FFCP PHASE1:Hg19::chr5:43313574..43313585,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:43313574..43313585,-
|short_description=p3@HMGCS1
|description=CAGE_peak_3_at_HMGCS1_5end
|association_with_transcript=0bp_to_ENST00000507004,ENST000005072...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3157 | |EntrezGene=3157 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5007 | |HGNC=5007 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000507004,ENST00000507293_5end | |||
|cluster_id=chr5:43313574..43313585,- | |||
|description=CAGE_peak_3_at_HMGCS1_5end | |||
|id=chr5:43313574..43313585,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.92e-08;82 | |||
|ontology_enrichment_disease=DOID:305!1.58e-09!106;DOID:0050687!9.17e-09!143;DOID:162!5.52e-07!235;DOID:14566!8.69e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.18e-09,106;DOID:0050687,7.89e-09,143;DOID:162,7.49e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0001017!8.46e-23!82;UBERON:0005743!1.41e-21!86;UBERON:0000073!1.82e-21!94;UBERON:0001016!1.82e-21!94;UBERON:0001049!3.30e-21!57;UBERON:0005068!3.30e-21!57;UBERON:0006241!3.30e-21!57;UBERON:0007135!3.30e-21!57;UBERON:0002780!6.36e-21!41;UBERON:0001890!6.36e-21!41;UBERON:0006240!6.36e-21!41;UBERON:0003080!9.71e-21!42;UBERON:0007023!8.88e-20!115;UBERON:0000955!3.38e-19!69;UBERON:0006238!3.38e-19!69;UBERON:0001893!2.90e-18!34;UBERON:0002616!5.75e-18!59;UBERON:0002791!1.34e-17!33;UBERON:0001869!2.53e-17!32;UBERON:0002020!4.99e-17!34;UBERON:0003528!4.99e-17!34;UBERON:0002619!4.76e-14!22;UBERON:0000956!1.48e-13!25;UBERON:0000203!1.48e-13!25;UBERON:0001950!6.08e-13!20;UBERON:0003075!2.37e-11!86;UBERON:0007284!2.37e-11!86;UBERON:0002346!1.62e-10!90;UBERON:0003056!1.32e-09!61;UBERON:0000153!1.52e-07!129;UBERON:0007811!1.52e-07!129;UBERON:0000033!1.93e-07!123;UBERON:0004121!7.45e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.52e-16;32!UBERON:0001893;3.97e-16;34!UBERON:0002791;4.31e-16;32!UBERON:0002780;1.17e-15;41!UBERON:0001890;1.17e-15;41!UBERON:0003528;3.36e-15;34!UBERON:0002020;3.36e-15;34!UBERON:0002619;1.73e-14;22!UBERON:0000956;6.08e-14;25!UBERON:0000203;6.08e-14;25!UBERON:0001950;2.25e-13;20!UBERON:0000073;4.88e-13;53!UBERON:0002616;4.88e-13;53!UBERON:0000955;5.35e-10;68!UBERON:0001017;1.71e-09;75!UBERON:0001016;1.13e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.16e-23,81;UBERON:0001016,2.22e-23,89;UBERON:0001049,4.72e-22,56;UBERON:0005068,4.72e-22,56;UBERON:0006241,4.72e-22,56;UBERON:0007135,4.72e-22,56;UBERON:0002780,2.64e-21,41;UBERON:0001890,2.64e-21,41;UBERON:0003080,2.64e-21,41;UBERON:0006240,2.64e-21,41;UBERON:0000073,3.56e-21,53;UBERON:0002616,3.56e-21,53;UBERON:0000955,5.50e-20,68;UBERON:0006238,5.50e-20,68;UBERON:0007023,3.63e-19,114;UBERON:0001893,1.36e-18,34;UBERON:0001869,1.23e-17,32;UBERON:0002791,2.30e-17,32;UBERON:0003528,2.47e-17,34;UBERON:0002020,2.47e-17,34;UBERON:0011216,6.20e-16,223;UBERON:0002619,2.70e-14,22;UBERON:0000956,8.61e-14,25;UBERON:0000203,8.61e-14,25;UBERON:0001950,3.63e-13,20;UBERON:0003075,7.56e-11,82;UBERON:0007284,7.56e-11,82;UBERON:0003056,3.18e-10,61;UBERON:0002346,4.80e-10,86 | |||
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| ||
|short_description=p3@HMGCS1 | |||
}} | }} |
Latest revision as of 00:34, 18 September 2015
Short description: | p3@HMGCS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HMGCS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000507004, ENST00000507293_5end |
EntrezGene: | HMGCS1 |
HGNC: | 5007 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.16e-23 | 81 |
nervous system | 2.22e-23 | 89 |
neural tube | 4.72e-22 | 56 |
neural rod | 4.72e-22 | 56 |
future spinal cord | 4.72e-22 | 56 |
neural keel | 4.72e-22 | 56 |
regional part of forebrain | 2.64e-21 | 41 |
forebrain | 2.64e-21 | 41 |
anterior neural tube | 2.64e-21 | 41 |
future forebrain | 2.64e-21 | 41 |
regional part of nervous system | 3.56e-21 | 53 |
regional part of brain | 3.56e-21 | 53 |
brain | 5.50e-20 | 68 |
future brain | 5.50e-20 | 68 |
adult organism | 3.63e-19 | 114 |
telencephalon | 1.36e-18 | 34 |
cerebral hemisphere | 1.23e-17 | 32 |
regional part of telencephalon | 2.30e-17 | 32 |
brain grey matter | 2.47e-17 | 34 |
gray matter | 2.47e-17 | 34 |
organ system subdivision | 6.20e-16 | 223 |
regional part of cerebral cortex | 2.70e-14 | 22 |
cerebral cortex | 8.61e-14 | 25 |
pallium | 8.61e-14 | 25 |
neocortex | 3.63e-13 | 20 |
neural plate | 7.56e-11 | 82 |
presumptive neural plate | 7.56e-11 | 82 |
pre-chordal neural plate | 3.18e-10 | 61 |
neurectoderm | 4.80e-10 | 86 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.18e-09 | 106 |
cell type cancer | 7.89e-09 | 143 |
cancer | 7.49e-07 | 235 |