FFCP PHASE1:Hg19::chr6:41909466..41909520,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:41909466..41909520,-
|short_description=p1@CCND3
|description=CAGE_peak_1_at_CCND3_5end
|association_with_transcript=0bp_to_ENST00000414200,ENST00000510058...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=896 | |EntrezGene=896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1585 | |HGNC=1585 | ||
|TSSclassifier=strong | |||
|UniProt=E9PAS4 | |UniProt=E9PAS4 | ||
|association_with_transcript=0bp_to_ENST00000414200,ENST00000510058_5end | |||
|cluster_id=chr6:41909466..41909520,- | |||
|coexpression_cluster_id=C4603 | |||
|description=CAGE_peak_1_at_CCND3_5end | |||
|id=chr6:41909466..41909520,- | |||
|ontology_enrichment_celltype=CL:0000763!2.60e-21!112;CL:0000049!2.60e-21!112;CL:0002371!2.74e-15!591;CL:0000144!8.80e-15!625;CL:0000048!3.25e-13!430;CL:0000723!5.81e-13!436;CL:0000003!8.90e-13!722;CL:0000766!1.26e-12!76;CL:0000037!1.14e-11!172;CL:0000566!1.14e-11!172;CL:0000988!1.18e-11!182;CL:0000548!2.36e-11!679;CL:0000004!2.36e-11!679;CL:0000255!2.36e-11!679;CL:0000012!3.26e-11!682;CL:0000839!3.45e-11!70;CL:0000034!3.49e-11!444;CL:0002194!2.75e-10!63;CL:0000576!2.75e-10!63;CL:0000040!2.75e-10!63;CL:0000559!2.75e-10!63;CL:0000557!5.49e-10!71;CL:0002032!6.43e-10!165;CL:0000837!6.43e-10!165;CL:0002009!9.12e-10!65;CL:0000134!1.31e-09!358;CL:0002057!1.34e-09!42;CL:0000860!1.53e-09!45;CL:0000219!3.50e-09!390;CL:0002320!4.16e-09!365;CL:0000063!3.64e-07!578;CL:0000222!6.08e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000763;7.51e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.45e-21,108;CL:0000049,1.45e-21,108;CL:0000766,7.64e-13,72;CL:0000048,1.16e-12,427;CL:0000723,2.06e-12,433;CL:0000037,1.22e-11,168;CL:0000839,2.16e-11,66;CL:0000988,2.40e-11,177;CL:0000034,1.12e-10,441;CL:0000473,1.13e-10,48;CL:0000234,1.13e-10,48;CL:0002194,1.68e-10,59;CL:0000576,1.68e-10,59;CL:0000040,1.68e-10,59;CL:0000559,1.68e-10,59;CL:0000557,3.85e-10,67;CL:0002009,6.03e-10,61;CL:0002032,6.99e-10,161;CL:0000837,6.99e-10,161;CL:0000860,1.34e-09,42;CL:0002057,1.34e-09,42;CL:0000134,3.24e-09,354;CL:0000219,8.59e-09,386;CL:0002320,1.01e-08,361;CL:0000222,4.48e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002057;3.53e-07;42!CL:0000049;5.46e-07;108 | |||
|ontology_enrichment_disease=DOID:1240!1.07e-15!39;DOID:2531!5.38e-14!51;DOID:0060083!5.38e-14!51;DOID:8692!1.21e-13!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.73e-13;31!DOID:1240;1.16e-12;39!DOID:2531;3.70e-09;51!DOID:0060083;3.70e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,1.07e-15,39;DOID:2531,5.38e-14,51;DOID:0060083,5.38e-14,51;DOID:8692,1.21e-13,31 | |||
|ontology_enrichment_uberon=UBERON:0003081!3.26e-21!216;UBERON:0002193!5.68e-15!112;UBERON:0002390!8.22e-15!102;UBERON:0003061!8.22e-15!102;UBERON:0002204!1.30e-10!167;UBERON:0002371!1.06e-09!80;UBERON:0001474!1.37e-09!86;UBERON:0004535!4.67e-09!110;UBERON:0002384!6.30e-09!375;UBERON:0001009!9.24e-09!113;UBERON:0002405!1.26e-08!115;UBERON:0004765!6.66e-08!101;UBERON:0001434!6.66e-08!101;UBERON:0000926!9.28e-08!448;UBERON:0004120!9.28e-08!448;UBERON:0006603!9.28e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,6.99e-22,203;UBERON:0002193,4.30e-15,108;UBERON:0002390,5.77e-15,98;UBERON:0003061,5.77e-15,98;UBERON:0000926,6.12e-15,315;UBERON:0004120,6.12e-15,315;UBERON:0006603,6.12e-15,315;UBERON:0002405,1.04e-10,93;UBERON:0002371,8.28e-10,76;UBERON:0002204,1.04e-09,167;UBERON:0001474,1.13e-09,82;UBERON:0004535,3.45e-09,109;UBERON:0001009,6.93e-09,112;UBERON:0002384,1.51e-08,371;UBERON:0004765,7.28e-08,90;UBERON:0001434,4.26e-07,100 | |||
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| ||
|short_description=p1@CCND3 | |||
}} | }} |
Latest revision as of 19:23, 18 September 2015
Short description: | p1@CCND3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCND3_5end |
Coexpression cluster: | C4603_non_acute_Hodgkin_chronic_Placental_thymus_rhabdomyosarcoma |
Association with transcript: | 0bp_to_ENST00000414200, ENST00000510058_5end |
EntrezGene: | CCND3 |
HGNC: | 1585 |
UniProt: | E9PAS4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.45e-21 | 108 |
common myeloid progenitor | 1.45e-21 | 108 |
myeloid leukocyte | 7.64e-13 | 72 |
multi fate stem cell | 1.16e-12 | 427 |
somatic stem cell | 2.06e-12 | 433 |
hematopoietic stem cell | 1.22e-11 | 168 |
myeloid lineage restricted progenitor cell | 2.16e-11 | 66 |
hematopoietic cell | 2.40e-11 | 177 |
stem cell | 1.12e-10 | 441 |
defensive cell | 1.13e-10 | 48 |
phagocyte | 1.13e-10 | 48 |
monopoietic cell | 1.68e-10 | 59 |
monocyte | 1.68e-10 | 59 |
monoblast | 1.68e-10 | 59 |
promonocyte | 1.68e-10 | 59 |
granulocyte monocyte progenitor cell | 3.85e-10 | 67 |
macrophage dendritic cell progenitor | 6.03e-10 | 61 |
hematopoietic oligopotent progenitor cell | 6.99e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.99e-10 | 161 |
classical monocyte | 1.34e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.34e-09 | 42 |
mesenchymal cell | 3.24e-09 | 354 |
motile cell | 8.59e-09 | 386 |
connective tissue cell | 1.01e-08 | 361 |
mesodermal cell | 4.48e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 6.99e-22 | 203 |
hemolymphoid system | 4.30e-15 | 108 |
hematopoietic system | 5.77e-15 | 98 |
blood island | 5.77e-15 | 98 |
mesoderm | 6.12e-15 | 315 |
mesoderm-derived structure | 6.12e-15 | 315 |
presumptive mesoderm | 6.12e-15 | 315 |
immune system | 1.04e-10 | 93 |
bone marrow | 8.28e-10 | 76 |
musculoskeletal system | 1.04e-09 | 167 |
bone element | 1.13e-09 | 82 |
cardiovascular system | 3.45e-09 | 109 |
circulatory system | 6.93e-09 | 112 |
connective tissue | 1.51e-08 | 371 |
skeletal element | 7.28e-08 | 90 |
skeletal system | 4.26e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
leukemia | 1.07e-15 | 39 |
hematologic cancer | 5.38e-14 | 51 |
immune system cancer | 5.38e-14 | 51 |
myeloid leukemia | 1.21e-13 | 31 |