e-43 | 25 |
CD8-positive, alpha-beta T cell | 2.41e-28 | 11 |
lymphoid lineage restricted progenitor cell | 3.32e-26 | 52 |
lymphocyte | 1.42e-25 | 53 |
common lymphoid progenitor | 1.42e-25 | 53 |
leukocyte | 1.98e-24 | 136 |
hematopoietic stem cell | 1.28e-17 | 168 |
CD4-positive, alpha-beta T cell | 2.87e-17 | 6 |
hematopoietic cell | 3.70e-16 | 177 |
nongranular leukocyte | 3.16e-15 | 115 |
hematopoietic oligopotent progenitor cell | 1.95e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.95e-13 | 161 |
hematopoietic lineage restricted progenitor cell | 6.77e-11 | 120 |
granulocyte | 7.01e-11 | 8 |
single nucleate cell | 2.19e-09 | 3 |
mononuclear cell | 2.19e-09 | 3 |
naive T cell | 2.51e-09 | 3 |
natural killer cell | 2.96e-09 | 3 |
pro-NK cell | 2.96e-09 | 3 |
basophil | 1.45e-08 | 3 |
blood cell | 1.02e-07 | 11 |
regulatory T cell | 9.83e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 9.83e-07 | 2 |
naive regulatory T cell | 9.83e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 6.11e-22 | 15 |
haemolymphatic fluid | 6.11e-22 | 15 |
organism substance | 6.11e-22 | 15 |
thymus | 2.93e-10 | 4 |
hemolymphoid system gland | 2.93e-10 | 4 |
thymic region | 2.93e-10 | 4 |
pharyngeal gland | 2.93e-10 | 4 |
thymus primordium | 2.93e-10 | 4 |
hemopoietic organ | 1.22e-08 | 7 |
immune organ | 1.22e-08 | 7 |
pharyngeal epithelium | 7.69e-07 | 6 |