FFCP PHASE1:Mm9::chr2:180701923..180701994,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=228998 | |EntrezGene=228998 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q9EPJ9,Q3TGS9,Q6PB94,Q05DE0 | |UniProt=Q9EPJ9,Q3TGS9,Q6PB94,Q05DE0 | ||
|association_with_transcript=0bp_to_ENSMUST00000029092,ENSMUST00000098981,ENSMUST00000108860,ENSMUST00000108861,ENSMUST00000108862,ENSMUST00000132627,ENSMUST00000136590,ENSMUST00000145629,NM_001177707,NM_001177708,NM_001177709,NM_001177710,NM_145760,uc008okj.2,uc008okk.2,uc008okl.2,uc008okm.2,uc008okn.2_5end | |association_with_transcript=0bp_to_ENSMUST00000029092,ENSMUST00000098981,ENSMUST00000108860,ENSMUST00000108861,ENSMUST00000108862,ENSMUST00000132627,ENSMUST00000136590,ENSMUST00000145629,NM_001177707,NM_001177708,NM_001177709,NM_001177710,NM_145760,uc008okj.2,uc008okk.2,uc008okl.2,uc008okm.2,uc008okn.2_5end | ||
|cluster_id=chr2:180701923..180701994,+ | |||
|description=CAGE_peak_1_at_Arfgap1_5end | |description=CAGE_peak_1_at_Arfgap1_5end | ||
|id=chr2:180701923..180701994,+ | |id=chr2:180701923..180701994,+ | ||
Latest revision as of 07:50, 26 September 2015
| Short description: | p1@Arfgap1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Arfgap1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENSMUST00000029092, ENSMUST00000098981, ENSMUST00000108860, ENSMUST00000108861, ENSMUST00000108862, ENSMUST00000132627, ENSMUST00000136590, ENSMUST00000145629, NM_001177707, NM_001177708, NM_001177709, NM_001177710, NM_145760, uc008okj.2, uc008okk.2, uc008okl.2, uc008okm.2, uc008okn.2_5end |
| EntrezGene: | Arfgap1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 3.38e-11 | 73 |
| regional part of nervous system | 1.34e-10 | 54 |
| nervous system | 3.90e-10 | 75 |
| neural tube | 2.56e-09 | 52 |
| neural rod | 2.56e-09 | 52 |
| future spinal cord | 2.56e-09 | 52 |
| neural keel | 2.56e-09 | 52 |
| brain | 3.78e-08 | 47 |
| future brain | 3.78e-08 | 47 |
| ectoderm-derived structure | 4.05e-08 | 95 |
| ectoderm | 4.05e-08 | 95 |
| presumptive ectoderm | 4.05e-08 | 95 |
| occipital lobe | 4.92e-08 | 10 |
| visual cortex | 4.92e-08 | 10 |
| neocortex | 4.92e-08 | 10 |
| regional part of brain | 5.31e-08 | 46 |
| gray matter | 5.74e-08 | 34 |
| anterior neural tube | 8.36e-08 | 40 |
| regional part of forebrain | 1.23e-07 | 39 |
| forebrain | 1.23e-07 | 39 |
| future forebrain | 1.23e-07 | 39 |
| neurectoderm | 3.36e-07 | 64 |
| neural plate | 3.36e-07 | 64 |
| presumptive neural plate | 3.36e-07 | 64 |
