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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005625
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005625
|HumanCAGEScanFiles=NCig10048;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008327;DRR009199;DRZ000624;DRZ002009;DRZ011974;DRZ013359
|accession_numbers_RNASeq=sRNA-Seq;DRX037093;DRR041459;DRZ007101
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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170863368,+!p2@TBP!0.14!1.61!TBP;;chr14:45722335..45722348,-!p3@MIS18BP1!0.14!1.34!MIS18BP1;;chr14:62203749..62203798,+!p5@HIF1A!0.14!1.07!HIF1A;;chr8:145159277..145159282,+!p7@MAF1!0.14!1.07!MAF1;;chr4:57774884..57774924,+!p4@REST!0.14!1.07!REST;;chr6:108882364..108882391,+!p4@FOXO3!0.14!0.90!FOXO3;;chr1:61869835..61869848,+!p8@NFIA!0.14!0.81!NFIA;;chr11:12696071..12696086,+!p3@TEAD1!0.14!0.81!TEAD1;;chr12:80083544..80083558,-!p13@PAWR!0.14!0.72!PAWR;;chr13:74708552..74708573,-!p9@KLF12!0.14!0.72!KLF12;;chr22:39916289..39916302,+!p3@ATF4!0.14!0.63!ATF4;;chr5:34929677..34929789,+!p1@DNAJC21!0.13!34.93!DNAJC21;;chr5:132299290..132299310,-!p2@AFF4!0.13!23.02!AFF4;;chr1:91487553..91487612,-!p1@ZNF644!0.13!20.24!ZNF644;;chr19:39390587..39390646,+!p1@NFKBIB!0.13!18.81!NFKBIB;;chr11:3400340..3400422,-!p1@ZNF195!0.13!18.72!ZNF195;;chr21:43430440..43430485,-!p1@ZNF295!0.13!16.21!ZNF295;;chr9:125675576..125675612,-!p1@ZBTB6!0.13!14.96!ZBTB6;;chr19:57791328..57791377,+!p2@ZNF460!0.13!13.97!ZNF460;;chr8:144718171..144718244,+!p1@ZNF623!0.13!12.18!ZNF623;;chr19:53400852..53400962,-!p1@ZNF320!0.13!11.55!ZNF320;;chr19:52531600..52531685,-!p1@ZNF614!0.13!10.48!ZNF614;;chr10:3827371..3827386,-!p2@KLF6!0.13!9.67!KLF6;;chr1:41157266..41157314,+!p3@NFYC!0.13!9.49!NFYC;;chr13:27998831..27998851,+!p2@GTF3A!0.13!6.54!GTF3A;;chr16:69419794..69419830,-!p3@TERF2!0.13!5.10!TERF2;;chr8:124286775..124286860,-!p2@ZHX1!0.13!4.57!ZHX1;;chr11:62369352..62369373,-!p5@MTA2!0.13!3.94!MTA2;;chr20:49547593..49547611,-!p3@ADNP!0.13!3.22!ADNP;;chr7:42276822..42276895,-!p2@GLI3!0.13!2.87!GLI3;;chr19:23941680..23941704,-!p1@ZNF681!0.13!2.78!ZNF681;;chr19:19779619..19779670,+!p1@ZNF101!0.13!2.60!ZNF101;;chr11:58346585..58346607,+!p2@ZFP91!0.13!2.06!ZFP91;;chr12:3068466..3068495,+!p3@TEAD4!0.13!1.79!TEAD4;;chr2:113033141..113033162,+!p2@ZC3H6!0.13!1.79!ZC3H6;;chr2:37458749..37458766,-!p2@CEBPZ!0.13!1.79!CEBPZ;;chr6:26659967..26659982,-!p1@ZNF322P1,p1@ZNF322!0.13!1.70!ZNF322;;chr17:2304226..2304239,-!p3@MNT!0.13!1.61!MNT;;chr2:208030886..208030917,-!p4@KLF7!0.13!1.52!KLF7;;chr3:168864315..168864339,-!p2@MECOM!0.13!1.16!MECOM;;chr5:172484377..172484418,+!p2@C5orf41!0.13!1.16!CREBRF;;chr7:137564372..137564394,-!p7@CREB3L2!0.13!1.16!CREB3L2;;chr17:20492136..20492165,+!p1@MEIS3P2!0.13!1.07!MEIS3P2;;chr18:56530136..56530199,+!p3@ZNF532!0.13!0.99!ZNF532;;chr9:14313893..14313908,-!p7@NFIB!0.13!0.90!NFIB;;chrX:129402754..129402766,-!p3@ZNF280C!0.13!0.81!ZNF280C;;chr13:46549688..46549712,-!p5@ZC3H13!0.13!0.81!ZC3H13;;chr3:37216069..37216075,-!p4@LRRFIP2!0.13!0.72!LRRFIP2;;chr4:81104985..81105005,+!p4@PRDM8!0.13!0.63!PRDM8;;chr10:3818891..3818895,-!p6@KLF6!0.13!0.63!KLF6;;chr16:69600181..69600202,+!p5@NFAT5!0.13!0.63!NFAT5;;chr19:23299814..23299844,+!p1@ZNF730!0.13!0.63!ZNF730;;chr1:41204530..41204541,+!p8@NFYC!0.13!0.63!NFYC;;chr20:48807548..48807572,+!p14@CEBPB!0.13!0.63!CEBPB;;chr11:47237922..47237964,+!p4@DDB2!0.13!0.54!DDB2;;chr11:65430535..65430549,-!p4@RELA!0.13!0.54!RELA;;chr22:21355865..21355886,-!p5@THAP7!0.13!0.54!THAP7;;chr2:101591314..101591333,+!p2@NPAS2!0.13!0.54!NPAS2;;chr3:12330560..12330579,+!p1@PPARG!0.13!0.54!PPARG;;chr16:67063262..67063273,+!p7@CBFB!0.13!0.54!CBFB;;chr15:31619200..31619211,+!p12@KLF13!0.13!0.45!KLF13;;chr16:86600458..86600461,+!p3@FOXC2!0.13!0.36!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.13!0.36!FOXC2;;chr17:46682321..46682362,-!p1@HOXB6!0.13!0.36!HOXB6;;chr17:48072574..48072597,-!p1@DLX3!0.13!0.36!DLX3;;chr18:42260861..42260882,+!p5@SETBP1!0.13!0.36!SETBP1;;chr18:53089493..53089517,-!p15@TCF4!0.13!0.36!TCF4;;chr19:3572758..3572795,+!p7@HMG20B!0.13!0.36!HMG20B;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg38.nobarcode.ctss.bed.gz
|id=FF:11273-116H4
|id=FF:11273-116H4
|is_a=EFO:0002091;;FF:0000088
|is_a=EFO:0002091;;FF:0000088
|is_obsolete=
|is_obsolete=
|library_id=CNhs11077
|library_id_phase_based=2:CNhs11077
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11273
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GCCAAT.11273
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11273
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GCCAAT.11273
|name=Mammary Epithelial Cell, donor1
|name=Mammary Epithelial Cell, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 65:
|profile_cagescan=NCig10048,,,
|profile_cagescan=NCig10048,,,
|profile_hcage=CNhs11077,LSID724,release008,COMPLETED
|profile_hcage=CNhs11077,LSID724,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10007,,,
|profile_srnaseq=SRhi10007,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 84: Line 106:
|top_motifs=TBX4,5:2.59312049691;TP53:2.51239773796;NKX2-1,4:1.81811550282;VSX1,2:1.71825005273;NKX2-2,8:1.56981654034;PDX1:1.55989702878;TEF:1.47789783123;ZEB1:1.45355641443;ADNP_IRX_SIX_ZHX:1.31699001144;NKX2-3_NKX2-5:1.21055802545;POU1F1:1.09423097031;SNAI1..3:1.07711895247;NR3C1:1.04027702764;CDC5L:0.998657567654;HOX{A4,D4}:0.989596460689;ONECUT1,2:0.908968035708;ELK1,4_GABP{A,B1}:0.859194644079;TEAD1:0.828480606636;EN1,2:0.804919276657;NKX3-2:0.757977658664;PPARG:0.727150204895;EVI1:0.684645347338;bHLH_family:0.644766711687;FOX{I1,J2}:0.643066867206;PAX4:0.622945154144;MYB:0.604353226012;PAX8:0.594402307713;HMGA1,2:0.586365158778;E2F1..5:0.525821359684;NFIL3:0.520261458084;FOS_FOS{B,L1}_JUN{B,D}:0.479424691515;TFDP1:0.477852164606;ARID5B:0.476921298603;UFEwm:0.476676582018;HIF1A:0.467543951204;BACH2:0.460922348529;FOXO1,3,4:0.453772027768;CREB1:0.447136368949;POU6F1:0.429532223137;KLF4:0.417749173256;GFI1:0.386632006442;SOX17:0.363793331997;FOXQ1:0.361021434811;MYOD1:0.353514716354;CEBPA,B_DDIT3:0.320305468351;FOXL1:0.316421144647;ZNF143:0.313445087629;HOX{A5,B5}:0.300040092681;FOSL2:0.297333195527;STAT5{A,B}:0.284437037025;CRX:0.278227175295;FOXM1:0.268803629537;ELF1,2,4:0.266407822193;POU2F1..3:0.261280646758;FOXN1:0.258448441543;MYBL2:0.254498265157;T:0.249900158684;TBP:0.223877492188;XCPE1{core}:0.220064696075;ZBTB16:0.209586408786;PAX1,9:0.206355665854;NR5A1,2:0.20546517927;AR:0.181658718642;POU5F1:0.179988139797;DBP:0.178781984106;ZNF238:0.159136836972;NR1H4:0.144962443589;ATF4:0.115824451906;NRF1:0.112558998844;ZNF148:0.0909022174038;AHR_ARNT_ARNT2:0.0864612511744;HSF1,2:0.0838935254274;IKZF1:0.0834085937783;SMAD1..7,9:0.0783761201;HOX{A6,A7,B6,B7}:0.0396640387809;SP1:0.0334250913709;OCT4_SOX2{dimer}:0.0273256390699;GFI1B:0.024212085691;FOXA2:0.0194642553775;NFY{A,B,C}:0.0185009348635;GLI1..3:-0.00439077910872;TLX2:-0.00622194214409;GATA4:-0.0096756850617;NFIX:-0.011217799499;MTF1:-0.0135802860256;NFE2:-0.0182553000416;EP300:-0.0226103525895;HLF:-0.0308046215027;RXR{A,B,G}:-0.0479255833768;ZIC1..3:-0.0498458002198;AIRE:-0.0503760678644;MAZ:-0.0539457902343;RBPJ:-0.0607665501679;ALX1:-0.0962157925048;LMO2:-0.108179867089;YY1:-0.109372112117;BPTF:-0.113957290179;HNF1A:-0.12745489292;ATF2:-0.138849819784;FOX{F1,F2,J1}:-0.139014899677;ATF5_CREB3:-0.140737064857;PAX5:-0.149456028038;IRF7:-0.153340188958;MTE{core}:-0.164393775541;PAX2:-0.164407212064;ZBTB6:-0.179529385973;IKZF2:-0.18675955688;HES1:-0.198877787374;SOX2:-0.207817932887;POU3F1..4:-0.221113312213;REST:-0.227715894632;FOXP1:-0.235429876703;ZNF384:-0.237409650788;SPI1:-0.240910824824;PITX1..3:-0.245478596014;NFKB1_REL_RELA:-0.275739193459;TOPORS:-0.284621770369;TLX1..3_NFIC{dimer}:-0.298854084524;LEF1_TCF7_TCF7L1,2:-0.303548332498;EGR1..3:-0.309564976877;HNF4A_NR2F1,2:-0.317203853584;PRDM1:-0.323155021367;TFCP2:-0.330179971782;RFX2..5_RFXANK_RFXAP:-0.330738526368;NKX3-1:-0.334369566225;HBP1_HMGB_SSRP1_UBTF:-0.334872963979;TFAP2{A,C}:-0.357072385393;FOXP3:-0.361879805824;RFX1:-0.363630900663;FOXD3:-0.375237177745;GTF2A1,2:-0.381111540697;NR6A1:-0.390319024066;BREu{core}:-0.391140841164;GTF2I:-0.391538434993;ZFP161:-0.396177362264;HAND1,2:-0.400761971575;NHLH1,2:-0.401075320726;CUX2:-0.404264398385;EBF1:-0.405840730391;DMAP1_NCOR{1,2}_SMARC:-0.408346545804;GATA6:-0.41086914476;JUN:-0.421821221997;NFATC1..3:-0.425078218239;ETS1,2:-0.449595908632;LHX3,4:-0.450183386808;RUNX1..3:-0.466545246215;SPIB:-0.476593076869;RXRA_VDR{dimer}:-0.478744953968;SRF:-0.485558131832;PRRX1,2:-0.488262121278;GZF1:-0.495280530451;NANOG:-0.495894140587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.515967719589;ZNF423:-0.523138987934;MED-1{core}:-0.537804198664;PBX1:-0.557009329074;NFE2L2:-0.560042951972;PAX6:-0.561153161089;TFAP4:-0.564135451967;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.564880818093;ALX4:-0.570343891683;HIC1:-0.577052657261;CDX1,2,4:-0.608550583432;NKX6-1,2:-0.610569440834;GCM1,2:-0.651680102347;STAT1,3:-0.671419329296;STAT2,4,6:-0.683168095868;TAL1_TCF{3,4,12}:-0.699570794159;MEF2{A,B,C,D}:-0.713469292131;FOX{D1,D2}:-0.724622515774;ESR1:-0.739464151526;RREB1:-0.792375707025;MYFfamily:-0.802862595573;SOX{8,9,10}:-0.819885725299;IRF1,2:-0.824954805005;TGIF1:-0.850986292203;SPZ1:-0.870965364517;TFAP2B:-0.88141111161;SOX5:-0.889438520558;PATZ1:-0.898538337363;ESRRA:-0.909072890421;XBP1:-0.931858318314;MZF1:-0.958681642211;NFE2L1:-0.974932372136;PAX3,7:-1.00049250445;ATF6:-1.02064669043;SREBF1,2:-1.09508549691;RORA:-1.09531654604;NANOG{mouse}:-1.14934654848;MAFB:-1.17862182916;HMX1:-1.28484850145;HOXA9_MEIS1:-1.42627055365
|top_motifs=TBX4,5:2.59312049691;TP53:2.51239773796;NKX2-1,4:1.81811550282;VSX1,2:1.71825005273;NKX2-2,8:1.56981654034;PDX1:1.55989702878;TEF:1.47789783123;ZEB1:1.45355641443;ADNP_IRX_SIX_ZHX:1.31699001144;NKX2-3_NKX2-5:1.21055802545;POU1F1:1.09423097031;SNAI1..3:1.07711895247;NR3C1:1.04027702764;CDC5L:0.998657567654;HOX{A4,D4}:0.989596460689;ONECUT1,2:0.908968035708;ELK1,4_GABP{A,B1}:0.859194644079;TEAD1:0.828480606636;EN1,2:0.804919276657;NKX3-2:0.757977658664;PPARG:0.727150204895;EVI1:0.684645347338;bHLH_family:0.644766711687;FOX{I1,J2}:0.643066867206;PAX4:0.622945154144;MYB:0.604353226012;PAX8:0.594402307713;HMGA1,2:0.586365158778;E2F1..5:0.525821359684;NFIL3:0.520261458084;FOS_FOS{B,L1}_JUN{B,D}:0.479424691515;TFDP1:0.477852164606;ARID5B:0.476921298603;UFEwm:0.476676582018;HIF1A:0.467543951204;BACH2:0.460922348529;FOXO1,3,4:0.453772027768;CREB1:0.447136368949;POU6F1:0.429532223137;KLF4:0.417749173256;GFI1:0.386632006442;SOX17:0.363793331997;FOXQ1:0.361021434811;MYOD1:0.353514716354;CEBPA,B_DDIT3:0.320305468351;FOXL1:0.316421144647;ZNF143:0.313445087629;HOX{A5,B5}:0.300040092681;FOSL2:0.297333195527;STAT5{A,B}:0.284437037025;CRX:0.278227175295;FOXM1:0.268803629537;ELF1,2,4:0.266407822193;POU2F1..3:0.261280646758;FOXN1:0.258448441543;MYBL2:0.254498265157;T:0.249900158684;TBP:0.223877492188;XCPE1{core}:0.220064696075;ZBTB16:0.209586408786;PAX1,9:0.206355665854;NR5A1,2:0.20546517927;AR:0.181658718642;POU5F1:0.179988139797;DBP:0.178781984106;ZNF238:0.159136836972;NR1H4:0.144962443589;ATF4:0.115824451906;NRF1:0.112558998844;ZNF148:0.0909022174038;AHR_ARNT_ARNT2:0.0864612511744;HSF1,2:0.0838935254274;IKZF1:0.0834085937783;SMAD1..7,9:0.0783761201;HOX{A6,A7,B6,B7}:0.0396640387809;SP1:0.0334250913709;OCT4_SOX2{dimer}:0.0273256390699;GFI1B:0.024212085691;FOXA2:0.0194642553775;NFY{A,B,C}:0.0185009348635;GLI1..3:-0.00439077910872;TLX2:-0.00622194214409;GATA4:-0.0096756850617;NFIX:-0.011217799499;MTF1:-0.0135802860256;NFE2:-0.0182553000416;EP300:-0.0226103525895;HLF:-0.0308046215027;RXR{A,B,G}:-0.0479255833768;ZIC1..3:-0.0498458002198;AIRE:-0.0503760678644;MAZ:-0.0539457902343;RBPJ:-0.0607665501679;ALX1:-0.0962157925048;LMO2:-0.108179867089;YY1:-0.109372112117;BPTF:-0.113957290179;HNF1A:-0.12745489292;ATF2:-0.138849819784;FOX{F1,F2,J1}:-0.139014899677;ATF5_CREB3:-0.140737064857;PAX5:-0.149456028038;IRF7:-0.153340188958;MTE{core}:-0.164393775541;PAX2:-0.164407212064;ZBTB6:-0.179529385973;IKZF2:-0.18675955688;HES1:-0.198877787374;SOX2:-0.207817932887;POU3F1..4:-0.221113312213;REST:-0.227715894632;FOXP1:-0.235429876703;ZNF384:-0.237409650788;SPI1:-0.240910824824;PITX1..3:-0.245478596014;NFKB1_REL_RELA:-0.275739193459;TOPORS:-0.284621770369;TLX1..3_NFIC{dimer}:-0.298854084524;LEF1_TCF7_TCF7L1,2:-0.303548332498;EGR1..3:-0.309564976877;HNF4A_NR2F1,2:-0.317203853584;PRDM1:-0.323155021367;TFCP2:-0.330179971782;RFX2..5_RFXANK_RFXAP:-0.330738526368;NKX3-1:-0.334369566225;HBP1_HMGB_SSRP1_UBTF:-0.334872963979;TFAP2{A,C}:-0.357072385393;FOXP3:-0.361879805824;RFX1:-0.363630900663;FOXD3:-0.375237177745;GTF2A1,2:-0.381111540697;NR6A1:-0.390319024066;BREu{core}:-0.391140841164;GTF2I:-0.391538434993;ZFP161:-0.396177362264;HAND1,2:-0.400761971575;NHLH1,2:-0.401075320726;CUX2:-0.404264398385;EBF1:-0.405840730391;DMAP1_NCOR{1,2}_SMARC:-0.408346545804;GATA6:-0.41086914476;JUN:-0.421821221997;NFATC1..3:-0.425078218239;ETS1,2:-0.449595908632;LHX3,4:-0.450183386808;RUNX1..3:-0.466545246215;SPIB:-0.476593076869;RXRA_VDR{dimer}:-0.478744953968;SRF:-0.485558131832;PRRX1,2:-0.488262121278;GZF1:-0.495280530451;NANOG:-0.495894140587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.515967719589;ZNF423:-0.523138987934;MED-1{core}:-0.537804198664;PBX1:-0.557009329074;NFE2L2:-0.560042951972;PAX6:-0.561153161089;TFAP4:-0.564135451967;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.564880818093;ALX4:-0.570343891683;HIC1:-0.577052657261;CDX1,2,4:-0.608550583432;NKX6-1,2:-0.610569440834;GCM1,2:-0.651680102347;STAT1,3:-0.671419329296;STAT2,4,6:-0.683168095868;TAL1_TCF{3,4,12}:-0.699570794159;MEF2{A,B,C,D}:-0.713469292131;FOX{D1,D2}:-0.724622515774;ESR1:-0.739464151526;RREB1:-0.792375707025;MYFfamily:-0.802862595573;SOX{8,9,10}:-0.819885725299;IRF1,2:-0.824954805005;TGIF1:-0.850986292203;SPZ1:-0.870965364517;TFAP2B:-0.88141111161;SOX5:-0.889438520558;PATZ1:-0.898538337363;ESRRA:-0.909072890421;XBP1:-0.931858318314;MZF1:-0.958681642211;NFE2L1:-0.974932372136;PAX3,7:-1.00049250445;ATF6:-1.02064669043;SREBF1,2:-1.09508549691;RORA:-1.09531654604;NANOG{mouse}:-1.14934654848;MAFB:-1.17862182916;HMX1:-1.28484850145;HOXA9_MEIS1:-1.42627055365
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11273-116H4;search_select_hide=table117:FF:11273-116H4
}}
}}

Latest revision as of 16:29, 3 June 2020

Name:Mammary Epithelial Cell, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11077
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage29 years old adult
sexfemale
age29
cell typemammary gland epithelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1691
catalog numberCA830-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005625
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11077 CAGE DRX008327 DRR009199
Accession ID Hg19

Library idBAMCTSS
CNhs11077 DRZ000624 DRZ002009
Accession ID Hg38

Library idBAMCTSS
CNhs11077 DRZ011974 DRZ013359
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10048downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005625
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.GCCAAT sRNA-Seq DRX037093 DRR041459
Accession ID Hg19

Library idBAMCTSS
SRhi10007.GCCAAT DRZ007101


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.28
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.428
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.417
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0528
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0307
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0373
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.184
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.51
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.207
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.969
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.297
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0104
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0168
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.37
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.3
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0373
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.133
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.661
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11077

Jaspar motifP-value
MA0002.20.055
MA0003.10.208
MA0004.10.423
MA0006.10.247
MA0007.10.458
MA0009.10.367
MA0014.10.088
MA0017.10.387
MA0018.20.105
MA0019.10.744
MA0024.10.00401
MA0025.10.933
MA0027.10.581
MA0028.11.2108e-5
MA0029.10.71
MA0030.10.203
MA0031.10.331
MA0035.20.0135
MA0038.10.635
MA0039.20.00452
MA0040.10.0354
MA0041.10.306
MA0042.10.106
MA0043.10.839
MA0046.10.435
MA0047.20.572
MA0048.10.138
MA0050.17.57905e-8
MA0051.15.03906e-6
MA0052.18.71642e-4
MA0055.10.00155
MA0057.10.159
MA0058.10.0505
MA0059.10.538
MA0060.10.241
MA0061.10.17
MA0062.21.92435e-4
MA0065.20.869
MA0066.10.644
MA0067.10.101
MA0068.10.041
MA0069.10.215
MA0070.10.703
MA0071.10.0791
MA0072.10.509
MA0073.10.997
MA0074.10.656
MA0076.16.5206e-5
MA0077.10.954
MA0078.10.637
MA0079.20.515
MA0080.28.11824e-6
MA0081.10.198
MA0083.10.0023
MA0084.10.415
MA0087.10.111
MA0088.10.527
MA0090.14.59118e-4
MA0091.10.023
MA0092.10.305
MA0093.10.255
MA0099.24.721e-5
MA0100.10.0969
MA0101.10.323
MA0102.20.332
MA0103.18.20804e-5
MA0104.20.505
MA0105.10.715
MA0106.12.20236e-16
MA0107.10.0561
MA0108.21.07343e-6
MA0111.10.828
MA0112.20.888
MA0113.10.453
MA0114.10.86
MA0115.10.928
MA0116.10.468
MA0117.10.73
MA0119.10.361
MA0122.10.363
MA0124.10.499
MA0125.10.418
MA0131.10.0754
MA0135.10.607
MA0136.10.0328
MA0137.20.0259
MA0138.20.867
MA0139.10.522
MA0140.10.0784
MA0141.10.11
MA0142.10.214
MA0143.10.782
MA0144.10.682
MA0145.10.0699
MA0146.10.721
MA0147.10.252
MA0148.10.283
MA0149.10.0587
MA0150.10.69
MA0152.10.12
MA0153.10.24
MA0154.10.436
MA0155.10.00795
MA0156.10.538
MA0157.10.0683
MA0159.10.943
MA0160.10.131
MA0162.10.99
MA0163.10.203
MA0164.10.681
MA0258.10.0688
MA0259.10.183



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11077

Novel motifP-value
10.733
100.689
1000.593
1010.177
1020.303
1030.199
1040.69
1050.993
1060.437
1070.311
1080.834
1090.00965
110.904
1100.177
1110.131
1120.846
1130.0487
1140.908
1150.73
1160.645
1170.356
1180.811
1190.45
120.422
1200.0509
1210.432
1220.506
1230.397
1240.0155
1250.374
1260.624
1270.456
1280.134
1290.405
130.0418
1300.668
1310.19
1320.269
1330.139
1340.209
1350.171
1360.0104
1370.0958
1380.446
1390.0842
140.438
1400.77
1410.188
1420.263
1430.389
1440.152
1450.897
1460.415
1470.663
1480.218
1490.227
150.891
1500.262
1510.922
1520.21
1530.252
1540.747
1550.913
1560.632
1570.349
1580.0446
1590.358
160.0508
1600.907
1610.981
1620.45
1630.371
1640.0945
1650.0762
1660.356
1670.987
1680.543
1690.337
170.349
180.521
190.566
20.881
200.0727
210.574
220.627
230.887
240.0121
250.675
260.973
270.209
280.122
290.489
30.787
300.307
310.643
320.124
330.0396
340.0284
350.053
360.602
370.527
380.968
390.484
40.462
400.66
410.135
420.673
430.588
440.894
450.698
460.594
470.599
480.189
490.21
50.561
500.315
510.385
520.753
530.138
540.72
550.321
560.906
570.24
580.825
590.257
60.978
600.653
610.621
620.517
630.352
640.694
650.255
660.139
670.946
680.135
690.657
70.949
700.0893
710.45
720.904
730.0326
740.872
750.0889
760.385
770.758
780.0428
790.109
80.763
800.367
810.214
820.16
830.798
840.374
850.151
860.513
870.0345
880.711
890.0601
90.137
900.106
910.62
920.153
930.995
940.701
950.013
960.755
970.847
980.369
990.325



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11077


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000088 (human mammary epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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