FFCP PHASE1:Hg19::chr7:94055770..94055813,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:94055770..94055813,+
|short_description=p3@COL1A2
|description=CAGE_peak_3_at_COL1A2_5end
|association_with_transcript=-8bp_to_ENST00000488121_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1278 | |EntrezGene=1278 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2198 | |HGNC=2198 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000488121_5end | |||
|cluster_id=chr7:94055770..94055813,+ | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_3_at_COL1A2_5end | |||
|id=chr7:94055770..94055813,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.79e-48!180;CL:0000057!6.69e-28!75;CL:0000680!2.47e-18!57;CL:0000056!2.47e-18!57;CL:0000355!2.47e-18!57;CL:0000187!3.33e-17!54;CL:0000183!2.72e-16!59;CL:0000393!1.75e-15!60;CL:0000211!1.75e-15!60;CL:0000192!2.87e-14!42;CL:0000514!2.87e-14!42;CL:0000048!2.71e-13!430;CL:0000723!2.71e-12!436;CL:0000034!8.21e-12!444;CL:0002620!2.25e-11!23;CL:0000359!4.60e-10!32;CL:0002334!1.64e-08!12;CL:0002494!8.00e-08!16 | |||
|ontology_enrichment_celltype_v019=CL:0000134;5.97e-13;55!CL:0000192;1.05e-11;43!CL:0000723;1.73e-11;61!CL:0000187;4.11e-11;55!CL:0000048;4.25e-11;58!CL:0000359;1.13e-10;32!CL:0000057;1.17e-10;73!CL:0002320;5.86e-10;188!CL:0002620;7.94e-10;23!CL:0002334;8.00e-10;12!CL:0000393;3.94e-09;61!CL:0000211;3.94e-09;61!CL:0002494;5.13e-09;16!CL:0000034;1.80e-08;69!CL:0000499;2.83e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.56e-29,76;CL:0000048,1.32e-22,427;CL:0000723,1.71e-21,433;CL:0000680,1.54e-20,58;CL:0000056,1.54e-20,58;CL:0000355,1.54e-20,58;CL:0000034,4.55e-20,441;CL:0000187,3.28e-19,55;CL:0000393,1.73e-16,61;CL:0000211,1.73e-16,61;CL:0000192,2.14e-16,43;CL:0000514,2.14e-16,43;CL:0000359,4.09e-11,32;CL:0002320,1.58e-10,361;CL:0002620,7.09e-10,23;CL:0002334,8.25e-10,12;CL:0000134,2.92e-09,354;CL:0002494,5.39e-09,16;CL:0000499,2.93e-07,28;CL:0000219,3.18e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;1.05e-11;43!CL:0000355;1.19e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.81e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.69e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.89e-22!83;UBERON:0002329!1.89e-22!83;UBERON:0003077!1.89e-22!83;UBERON:0003059!1.89e-22!83;UBERON:0007282!1.89e-22!83;UBERON:0009618!1.89e-22!83;UBERON:0007285!1.89e-22!83;UBERON:0004290!7.73e-21!70;UBERON:0002385!6.58e-19!63;UBERON:0001015!6.58e-19!63;UBERON:0000383!6.58e-19!63;UBERON:0001134!7.27e-19!61;UBERON:0002036!7.27e-19!61;UBERON:0003082!7.27e-19!61;UBERON:0000486!2.04e-16!82;UBERON:0005256!2.59e-11!143;UBERON:0002199!2.67e-09!45;UBERON:0002416!2.67e-09!45;UBERON:0003102!8.36e-09!95;UBERON:0000475!2.21e-08!365;UBERON:0004872!3.72e-08!84;UBERON:0002100!5.42e-08!216;UBERON:0002097!1.44e-07!40;UBERON:0001013!1.75e-07!14;UBERON:0000948!9.11e-07!24;UBERON:0005498!9.11e-07!24;UBERON:0004140!9.11e-07!24;UBERON:0009881!9.11e-07!24;UBERON:0004141!9.11e-07!24;UBERON:0003084!9.11e-07!24;UBERON:0007005!9.11e-07!24;UBERON:0004139!9.11e-07!24;UBERON:0004291!9.11e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;6.03e-10;198!UBERON:0004457;2.24e-07;9!UBERON:0000042;2.24e-07;9!UBERON:0003688;5.45e-07;6!UBERON:0002358;5.45e-07;6!UBERON:0003684;5.45e-07;6!UBERON:0001178;5.45e-07;6!UBERON:0001013;6.73e-07;14!UBERON:0002199;9.51e-07;46!UBERON:0002416;9.51e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.01e-20,62;UBERON:0002036,1.01e-20,62;UBERON:0003082,1.01e-20,62;UBERON:0007524,1.45e-20,73;UBERON:0002329,2.55e-20,71;UBERON:0003059,2.55e-20,71;UBERON:0007282,2.55e-20,71;UBERON:0004290,2.55e-20,71;UBERON:0009618,2.55e-20,71;UBERON:0003077,9.08e-20,72;UBERON:0007285,9.08e-20,72;UBERON:0002385,1.65e-19,64;UBERON:0001015,1.65e-19,64;UBERON:0000383,1.65e-19,64;UBERON:0007503,8.52e-17,78;UBERON:0000486,9.35e-17,83;UBERON:0005256,1.68e-12,122;UBERON:0003104,2.22e-11,160;UBERON:0009142,2.22e-11,160;UBERON:0002384,3.48e-11,371;UBERON:0002199,1.75e-09,46;UBERON:0002416,1.75e-09,46;UBERON:0000926,8.01e-09,315;UBERON:0004120,8.01e-09,315;UBERON:0006603,8.01e-09,315;UBERON:0004872,8.65e-09,83;UBERON:0002097,4.58e-08,41;UBERON:0001637,5.05e-08,42;UBERON:0003509,5.05e-08,42;UBERON:0004572,5.05e-08,42;UBERON:0000490,1.46e-07,148;UBERON:0003102,1.70e-07,99;UBERON:0004573,3.74e-07,33;UBERON:0004571,3.74e-07,33;UBERON:0003688,5.32e-07,6;UBERON:0002358,5.32e-07,6;UBERON:0003684,5.32e-07,6;UBERON:0001178,5.32e-07,6;UBERON:0001013,5.66e-07,14;UBERON:0000948,7.00e-07,24;UBERON:0005498,7.00e-07,24;UBERON:0004140,7.00e-07,24;UBERON:0009881,7.00e-07,24;UBERON:0004141,7.00e-07,24;UBERON:0003084,7.00e-07,24;UBERON:0007005,7.00e-07,24;UBERON:0004139,7.00e-07,24;UBERON:0004291,7.00e-07,24;UBERON:0004535,7.85e-07,109 | |||
|phase1_expression=15.987697375809,24.6215602474631,14.659258025981,40.0293193412522,21.4541325325098,17.4467704820074,20.2639902534648,0.631719873426831,1.56711376919903,0.245733936501509,0,0.436882744260345,1.58260186937072,1.23766352960047,2.98257638155124,9.41255205032485,6.02694528023977,3.65155045193687,4.39139518911456,1.72369481307503,1.63200552995402,2.82109249330279,0,0.547497700291537,0.502170558379211,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,4.69490601792545,3.70801429346238,12.2889311810753,15.5414752297126,19.8439730976328,15.1104329939709,23.8451086448292,1.03988298880475,1.55210578223795,1.05401742831751,0.196468613246569,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.8304292949378,6.20489507156441,8.87141511448566,27.2494789711373,7.09336764396714,9.53151920241922,5.33744978648525,10.3600370335207,1.55605517699883,4.17603083416033,2.7788523529288,9.08144565869588,8.06646294271999,0.937285727335186,0.624320153660641,0.570471821544449,1.94283284717341,1.05691048779388,0.161872944368132,0.561803226808994,1.63323337003915,3.19369225010597,1.44656093646072,15.4440371446667,27.6938960791984,2.73048408581408,2.15585442544872,0.841680569770331,2.12701483782339,1.38532057742091,2.63386572528503,22.3736090933284,13.8219014194069,4.65071950956086,10.404598869954,17.5117058831225,11.0204588602972,19.8060123415706,6.80146692973697,19.0653999633766,14.3309979375324,17.8902912175742,10.7180705677318,10.8546522924969,10.769838141149,12.4467463750485,27.3357386237793,6.44813428656898,3.05209066158878,0,0,0,0.121973706129595,0,0,0.518305275076852,0.252320850875628,0,4.69348596989448,23.7999147131368,1.38134921352481,6.03678306441573,10.8281922250438,0,0,0,0,0,0,0,0,0,0,0,4.115740113314,23.5213938216867,0,0,0,0,0,0.514703430895577,0,0,0,0,0,5.19967392639789,0,0.115930404975077,1.29149563659404,0,0,0.190254152234598,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0.411309970813294,0.300343057843917,0,0.448524337381443,1.30788020649984,0.80672114403045,5.55868377758444,7.15312891703765,4.22651376278,4.78688609852767,3.12022310734098,1.54324424557285,0,1.8649552531127,6.86294369559108,14.1081617401775,1.64648067356154,1.95441710576241,7.46323092359346,3.95975936466715,1.20575750823834,0,0.399891964728228,0,0,0,8.14724508671381,10.3375742250703,0,6.51515880004106,4.72595541865882,1.79060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,1.96306386750624,3.50119364741774,0.271265023699736,33.4833087064599,80.47147394752,22.0783381047509,9.25417178442434,6.92176029373754,6.82222512167955,6.2083842775503,1.99267679560631,5.53107505625109,3.30157734978715,6.46143819627044,8.92172901908225,0,0,0,0,9.98612637062982,6.04780586659361,21.3372714724148,17.3412029815511,49.9574968090871,17.555063448031,14.3278029738677,25.2540656195464,7.42090332224955,4.78050050788232,11.7190738706664,1.23190734020714,6.23105315020345,4.64841513839837,0,0,0,5.74072240823034,9.650831904356,12.063446176267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,0,0.515205058238611,0.183138929636687,0.082509499920588,0,0,14.4615536859744,0.870036464629098,1.54048617114644,1.99554777143968,1.65403886981437,2.25582514223375,7.97591816528257,1.87498580315422,5.2528901031575,0,0,0,0.10115778085555,5.11330104227014,27.3886741742657,0.6970372701606,5.5446044431696,0,0,2.7798632865588,2.00374841438788,3.34942532423701,1.58189712359363,6.1001662055624,4.09436466098134,2.56763392820352,1.59101623962968,3.92474320099615,3.41757669408298,10.7069441597061,6.12624492197569,1.2130948894399,4.75530963519025,1.26377536871694,3.41343617362713,4.14312932373184,2.11300293513511,4.09499734223957,10.4640019645747,3.39024349860728,4.41092274836899,7.96126770289464,5.69986150829892,8.68163301400032,11.1502107847928,3.04365565444056,1.8589409885985,3.3803472303869,1.43411352204052,2.55447506634115,5.35006577221875,1.06428319221179,14.9886421061342,15.1475650761555,1.13841952129715,3.14941248220485,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,3.34242278632766,2.37571744666111,1.22864280839693,0,0,0,0,0,1.59398390600856,0.828851746593443,0,0,0,28.3046024772245,0,0,0,0.591860433821602,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,1.61595542857974,0,0,0,0,3.50901275705111,6.04544116452291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,13.6438200040794,0,0,0,0,1.18375320854817,4.83962864194656,0.30607276163049,0.695052375913368,0,0,0,0,0,0,0,0,0,0,0,4.54289337429278,1.37588825977293,0,0,0,0.193978032976839,0,9.0392296312213,0,0,0,0,0,1.06726497369676,0,0,0,0,0,0,0,0.67952103036807,1.04602846312333,0.509991088181609,0.288950589901519,0,0,0,2.14882720709979,0,2.79282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| ||
|short_description=p3@COL1A2 | |||
}} | }} |
Latest revision as of 02:54, 20 September 2015
Short description: | p3@COL1A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL1A2_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -8bp_to_ENST00000488121_5end |
EntrezGene: | COL1A2 |
HGNC: | 2198 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.56e-29 | 76 |
multi fate stem cell | 1.32e-22 | 427 |
somatic stem cell | 1.71e-21 | 433 |
muscle precursor cell | 1.54e-20 | 58 |
myoblast | 1.54e-20 | 58 |
multi-potent skeletal muscle stem cell | 1.54e-20 | 58 |
stem cell | 4.55e-20 | 441 |
muscle cell | 3.28e-19 | 55 |
electrically responsive cell | 1.73e-16 | 61 |
electrically active cell | 1.73e-16 | 61 |
smooth muscle cell | 2.14e-16 | 43 |
smooth muscle myoblast | 2.14e-16 | 43 |
vascular associated smooth muscle cell | 4.09e-11 | 32 |
connective tissue cell | 1.58e-10 | 361 |
skin fibroblast | 7.09e-10 | 23 |
preadipocyte | 8.25e-10 | 12 |
mesenchymal cell | 2.92e-09 | 354 |
cardiocyte | 5.39e-09 | 16 |
stromal cell | 2.93e-07 | 28 |
motile cell | 3.18e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.69e-07 | 14 |