FFCP PHASE1:Hg19::chr5:43313543..43313554,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:43313543..43313554,-
|short_description=p2@HMGCS1
|description=CAGE_peak_2_at_HMGCS1_5end
|association_with_transcript=20bp_to_ENST00000507004_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3157 | |EntrezGene=3157 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5007 | |HGNC=5007 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=20bp_to_ENST00000507004_5end | |||
|cluster_id=chr5:43313543..43313554,- | |||
|description=CAGE_peak_2_at_HMGCS1_5end | |||
|id=chr5:43313543..43313554,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.00e-14!235;DOID:14566!9.46e-14!239;DOID:305!5.84e-10!106;DOID:0050686!3.18e-08!137;DOID:0050687!8.29e-08!143;DOID:2531!2.81e-07!51;DOID:0060083!2.81e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.16e-14,235;DOID:14566,1.32e-13,239;DOID:305,8.21e-10,106;DOID:0050686,3.23e-08,137;DOID:0050687,1.01e-07,143;DOID:2531,2.04e-07,51;DOID:0060083,2.04e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000073!7.44e-14!94;UBERON:0001016!7.44e-14!94;UBERON:0005743!6.81e-13!86;UBERON:0001017!7.12e-13!82;UBERON:0000956!4.34e-11!25;UBERON:0000203!4.34e-11!25;UBERON:0001869!6.79e-11!32;UBERON:0002780!1.64e-10!41;UBERON:0001890!1.64e-10!41;UBERON:0006240!1.64e-10!41;UBERON:0001893!1.85e-10!34;UBERON:0003080!4.85e-10!42;UBERON:0002791!6.89e-10!33;UBERON:0002020!8.27e-10!34;UBERON:0003528!8.27e-10!34;UBERON:0002619!1.50e-09!22;UBERON:0000955!3.18e-09!69;UBERON:0006238!3.18e-09!69;UBERON:0001950!3.28e-09!20;UBERON:0001049!3.39e-09!57;UBERON:0005068!3.39e-09!57;UBERON:0006241!3.39e-09!57;UBERON:0007135!3.39e-09!57;UBERON:0004121!1.49e-08!169;UBERON:0002616!2.02e-08!59;UBERON:0000924!2.51e-08!173;UBERON:0006601!2.51e-08!173;UBERON:0000033!1.17e-07!123;UBERON:0003056!1.83e-07!61;UBERON:0000153!3.26e-07!129;UBERON:0007811!3.26e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;4.43e-11;25!UBERON:0000203;4.43e-11;25!UBERON:0001869;8.00e-10;32!UBERON:0002619;1.81e-09;22!UBERON:0001950;3.59e-09;20!UBERON:0001893;3.95e-09;34!UBERON:0002791;6.76e-09;32!UBERON:0003528;7.46e-09;34!UBERON:0002020;7.46e-09;34!UBERON:0002780;5.72e-07;41!UBERON:0001890;5.72e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.55e-14,89;UBERON:0001017,3.89e-13,81;UBERON:0011216,9.04e-12,223;UBERON:0000956,3.72e-11,25;UBERON:0000203,3.72e-11,25;UBERON:0001869,8.20e-11,32;UBERON:0002780,1.91e-10,41;UBERON:0001890,1.91e-10,41;UBERON:0003080,1.91e-10,41;UBERON:0006240,1.91e-10,41;UBERON:0001893,2.22e-10,34;UBERON:0002791,7.60e-10,32;UBERON:0003528,9.87e-10,34;UBERON:0002020,9.87e-10,34;UBERON:0002619,1.32e-09,22;UBERON:0001049,1.56e-09,56;UBERON:0005068,1.56e-09,56;UBERON:0006241,1.56e-09,56;UBERON:0007135,1.56e-09,56;UBERON:0000955,1.60e-09,68;UBERON:0006238,1.60e-09,68;UBERON:0000073,2.72e-09,53;UBERON:0002616,2.72e-09,53;UBERON:0001950,2.90e-09,20;UBERON:0004121,8.76e-08,171;UBERON:0000924,8.76e-08,171;UBERON:0006601,8.76e-08,171;UBERON:0003056,1.21e-07,61 | |||
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| ||
|short_description=p2@HMGCS1 | |||
}} | }} |
Latest revision as of 00:34, 18 September 2015
Short description: | p2@HMGCS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMGCS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_ENST00000507004_5end |
EntrezGene: | HMGCS1 |
HGNC: | 5007 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 3.55e-14 | 89 |
central nervous system | 3.89e-13 | 81 |
organ system subdivision | 9.04e-12 | 223 |
cerebral cortex | 3.72e-11 | 25 |
pallium | 3.72e-11 | 25 |
cerebral hemisphere | 8.20e-11 | 32 |
regional part of forebrain | 1.91e-10 | 41 |
forebrain | 1.91e-10 | 41 |
anterior neural tube | 1.91e-10 | 41 |
future forebrain | 1.91e-10 | 41 |
telencephalon | 2.22e-10 | 34 |
regional part of telencephalon | 7.60e-10 | 32 |
brain grey matter | 9.87e-10 | 34 |
gray matter | 9.87e-10 | 34 |
regional part of cerebral cortex | 1.32e-09 | 22 |
neural tube | 1.56e-09 | 56 |
neural rod | 1.56e-09 | 56 |
future spinal cord | 1.56e-09 | 56 |
neural keel | 1.56e-09 | 56 |
brain | 1.60e-09 | 68 |
future brain | 1.60e-09 | 68 |
regional part of nervous system | 2.72e-09 | 53 |
regional part of brain | 2.72e-09 | 53 |
neocortex | 2.90e-09 | 20 |
ectoderm-derived structure | 8.76e-08 | 171 |
ectoderm | 8.76e-08 | 171 |
presumptive ectoderm | 8.76e-08 | 171 |
pre-chordal neural plate | 1.21e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.16e-14 | 235 |
disease of cellular proliferation | 1.32e-13 | 239 |
carcinoma | 8.21e-10 | 106 |
organ system cancer | 3.23e-08 | 137 |
cell type cancer | 1.01e-07 | 143 |
hematologic cancer | 2.04e-07 | 51 |
immune system cancer | 2.04e-07 | 51 |