FFCP PHASE1:Hg19::chr7:142180978..142181006,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr7:142180978..142181006,-
|short_description=p1@TRBV6-5
|description=CAGE_peak_1_at_TRBV6-5_5end
|association_with_transcript=9bp_to_ENST00000390368,uc011krz....") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12230 | |HGNC=12230 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=9bp_to_ENST00000390368,uc011krz.1_5end | |||
|cluster_id=chr7:142180978..142181006,- | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_1_at_TRBV6-5_5end | |||
|id=chr7:142180978..142181006,- | |||
|ontology_enrichment_celltype=CL:0000791!2.21e-30!18;CL:0000789!2.21e-30!18;CL:0002420!2.21e-30!18;CL:0002419!2.21e-30!18;CL:0000790!2.21e-30!18;CL:0000084!1.18e-25!25;CL:0000827!1.18e-25!25;CL:0000625!8.22e-22!11;CL:0000838!4.01e-13!52;CL:0000542!9.39e-13!53;CL:0000051!9.39e-13!53;CL:0000738!1.12e-12!140;CL:0000624!2.68e-12!6;CL:0002087!1.93e-11!119;CL:0000037!6.67e-09!172;CL:0000566!6.67e-09!172;CL:0002031!2.90e-08!124;CL:0000988!7.70e-08!182;CL:0002032!9.55e-08!165;CL:0000837!9.55e-08!165;CL:0000898!3.12e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.23e-52;18!CL:0000789;1.23e-52;18!CL:0002419;1.23e-52;18!CL:0000084;1.58e-41;25!CL:0000625;3.94e-37;11!CL:0000624;2.15e-20;6!CL:0000542;1.88e-12;53!CL:0000898;1.69e-11;3!CL:0000226;2.70e-10;3!CL:0000842;2.70e-10;3!CL:0000623;4.71e-10;3!CL:0000815;2.58e-08;2!CL:0000792;2.58e-08;2!CL:0002677;2.58e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.29e-52,18;CL:0000789,1.29e-52,18;CL:0002420,1.29e-52,18;CL:0002419,1.29e-52,18;CL:0000790,1.29e-52,18;CL:0000084,1.64e-41,25;CL:0000827,1.64e-41,25;CL:0000625,4.01e-37,11;CL:0000838,4.13e-24,52;CL:0000542,1.50e-23,53;CL:0000051,1.50e-23,53;CL:0000624,2.23e-20,6;CL:0002087,4.49e-12,115;CL:0000898,1.66e-11,3;CL:0000226,2.61e-10,3;CL:0000842,2.61e-10,3;CL:0000738,3.06e-10,136;CL:0000623,5.02e-10,3;CL:0000825,5.02e-10,3;CL:0000815,2.54e-08,2;CL:0000792,2.54e-08,2;CL:0002677,2.54e-08,2;CL:0002031,2.67e-08,120;CL:0000037,3.56e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;1.23e-52;18!CL:0000051;1.88e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.08e-13!15;UBERON:0000179!1.08e-13!15;UBERON:0000463!1.08e-13!15;UBERON:0007023!1.38e-10!115;UBERON:0004177!2.77e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.01e-24;15!UBERON:0000179;8.01e-24;15!UBERON:0000463;8.01e-24;15!UBERON:0002390;6.49e-16;32!UBERON:0002193;5.44e-10;42!UBERON:0002370;1.03e-08;2!UBERON:0005058;1.03e-08;2!UBERON:0009113;1.03e-08;2!UBERON:0004177;4.85e-07;5!UBERON:0005057;4.85e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.72e-24,15;UBERON:0000179,6.72e-24,15;UBERON:0000463,6.72e-24,15;UBERON:0002370,5.20e-09,4;UBERON:0005058,5.20e-09,4;UBERON:0009113,5.20e-09,4;UBERON:0003295,5.20e-09,4;UBERON:0005562,5.20e-09,4;UBERON:0004177,2.35e-08,7;UBERON:0005057,2.35e-08,7 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,1.15148819429164,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.434021741431704,0.223915474239924,1.6194683300949,0.257575567634187,0,0.377875943688809,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,6.09800287352883,5.50215067848831,6.7848494669838,19.226446969928,19.5553359980154,16.5706732007157,27.2757419771076,14.149128024417,23.568472597987,16.6150420937716,18.9562704635511,10.7596708569567,11.705341280389,39.4650971048823,63.2841540729593,42.3112505173177,28.6193066902777,14.9822863730239,18.8163942848958,17.5629481181228,15.7120402376788,20.9612741744404,11.8919255249166,22.6181444170109,22.1368374311182,44.6712460890736,6.17357988218868,6.2713439465665,33.7312961691334,35.5165878066025,45.1620398306576,11.8947978502592,13.3720097891754,5.64815175142916,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74358444383662,2.15627574859517,1.15508732651774,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.6165768359324,2.37285620900479,2.66818894508611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,4.05958087385735,4.58782324285425,5.69647187174163,5.71756261098694,4.52498500394814,1.94541993357815,2.70015718619057,10.3106272918255,0,0,0,0,0,0.213425530045242,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,1.10513566212459,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,70.190923592577,0,0,0.717873024576814,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,1.09651553371436,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.694567422971502,0.655678681511872,0,0,0,0,0,0,0,0.563903507879121,2.12711030312805,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,2.61870874610114,84.74064970484,49.0390242937277,0,0.0636471582781649,0,0.435433495793923,0,2.96349033264185,0.286888821570705,0,0,0,0,0,0,0.122241444182866,0,0,12.0764276154616,0 | ||
|short_description=p1@TRBV6-5 | |||
}} | }} |
Latest revision as of 20:00, 16 September 2015
Short description: | p1@TRBV6-5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRBV6-5_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | 9bp_to_ENST00000390368, uc011krz.1_5end |
EntrezGene: | NA |
HGNC: | 12230 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.29e-52 | 18 |
alpha-beta T cell | 1.29e-52 | 18 |
immature T cell | 1.29e-52 | 18 |
mature T cell | 1.29e-52 | 18 |
immature alpha-beta T cell | 1.29e-52 | 18 |
T cell | 1.64e-41 | 25 |
pro-T cell | 1.64e-41 | 25 |
CD8-positive, alpha-beta T cell | 4.01e-37 | 11 |
lymphoid lineage restricted progenitor cell | 4.13e-24 | 52 |
lymphocyte | 1.50e-23 | 53 |
common lymphoid progenitor | 1.50e-23 | 53 |
CD4-positive, alpha-beta T cell | 2.23e-20 | 6 |
nongranular leukocyte | 4.49e-12 | 115 |
naive T cell | 1.66e-11 | 3 |
single nucleate cell | 2.61e-10 | 3 |
mononuclear cell | 2.61e-10 | 3 |
leukocyte | 3.06e-10 | 136 |
natural killer cell | 5.02e-10 | 3 |
pro-NK cell | 5.02e-10 | 3 |
regulatory T cell | 2.54e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.54e-08 | 2 |
naive regulatory T cell | 2.54e-08 | 2 |
hematopoietic lineage restricted progenitor cell | 2.67e-08 | 120 |
hematopoietic stem cell | 3.56e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
blood | 6.72e-24 | 15 |
haemolymphatic fluid | 6.72e-24 | 15 |
organism substance | 6.72e-24 | 15 |
thymus | 5.20e-09 | 4 |
hemolymphoid system gland | 5.20e-09 | 4 |
thymic region | 5.20e-09 | 4 |
pharyngeal gland | 5.20e-09 | 4 |
thymus primordium | 5.20e-09 | 4 |
hemopoietic organ | 2.35e-08 | 7 |
immune organ | 2.35e-08 | 7 |