FFCP PHASE1:Hg19::chr6:45390599..45390662,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:45390599..45390662,+
|short_description=p11@RUNX2
|description=CAGE_peak_11_at_RUNX2_5end
|association_with_transcript=150bp_to_L40992_5end
|EntrezGene=86...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=860 | |EntrezGene=860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10472 | |HGNC=10472 | ||
|TSSclassifier=strong | |||
|UniProt=Q13950 | |UniProt=Q13950 | ||
|association_with_transcript=150bp_to_L40992_5end | |||
|cluster_id=chr6:45390599..45390662,+ | |||
|coexpression_cluster_id=C44 | |||
|description=CAGE_peak_11_at_RUNX2_5end | |||
|id=chr6:45390599..45390662,+ | |||
|ontology_enrichment_celltype=CL:0000037!5.52e-18!172;CL:0000566!5.52e-18!172;CL:0000988!2.82e-17!182;CL:0000738!8.28e-17!140;CL:0000763!2.58e-16!112;CL:0000049!2.58e-16!112;CL:0000766!1.32e-15!76;CL:0002032!1.35e-15!165;CL:0000837!1.35e-15!165;CL:0000557!5.37e-14!71;CL:0000839!5.46e-14!70;CL:0002031!1.31e-12!124;CL:0002057!1.99e-12!42;CL:0002194!1.68e-11!63;CL:0000576!1.68e-11!63;CL:0000040!1.68e-11!63;CL:0000559!1.68e-11!63;CL:0000860!1.85e-11!45;CL:0002087!2.00e-11!119;CL:0002009!2.81e-11!65;CL:0000134!3.36e-10!358;CL:0002320!1.30e-09!365;CL:0000219!2.68e-09!390;CL:0000791!3.59e-07!18;CL:0000789!3.59e-07!18;CL:0002420!3.59e-07!18;CL:0002419!3.59e-07!18;CL:0000790!3.59e-07!18;CL:0000084!7.36e-07!25;CL:0000827!7.36e-07!25;CL:0000048!7.73e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000084;6.94e-08;25!CL:0000791;6.57e-07;18!CL:0000789;6.57e-07;18!CL:0002419;6.57e-07;18!CL:0000094;7.53e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.93e-21,168;CL:0000988,4.10e-21,177;CL:0000738,2.27e-19,136;CL:0002032,8.19e-17,161;CL:0000837,8.19e-17,161;CL:0000763,1.08e-14,108;CL:0000049,1.08e-14,108;CL:0000766,1.03e-12,72;CL:0002087,7.53e-11,115;CL:0002031,4.10e-10,120;CL:0000557,4.76e-09,67;CL:0000839,2.30e-08,66;CL:0000084,4.31e-08,25;CL:0000827,4.31e-08,25;CL:0000134,7.42e-08,354;CL:0000219,2.38e-07,386;CL:0002320,2.44e-07,361;CL:0002194,4.33e-07,59;CL:0000576,4.33e-07,59;CL:0000040,4.33e-07,59;CL:0000559,4.33e-07,59;CL:0000791,4.84e-07,18;CL:0000789,4.84e-07,18;CL:0002420,4.84e-07,18;CL:0002419,4.84e-07,18;CL:0000790,4.84e-07,18;CL:0000094,6.23e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;6.57e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.23e-21!102;UBERON:0003061!4.23e-21!102;UBERON:0002193!1.51e-17!112;UBERON:0001474!3.00e-14!86;UBERON:0002371!9.96e-13!80;UBERON:0004765!5.16e-12!101;UBERON:0001434!5.16e-12!101;UBERON:0002384!9.11e-10!375;UBERON:0000178!1.70e-09!15;UBERON:0000179!1.70e-09!15;UBERON:0000463!1.70e-09!15;UBERON:0002405!1.13e-07!115;UBERON:0002204!6.82e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.71e-15;15!UBERON:0000179;3.71e-15;15!UBERON:0000463;3.71e-15;15!UBERON:0002390;1.37e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,8.24e-17,98;UBERON:0003061,8.24e-17,98;UBERON:0000178,1.09e-15,15;UBERON:0000179,1.09e-15,15;UBERON:0000463,1.09e-15,15;UBERON:0002193,4.68e-15,108;UBERON:0001474,4.19e-11,82;UBERON:0004765,2.48e-09,90;UBERON:0002371,1.00e-08,76;UBERON:0001434,1.46e-07,100;UBERON:0002384,1.96e-07,371;UBERON:0002405,3.87e-07,93 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0.631719873426831,0,0.245733936501509,0.697801167972428,0.436882744260345,0.263766978228454,0.247532705920093,0,0,0,0.730310090387373,0.487932798790507,1.35433163884467,1.02000345622126,0.626909442956176,0.286235987131057,0.273748850145768,0.753255837568817,0,0,0,2.75354993794233,2.68680578668049,2.94150634300544,0,0,0,0,0,6.45920966536664,0.553995408531877,1.00272223735071,0.434021741431704,0.223915474239924,1.29557466407592,0.257575567634187,0.581592955118259,1.51150377475524,0.485168122375632,0.697287110717054,0.411167888021826,0.929119112685311,0.863077176966451,0.512321413058201,1.18241114944293,0.689491361473237,1.93645405075148,4.06279459783025,1.12945403725563,1.09162460023138,1.12361742222542,1.22433556948361,0.962787081228281,0.639337125799041,0.989553900560148,0.598390972864896,2.55734850319616,1.45104619314292,0,0.622822248995575,1.25624332628372,1.0429658368404,1.08594422352558,0.605399502633369,1.47311054395026,0.949387162322653,0.211255286311942,0.850417199860174,0.628975936525128,1.34794357375794,0.600707571366025,1.12507910687956,0.855038231223746,0.59675003159727,0.365328307529268,0,0.546138611262131,0.889509253863555,0,0,0,0,0,0,0.587237189370939,0,9.25199300053181,5.60508562981536,3.423993102076,1.180258620683,0.786021525498329,2.67281948699362,0.334372990781356,0,0,1.94826728407911,6.23898558556972,1.47302953737419,2.65840673500345,3.24964636518019,1.28091319725675,1.95089021339817,1.15106533222573,2.21080014228679,0.289803085735052,0,0.535081656179426,0,4.41906436520508,2.29932296161153,0.68725489096526,3.54227568827304,0.95569624297229,1.30216690771284,0.950452044448374,3.46322773878877,1.66382594500744,0,3.55165878066025,0.821127996921047,6.24980903996671,3.4767225451856,0.868946423296794,2.43806866313962,0.670700859703636,0.12786256184353,0,0.50133791063589,0.144846518960824,0.795285947051099,0,0.945348171640679,1.10864698731282,1.22968699970376,0.0654895377488563,0,0,0,0.696518949197069,0.132957960518865,104.220402821434,49.191562327091,102.893727868289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0.560677600142307,0,0,0.622422070799533,0.269421344139376,0.163461903113459,0.151357427644931,0.576175924479999,0.70296429550139,0,0,0.298897361103602,0.822041490506354,1.61872944368132,0.280901613404497,0.204154171254893,1.22834317311768,0.413303124703062,0,0.247266929278557,0,0,0.673344455816265,0.750711119231785,0,0.438977620880838,0.612975591598039,0.300476117813194,0.226864366320042,0.358779271377724,0.213557388818567,0.211931901159562,0.300091096084402,0.309157587715317,0.515281080091258,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0.460249493211497,0.323292113637624,0.355009592516614,0.705264687593482,0.339121184620975,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514703430895577,0,0,0.100528972411631,0.0925884451585296,0,0,0,0.231860809950154,0.939269553886573,0,0,0,0,0,0,0,0.297262324577456,0,0.503946384596579,0.425325291727159,0.268675568108545,0,0,0.985326475791887,0.792435906119034,4.35389042635621,10.3766366460212,4.79721247020244,0.317489471460845,0,0,0,0,0,0,1.23344192779897,0.43596006883328,0.4400297149257,0.129271715757778,0,0.845302752556,0.531876233169741,1.04007436911366,0.514414748524284,0,0.266422179016099,0.714889968290738,0,1.64648067356154,0.325736184293735,0.355391948742546,0,0.602878754119172,0,0,0,0,2.10833939483032,0,0,0,0,0,0.179060963239896,0.896681151948218,5.51686128565396,2.37190332345469,0.77005821767849,0.254094624222463,0,0,0,0,2.24702107184155,2.99161459204025,1.24324654030811,0.36807447515742,0,0,0.415941723061614,0.892144943985809,0.788512075169673,0.819989904948992,0.300946099727719,0,0,1.32845119707087,0.368738337083406,0.173767228936166,0.391602314925481,0,3.3082884179662,2.15714200818617,1.921096040462,0,0,0.604780586659361,0,0,0.561320188866147,0,0.511707249066704,0.160853921143607,0,0.154209693802656,0.177561725313127,0.246381468041427,0.519254429183621,0.348631135379878,0,0.40101294060657,0.276242966807689,0.34444334449382,0.364182336013434,0.655622074797121,0.451199612907412,0.231046011313244,0,0,0.527758144464379,0,0,0.215915916102139,0,0.270946437543853,0,1.01950509218015,0.831076008928724,1.34324852833307,0.438519753291869,0.522870902049801,0.512900250232778,0.328014645699706,0,0.309123034943167,2.93022287418699,2.39277549769705,0,0,0,1.25671933779759,0.308097234229289,0.15350367472613,0.413509717453592,0.429680979473094,0.580066775656914,0.255679882248303,0.712256285173899,0,0.384380134730212,0.638063562472921,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0.143124886741991,2.232950216158,1.2655176988749,0.38126038784765,0.255897791311334,0,0,0,0.719489830333259,0.54907405947211,0.235624804691373,0.202182481573316,0,0,0.48763373908959,0,0,0.136499911407986,0.424216295861138,0,0,0,0,0,0,0,0,0,1.86434757865267,1.08073945114433,0.3566710514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| ||
|short_description=p11@RUNX2 | |||
}} | }} |
Latest revision as of 01:31, 19 September 2015
Short description: | p11@RUNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_RUNX2_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | 150bp_to_L40992_5end |
EntrezGene: | RUNX2 |
HGNC: | 10472 |
UniProt: | Q13950 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.93e-21 | 168 |
hematopoietic cell | 4.10e-21 | 177 |
leukocyte | 2.27e-19 | 136 |
hematopoietic oligopotent progenitor cell | 8.19e-17 | 161 |
hematopoietic multipotent progenitor cell | 8.19e-17 | 161 |
myeloid cell | 1.08e-14 | 108 |
common myeloid progenitor | 1.08e-14 | 108 |
myeloid leukocyte | 1.03e-12 | 72 |
nongranular leukocyte | 7.53e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 4.10e-10 | 120 |
granulocyte monocyte progenitor cell | 4.76e-09 | 67 |
myeloid lineage restricted progenitor cell | 2.30e-08 | 66 |
T cell | 4.31e-08 | 25 |
pro-T cell | 4.31e-08 | 25 |
mesenchymal cell | 7.42e-08 | 354 |
motile cell | 2.38e-07 | 386 |
connective tissue cell | 2.44e-07 | 361 |
monopoietic cell | 4.33e-07 | 59 |
monocyte | 4.33e-07 | 59 |
monoblast | 4.33e-07 | 59 |
promonocyte | 4.33e-07 | 59 |
mature alpha-beta T cell | 4.84e-07 | 18 |
alpha-beta T cell | 4.84e-07 | 18 |
immature T cell | 4.84e-07 | 18 |
mature T cell | 4.84e-07 | 18 |
immature alpha-beta T cell | 4.84e-07 | 18 |
granulocyte | 6.23e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 8.24e-17 | 98 |
blood island | 8.24e-17 | 98 |
blood | 1.09e-15 | 15 |
haemolymphatic fluid | 1.09e-15 | 15 |
organism substance | 1.09e-15 | 15 |
hemolymphoid system | 4.68e-15 | 108 |
bone element | 4.19e-11 | 82 |
skeletal element | 2.48e-09 | 90 |
bone marrow | 1.00e-08 | 76 |
skeletal system | 1.46e-07 | 100 |
connective tissue | 1.96e-07 | 371 |
immune system | 3.87e-07 | 93 |