FF:11694-123A2: Difference between revisions

Latest revision as of 18:15, 4 June 2020

Name:	Amniotic Epithelial Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12125
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	amnion
dev stage	NA
sex	NA
age	NA
cell type	amniotic epithelial cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC7105
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005453

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12125		CAGE		DRX008109		DRR008981

Accession ID Hg19

Library id		BAM		CTSS
CNhs12125		DRZ000406		DRZ001791

Accession ID Hg38

Library id		BAM		CTSS
CNhs12125		DRZ011756		DRZ013141

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005453

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10005.GTGAAA		sRNA-Seq		DRX037064		DRR041430

Accession ID Hg19

Library id		BAM		CTSS
SRhi10005.GTGAAA		DRZ007072

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0972
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.528
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.072
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0646
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.371
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.199
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.184
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.262
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.62
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.032
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.256
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.102
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.253
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.243
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.433
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.639
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.313
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.471
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.739
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12125

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.683
MA0003.1	MA0003.1	0.329
MA0004.1	MA0004.1	0.603
MA0006.1	MA0006.1	0.0699
MA0007.1	MA0007.1	0.0117
MA0009.1	MA0009.1	0.607
MA0014.1	MA0014.1	0.747
MA0017.1	MA0017.1	0.66
MA0018.2	MA0018.2	0.0151
MA0019.1	MA0019.1	0.242
MA0024.1	MA0024.1	0.141
MA0025.1	MA0025.1	0.0257
MA0027.1	MA0027.1	0.733
MA0028.1	MA0028.1	0.0225
MA0029.1	MA0029.1	0.0672
MA0030.1	MA0030.1	0.0203
MA0031.1	MA0031.1	0.0169
MA0035.2	MA0035.2	0.228
MA0038.1	MA0038.1	0.339
MA0039.2	MA0039.2	0.126
MA0040.1	MA0040.1	0.302
MA0041.1	MA0041.1	0.75
MA0042.1	MA0042.1	0.415
MA0043.1	MA0043.1	7.24482e-4
MA0046.1	MA0046.1	0.798
MA0047.2	MA0047.2	0.424
MA0048.1	MA0048.1	0.96
MA0050.1	MA0050.1	1.80754e-6
MA0051.1	MA0051.1	1.24616e-6
MA0052.1	MA0052.1	0.569
MA0055.1	MA0055.1	0.0446
MA0057.1	MA0057.1	0.336
MA0058.1	MA0058.1	0.281
MA0059.1	MA0059.1	0.726
MA0060.1	MA0060.1	0.464
MA0061.1	MA0061.1	0.712
MA0062.2	MA0062.2	8.79378e-6
MA0065.2	MA0065.2	0.173
MA0066.1	MA0066.1	0.138
MA0067.1	MA0067.1	0.00613
MA0068.1	MA0068.1	0.208
MA0069.1	MA0069.1	0.401
MA0070.1	MA0070.1	0.0245
MA0071.1	MA0071.1	0.484
MA0072.1	MA0072.1	0.675
MA0073.1	MA0073.1	0.407
MA0074.1	MA0074.1	0.364
MA0076.1	MA0076.1	5.29519e-4
MA0077.1	MA0077.1	0.587
MA0078.1	MA0078.1	0.501
MA0079.2	MA0079.2	0.445
MA0080.2	MA0080.2	4.77093e-8
MA0081.1	MA0081.1	7.38018e-4
MA0083.1	MA0083.1	0.768
MA0084.1	MA0084.1	0.298
MA0087.1	MA0087.1	0.842
MA0088.1	MA0088.1	0.567
MA0090.1	MA0090.1	1.99227e-4
MA0091.1	MA0091.1	0.197
MA0092.1	MA0092.1	0.304
MA0093.1	MA0093.1	0.47
MA0099.2	MA0099.2	0.00121
MA0100.1	MA0100.1	0.24
MA0101.1	MA0101.1	0.167
MA0102.2	MA0102.2	2.042e-4
MA0103.1	MA0103.1	0.00339
MA0104.2	MA0104.2	0.144
MA0105.1	MA0105.1	0.89
MA0106.1	MA0106.1	0.228
MA0107.1	MA0107.1	0.115
MA0108.2	MA0108.2	0.291
MA0111.1	MA0111.1	0.613
MA0112.2	MA0112.2	0.016
MA0113.1	MA0113.1	0.00699
MA0114.1	MA0114.1	0.324
MA0115.1	MA0115.1	0.304
MA0116.1	MA0116.1	0.534
MA0117.1	MA0117.1	0.288
MA0119.1	MA0119.1	0.221
MA0122.1	MA0122.1	0.94
MA0124.1	MA0124.1	0.771
MA0125.1	MA0125.1	0.335
MA0131.1	MA0131.1	0.452
MA0135.1	MA0135.1	0.696
MA0136.1	MA0136.1	8.98397e-10
MA0137.2	MA0137.2	0.00426
MA0138.2	MA0138.2	0.424
MA0139.1	MA0139.1	0.914
MA0140.1	MA0140.1	0.595
MA0141.1	MA0141.1	0.354
MA0142.1	MA0142.1	0.682
MA0143.1	MA0143.1	0.25
MA0144.1	MA0144.1	0.986
MA0145.1	MA0145.1	0.143
MA0146.1	MA0146.1	0.0327
MA0147.1	MA0147.1	0.259
MA0148.1	MA0148.1	0.976
MA0149.1	MA0149.1	0.816
MA0150.1	MA0150.1	0.481
MA0152.1	MA0152.1	0.871
MA0153.1	MA0153.1	0.46
MA0154.1	MA0154.1	0.277
MA0155.1	MA0155.1	0.126
MA0156.1	MA0156.1	6.95269e-7
MA0157.1	MA0157.1	0.0152
MA0159.1	MA0159.1	0.323
MA0160.1	MA0160.1	0.784
MA0162.1	MA0162.1	0.0399
MA0163.1	MA0163.1	0.168
MA0164.1	MA0164.1	0.143
MA0258.1	MA0258.1	0.0877
MA0259.1	MA0259.1	0.141

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12125

Novel motif	Logo	P-value
1	1	0.806
10	10	0.781
100	100	0.758
101	101	0.641
102	102	0.75
103	103	0.21
104	104	0.868
105	105	0.252
106	106	0.00442
107	107	0.0102
108	108	0.119
109	109	0.0553
11	11	0.255
110	110	0.138
111	111	0.701
112	112	0.779
113	113	0.00653
114	114	0.575
115	115	0.567
116	116	0.412
117	117	0.34
118	118	0.433
119	119	0.155
12	12	0.952
120	120	0.191
121	121	0.553
122	122	0.741
123	123	0.664
124	124	0.239
125	125	0.505
126	126	0.407
127	127	0.505
128	128	0.0847
129	129	0.407
13	13	0.341
130	130	0.631
131	131	0.0168
132	132	0.177
133	133	0.298
134	134	0.21
135	135	0.496
136	136	0.554
137	137	0.113
138	138	0.616
139	139	0.871
14	14	0.792
140	140	0.282
141	141	0.674
142	142	0.154
143	143	0.828
144	144	0.558
145	145	0.441
146	146	0.113
147	147	0.156
148	148	0.161
149	149	0.0673
15	15	0.83
150	150	0.221
151	151	0.256
152	152	0.0272
153	153	0.212
154	154	0.757
155	155	0.467
156	156	0.437
157	157	0.415
158	158	0.723
159	159	0.539
16	16	0.0677
160	160	0.0635
161	161	0.307
162	162	0.202
163	163	0.93
164	164	0.708
165	165	0.998
166	166	0.644
167	167	0.273
168	168	0.524
169	169	0.0468
17	17	0.0672
18	18	0.147
19	19	0.272
2	2	0.0957
20	20	0.919
21	21	0.803
22	22	0.159
23	23	0.115
24	24	0.676
25	25	0.96
26	26	0.152
27	27	0.306
28	28	0.915
29	29	0.492
3	3	0.56
30	30	0.22
31	31	0.499
32	32	1.30338e-6
33	33	0.518
34	34	0.367
35	35	0.359
36	36	0.299
37	37	0.336
38	38	0.436
39	39	0.224
4	4	0.514
40	40	0.0368
41	41	0.996
42	42	0.83
43	43	0.196
44	44	0.217
45	45	0.138
46	46	0.334
47	47	0.669
48	48	0.201
49	49	0.194
5	5	0.928
50	50	0.404
51	51	0.215
52	52	0.224
53	53	0.821
54	54	0.226
55	55	0.132
56	56	0.32
57	57	0.459
58	58	0.7
59	59	0.0605
6	6	0.485
60	60	0.305
61	61	0.709
62	62	0.928
63	63	0.298
64	64	0.139
65	65	0.161
66	66	0.328
67	67	0.429
68	68	0.276
69	69	0.00233
7	7	0.613
70	70	0.0572
71	71	0.379
72	72	0.83
73	73	0.0339
74	74	0.0741
75	75	0.392
76	76	0.446
77	77	0.0165
78	78	0.496
79	79	0.0455
8	8	0.2
80	80	0.909
81	81	0.908
82	82	0.354
83	83	0.756
84	84	0.411
85	85	0.118
86	86	0.657
87	87	0.627
88	88	0.167
89	89	0.129
9	9	0.46
90	90	0.13
91	91	0.0987
92	92	0.456
93	93	0.5
94	94	0.398
95	95	0.144
96	96	0.918
97	97	0.341
98	98	0.591
99	99	0.00677

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12125

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000009 human amniotic epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002536 (amniotic epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000009 (human amniotic epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005453
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005453
+|accession_numbers=CAGE;DRX008109;DRR008981;DRZ000406;DRZ001791;DRZ011756;DRZ013141
+|accession_numbers_RNASeq=sRNA-Seq;DRX037064;DRR041430;DRZ007072
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002536
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!2.15!369.27!OSR1;;chr5:153857778..153857794,-!p1@HAND1!2.11!129.25!HAND1;;chr10:8096631..8096660,+!p1@GATA3!1.76!67.79!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.75!64.36!GATA3;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.12!GRHL2;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!55.39!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!67.52!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.63!41.68!ZBED2;;chr1:209979467..209979494,-!p1@IRF6!1.57!40.88!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!1.48!179.10!SNAI2;;chr8:102504690..102504704,+!p3@GRHL2!1.48!29.54!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.48!29.01!HAND2;;chr5:2751762..2751784,-!p1@IRX2!1.46!27.70!IRX2;;chr8:102504979..102505010,+!p2@GRHL2!1.44!26.64!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.42!31.65!TFAP2C;;chr19:46801639..46801699,+!p1@HIF3A!1.42!25.06!HIF3A;;chr4:188916918..188916942,+!p1@ZFP42!1.40!24.27!ZFP42;;chr17:7493405..7493419,-!p1@SOX15!1.38!23.21!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.37!445.77!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.37!60.93!EPAS1;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.46!HAND2;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.85!HEY1;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.24!CREB3L1;;chr19:46800289..46800327,+!p2@HIF3A!1.21!15.03!HIF3A;;chr5:3595934..3595957,+!p2@IRX1!1.15!13.19!IRX1;;chr5:3595977..3595999,+!p1@IRX1!1.15!13.19!IRX1;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.19!SOX11;;chr5:72744594..72744609,-!p1@FOXD1!1.11!54.86!FOXD1;;chr5:153857800..153857812,-!p2@HAND1!1.10!11.61!HAND1;;chr1:6479968..6479986,-!p1@HES2!1.09!11.34!HES2;;chr11:46299539..46299620,+!p2@CREB3L1!1.07!18.20!CREB3L1;;chr5:3595961..3595975,+!p3@IRX1!1.06!10.55!IRX1;;chr2:231084820..231084836,-!p5@SP110!1.03!11.34!SP110;;chr6:10412576..10412599,-!p5@TFAP2A!1.03!9.76!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.02!9.50!IRX2;;chr16:31076332..31076388,-!p3@ZNF668!0.99!8.70!ZNF668;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.44!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.97!8.44!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.96!73.59!PPP1R13L;;chr17:7492684..7492778,-!p2@SOX15!0.96!17.41!SOX15;;chr9:110251836..110251887,-!p4@KLF4!0.96!10.81!KLF4;;chr16:86612320..86612394,+!p1@FOXL1!0.96!8.18!FOXL1;;chr2:19558327..19558334,-!p2@OSR1!0.96!8.18!OSR1;;chr16:67881588..67881612,-!p2@CENPT!0.95!10.81!CENPT;;chr10:8095593..8095625,+!p3@GATA3!0.93!8.97!GATA3;;chr19:926001..926046,+!p1@ARID3A!0.92!26.11!ARID3A;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.44!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.12!KDM5D;;chr4:299227..299272,-!p1@ZNF732!0.90!6.86!ZNF732;;chr14:75988771..75988826,+!p1@BATF!0.88!8.97!BATF;;chr20:39317868..39317884,-!p1@MAFB!0.87!81.50!MAFB;;chr20:18038521..18038571,-!p1@OVOL2!0.87!6.33!OVOL2;;chr19:17356189..17356221,-!p2@NR2F6!0.85!10.29!NR2F6;;chr12:54447637..54447659,+!p4@HOXC4!0.85!6.07!HOXC4;;chr3:111314230..111314241,-!p2@ZBED2!0.85!6.07!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.08!HMGA2;;chr19:926055..926068,+!p2@ARID3A!0.84!13.45!ARID3A;;chr11:113930425..113930471,+!p1@ZBTB16!0.84!8.70!ZBTB16;;chr5:153857819..153857824,-!p3@HAND1!0.83!5.80!HAND1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.80!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!0.82!14.77!FOXC2;;chr6:29648890..29648944,-!p1@ZFP57!0.82!5.54!ZFP57;;chr1:209979411..209979433,-!p2@IRF6!0.82!5.54!IRF6;;chr8:80680024..80680046,-!p2@HEY1!0.81!6.33!HEY1;;chr15:96869255..96869291,+!p6@NR2F2!0.79!9.76!NR2F2;;chr16:73093174..73093209,-!p3@ZFHX3!0.79!7.12!ZFHX3;;chr2:16080659..16080685,+!p1@MYCN!0.78!5.01!MYCN;;chr9:110250697..110250738,-!p2@KLF4!0.77!5.80!KLF4;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.42!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.75!71.48!PCBP4;;chr17:38465413..38465438,+!p5@RARA!0.75!7.65!RARA;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.91!MSX2;;chr7:27153454..27153469,-!p2@HOXA3!0.74!4.48!HOXA3;;chr1:209979449..209979460,-!p3@IRF6!0.74!4.48!IRF6;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.18!EPAS1;;chr15:96869292..96869320,+!p15@NR2F2!0.72!6.33!NR2F2;;chr1:38512457..38512474,-!p1@POU3F1!0.72!4.75!POU3F1;;chr9:110252035..110252057,-!p1@KLF4!0.71!74.91!KLF4;;chr2:60780607..60780624,-!p2@BCL11A!0.69!13.19!BCL11A;;chr3:52001396..52001425,-!p4@PCBP4!0.69!7.39!PCBP4;;chr3:52001426..52001447,-!p3@PCBP4!0.68!11.87!PCBP4;;chr10:77161650..77161661,-!p4@ZNF503!0.68!5.54!ZNF503;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.75!TBX18;;chrX:56258844..56258882,+!p1@KLF8!0.67!5.28!KLF8;;chr10:77161504..77161530,-!p1@ZNF503!0.66!54.86!ZNF503;;chr11:113930291..113930339,+!p2@ZBTB16!0.66!6.33!ZBTB16;;chr5:72744445..72744466,-!p2@FOXD1!0.66!6.33!FOXD1;;chr16:73082004..73082033,-!p5@ZFHX3!0.66!6.07!ZFHX3;;chr15:96869511..96869525,+!p16@NR2F2!0.65!3.96!NR2F2;;chr8:102504932..102504952,+!p4@GRHL2!0.65!3.43!GRHL2;;chr2:46524537..46524553,+!p1@EPAS1!0.63!388.00!EPAS1;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.16!MLLT11;;chr20:2673383..2673441,+!p1@EBF4!0.63!5.54!EBF4;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.22!HOXC4;;chr5:72743793..72743855,-!p4@FOXD1!0.63!3.96!FOXD1;;chr13:73633131..73633149,+!p1@KLF5!0.62!40.62!KLF5;;chr6:19837592..19837621,+!p1@ID4!0.62!22.95!ID4;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.77!ZNF503;;chr12:54422217..54422239,+!p3@HOXC6!0.62!3.17!HOXC6;;chr6:10415263..10415274,-!p8@TFAP2A!0.62!3.17!TFAP2A;;chr1:164528410..164528428,+!p1@PBX1!0.60!26.64!PBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.60!12.13!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.60!6.86!BHLHE40;;chr16:29817841..29817865,+!p1@MAZ!0.59!76.23!MAZ;;chr1:59249732..59249749,-!p2@JUN!0.59!42.47!JUN;;chr17:45928443..45928473,-!p2@SP6!0.59!2.90!SP6;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.90!ZFY;;chr6:35464817..35464894,-!p1@TEAD3!0.58!52.23!TEAD3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.57!361.10!ZFP36L2;;chr10:3827389..3827408,-!p1@KLF6!0.57!258.23!KLF6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!239.76!TAX1BP3;;chr16:29817789..29817838,+!p2@MAZ!0.57!45.10!MAZ;;chr17:61920280..61920343,-!p2@SMARCD2!0.57!32.44!SMARCD2;;chr17:41622834..41622883,-!p6@ETV4!0.57!3.43!ETV4;;chrX:106960285..106960299,-!p1@TSC22D3!0.56!89.42!TSC22D3;;chr17:70117153..70117174,+!p1@SOX9!0.56!33.50!SOX9;;chr12:53625966..53626012,-!p2@RARG!0.56!8.18!RARG;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.59!ZNF503;;chr11:113930401..113930422,+!p3@ZBTB16!0.56!2.64!ZBTB16;;chr20:18038486..18038520,-!p2@OVOL2!0.56!2.64!OVOL2;;chr4:57547454..57547469,-!p1@HOPX!0.56!2.64!HOPX;;chr14:69259772..69259790,-!p1@ZFP36L1!0.55!327.86!ZFP36L1;;chr12:124873357..124873401,-!p1@NCOR2!0.55!37.45!NCOR2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.18!HOXB2;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.54!HOXA1;;chr17:41622925..41622976,-!p3@ETV4!0.55!4.22!ETV4;;chr3:42947600..42947680,+!p1@ZNF662!0.55!3.96!ZNF662;;chr2:60778035..60778060,-!p4@BCL11A!0.55!3.17!BCL11A;;chr19:19516464..19516492,+!p4@GATAD2A!0.54!15.30!GATAD2A;;chr8:102217679..102217719,-!p2@ZNF706!0.54!10.29!ZNF706;;chrX:106959661..106959763,-!p4@TSC22D3!0.54!8.70!TSC22D3;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.22!ETV4;;chr6:126240356..126240379,+!p7@NCOA7!0.54!3.17!NCOA7;;chr3:12330560..12330579,+!p1@PPARG!0.53!2.90!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.53!2.90!FOXP1;;chr22:24093154..24093183,-!p2@ZNF70!0.53!2.37!ZNF70;;chr2:5832493..5832507,+!p2@SOX11!0.53!2.37!SOX11;;chr16:67881647..67881663,-!p3@CENPT!0.53!2.37!CENPT;;chr10:8097321..8097348,+!p4@GATA3!0.53!2.37!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.37!PKNOX2;;chr2:60780753..60780800,-!p1@BCL11A!0.52!14.24!BCL11A;;chr12:66218598..66218645,+!p2@HMGA2!0.52!13.45!HMGA2;;chr2:25475120..25475176,-!p2@DNMT3A!0.52!3.43!DNMT3A;;chr20:42295745..42295765,+!p1@MYBL2!0.51!48.27!MYBL2;;chr11:61520075..61520136,+!p1@C11orf9!0.51!5.54!C11orf9;;chr3:5021113..5021180,+!p1@BHLHE40!0.50!203.63!BHLHE40;;chr1:59249707..59249727,-!p1@JUN!0.50!120.81!JUN;;chr3:150126759..150126784,+!p2@TSC22D2!0.50!12.66!TSC22D2;;chr17:46622070..46622109,-!p1@HOXB2!0.50!5.80!HOXB2;;chr19:4066890..4066903,-!p6@ZBTB7A!0.50!3.96!ZBTB7A;;chr5:72744562..72744573,-!p3@FOXD1!0.50!2.90!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.49!2.11!MSX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.49!2.11!TFAP2A;;chr16:73093210..73093223,-!p13@ZFHX3!0.49!2.11!ZFHX3;;chr16:86600870..86600921,+!p2@FOXC2!0.49!2.11!FOXC2;;chr4:149366111..149366128,-!p7@NR3C2!0.49!2.11!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.49!2.11!HOPX;;chr10:8097295..8097320,+!p6@GATA3!0.49!2.11!GATA3;;chr5:176738887..176738934,-!p1@MXD3!0.48!17.67!MXD3;;chr3:12329358..12329393,+!p3@PPARG!0.48!6.07!PPARG;;chr6:31869828..31869880,-!p1@ZBTB12!0.48!4.48!ZBTB12;;chr11:46299186..46299195,+!p3@CREB3L1!0.48!2.37!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.43!HMGA2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.47!2.64!L3MBTL4;;chr1:33721900..33721921,+!p2@ZNF362!0.46!5.80!ZNF362;;chr19:7580944..7581031,+!p1@ZNF358!0.45!77.55!ZNF358;;chr19:45908286..45908291,-!p3@PPP1R13L!0.45!1.85!PPP1R13L;;chr19:46806868..46806883,+!p3@HIF3A!0.45!1.85!HIF3A;;chr7:27142290..27142310,-!p1@HOXA2!0.45!1.85!HOXA2;;chr2:16080635..16080650,+!p4@MYCN!0.45!1.85!MYCN;;chr22:42229246..42229270,+!p2@SREBF2!0.44!30.86!SREBF2;;chr15:31619326..31619390,+!p2@KLF13!0.44!28.75!KLF13;;chr2:85360499..85360598,+!p1@TCF7L1!0.44!13.45!TCF7L1;;chr12:66218255..66218304,+!p3@HMGA2!0.44!6.07!HMGA2;;chr2:113993052..113993097,-!p2@PAX8!0.44!5.01!PAX8;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.44!3.43!MEIS3P1;;chr6:85474299..85474324,-!p1@TBX18!0.43!3.69!TBX18;;chr12:66218573..66218596,+!p7@HMGA2!0.43!2.90!HMGA2;;chr6:32157947..32157992,-!p1@PBX2!0.42!40.09!PBX2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.42!26.38!TAX1BP3;;chr14:62162258..62162269,+!p2@HIF1A!0.42!22.42!HIF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.42!5.54!NCOA7;;chr17:41623009..41623053,-!p4@ETV4!0.42!3.17!ETV4;;chr3:32023232..32023273,+!p1@ZNF860!0.42!2.64!ZNF860;;chr16:73081974..73082002,-!p7@ZFHX3!0.42!2.11!ZFHX3;;chr7:137686791..137686821,-!p1@CREB3L2!0.41!67.26!CREB3L2;;chr2:101436564..101436647,+!p1@NPAS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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002536;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11694-123A2
 |is_a=EFO:0002091;;FF:0000009
 |is_obsolete=
+|library_id=CNhs12125
+|library_id_phase_based=2:CNhs12125
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11694
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGAAA.11694
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11694
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGAAA.11694
 |name=Amniotic Epithelial Cells, donor3
 |namespace=FANTOM5
@@ Line 45: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12125,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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@@ Line 61: / Line 81: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11694-123A2;search_select_hide=table117:FF:11694-123A2
 }}

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