FFCP PHASE1:Hg19::chr6:30685214..30685230,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:30685214..30685230,-
|short_description=p2@MDC1
|description=CAGE_peak_2_at_MDC1_5end
|association_with_transcript=0bp_to_ENST00000425072_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9656 | |EntrezGene=9656 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21163 | |HGNC=21163 | ||
|TSSclassifier=strong | |||
|UniProt=A2AB07 | |UniProt=A2AB07 | ||
|association_with_transcript=0bp_to_ENST00000425072_5end | |||
|cluster_id=chr6:30685214..30685230,- | |||
|description=CAGE_peak_2_at_MDC1_5end | |||
|id=chr6:30685214..30685230,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.18e-16!86;UBERON:0001017!7.61e-16!82;UBERON:0000073!2.23e-15!94;UBERON:0001016!2.23e-15!94;UBERON:0002346!1.96e-13!90;UBERON:0003075!7.28e-13!86;UBERON:0007284!7.28e-13!86;UBERON:0001049!1.05e-12!57;UBERON:0005068!1.05e-12!57;UBERON:0006241!1.05e-12!57;UBERON:0007135!1.05e-12!57;UBERON:0000924!1.97e-12!173;UBERON:0006601!1.97e-12!173;UBERON:0000955!3.19e-12!69;UBERON:0006238!3.19e-12!69;UBERON:0004121!7.17e-12!169;UBERON:0002616!1.04e-11!59;UBERON:0003056!5.21e-11!61;UBERON:0002780!1.57e-09!41;UBERON:0001890!1.57e-09!41;UBERON:0006240!1.57e-09!41;UBERON:0000153!2.18e-09!129;UBERON:0007811!2.18e-09!129;UBERON:0003080!3.94e-09!42;UBERON:0000033!7.11e-09!123;UBERON:0000956!7.72e-08!25;UBERON:0000203!7.72e-08!25;UBERON:0001950!1.32e-07!20;UBERON:0001893!1.80e-07!34;UBERON:0002020!2.47e-07!34;UBERON:0003528!2.47e-07!34;UBERON:0002791!2.79e-07!33;UBERON:0002619!4.73e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;2.37e-08;25!UBERON:0000203;2.37e-08;25!UBERON:0000073;3.53e-08;53!UBERON:0002616;3.53e-08;53!UBERON:0001950;9.07e-08;20!UBERON:0002780;1.59e-07;41!UBERON:0001890;1.59e-07;41!UBERON:0002619;1.84e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.79e-17,81;UBERON:0001016,1.38e-15,89;UBERON:0002346,9.60e-15,86;UBERON:0001049,2.07e-14,56;UBERON:0005068,2.07e-14,56;UBERON:0006241,2.07e-14,56;UBERON:0007135,2.07e-14,56;UBERON:0003075,2.31e-14,82;UBERON:0007284,2.31e-14,82;UBERON:0000073,6.30e-14,53;UBERON:0002616,6.30e-14,53;UBERON:0010371,1.16e-13,104;UBERON:0000955,4.53e-13,68;UBERON:0006238,4.53e-13,68;UBERON:0003056,9.02e-13,61;UBERON:0004121,2.52e-12,171;UBERON:0000924,2.52e-12,171;UBERON:0006601,2.52e-12,171;UBERON:0002780,2.30e-10,41;UBERON:0001890,2.30e-10,41;UBERON:0003080,2.30e-10,41;UBERON:0006240,2.30e-10,41;UBERON:0010314,1.55e-08,132;UBERON:0000956,3.35e-08,25;UBERON:0000203,3.35e-08,25;UBERON:0001893,4.69e-08,34;UBERON:0003528,6.68e-08,34;UBERON:0002020,6.68e-08,34;UBERON:0001950,1.53e-07,20;UBERON:0002619,2.57e-07,22;UBERON:0002791,2.70e-07,32;UBERON:0001869,4.61e-07,32 | |||
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| ||
|short_description=p2@MDC1 | |||
}} | }} |
Latest revision as of 17:58, 17 September 2015
Short description: | p2@MDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000425072_5end |
EntrezGene: | MDC1 |
HGNC: | 21163 |
UniProt: | A2AB07 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.79e-17 | 81 |
nervous system | 1.38e-15 | 89 |
neurectoderm | 9.60e-15 | 86 |
neural tube | 2.07e-14 | 56 |
neural rod | 2.07e-14 | 56 |
future spinal cord | 2.07e-14 | 56 |
neural keel | 2.07e-14 | 56 |
neural plate | 2.31e-14 | 82 |
presumptive neural plate | 2.31e-14 | 82 |
regional part of nervous system | 6.30e-14 | 53 |
regional part of brain | 6.30e-14 | 53 |
ecto-epithelium | 1.16e-13 | 104 |
brain | 4.53e-13 | 68 |
future brain | 4.53e-13 | 68 |
pre-chordal neural plate | 9.02e-13 | 61 |
ectoderm-derived structure | 2.52e-12 | 171 |
ectoderm | 2.52e-12 | 171 |
presumptive ectoderm | 2.52e-12 | 171 |
regional part of forebrain | 2.30e-10 | 41 |
forebrain | 2.30e-10 | 41 |
anterior neural tube | 2.30e-10 | 41 |
future forebrain | 2.30e-10 | 41 |
structure with developmental contribution from neural crest | 1.55e-08 | 132 |
cerebral cortex | 3.35e-08 | 25 |
pallium | 3.35e-08 | 25 |
telencephalon | 4.69e-08 | 34 |
brain grey matter | 6.68e-08 | 34 |
gray matter | 6.68e-08 | 34 |
neocortex | 1.53e-07 | 20 |
regional part of cerebral cortex | 2.57e-07 | 22 |
regional part of telencephalon | 2.70e-07 | 32 |
cerebral hemisphere | 4.61e-07 | 32 |