FFCP PHASE1:Hg19::chr11:417388..417407,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=59307 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30575 | |||
|TSSclassifier=strong | |||
|UniProt=Q6IA17 | |||
|association_with_transcript=0bp_to_ENST00000332725,NM_001135053,NM_021805,uc001lpe.1,uc001lpf.2_5end | |||
|cluster_id=chr11:417388..417407,- | |||
|description=CAGE_peak_5_at_SIGIRR_5end | |||
|id=chr11:417388..417407,- | |||
|ontology_enrichment_celltype=CL:0000791!3.53e-14!18;CL:0000789!3.53e-14!18;CL:0002420!3.53e-14!18;CL:0002419!3.53e-14!18;CL:0000790!3.53e-14!18;CL:0000066!1.43e-11!254;CL:0002076!2.06e-10!43;CL:0000223!1.11e-09!59;CL:0000625!8.52e-09!11;CL:0000084!4.18e-08!25;CL:0000827!4.18e-08!25;CL:0002368!3.21e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.27e-19;18!CL:0000789;3.27e-19;18!CL:0002419;3.27e-19;18!CL:0000084;3.92e-12;25!CL:0000625;1.22e-11;11!CL:0002076;1.44e-08;42!CL:0000624;1.68e-08;6!CL:0002368;1.73e-08;13!CL:0002202;6.43e-07;9!CL:0002632;6.43e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.32e-19,18;CL:0000789,1.32e-19,18;CL:0002420,1.32e-19,18;CL:0002419,1.32e-19,18;CL:0000790,1.32e-19,18;CL:0000084,2.14e-12,25;CL:0000827,2.14e-12,25;CL:0000625,6.57e-12,11;CL:0002076,5.13e-11,42;CL:0000223,7.20e-10,58;CL:0002368,1.06e-08,13;CL:0000624,1.36e-08,6;CL:0000838,2.85e-08,52;CL:0000066,3.35e-08,253;CL:0000542,5.56e-08,53;CL:0000051,5.56e-08,53;CL:0002202,4.78e-07,9;CL:0002632,4.78e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000790;3.27e-19;18 | |||
|ontology_enrichment_disease=DOID:305!2.77e-12!106;DOID:1749!3.49e-08!14;DOID:299!1.18e-07!25;DOID:0050687!5.42e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:299;4.85e-10;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.34e-12,106;DOID:299,5.05e-10,25;DOID:0050687,5.53e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.64e-12!169;UBERON:0000925!1.64e-12!169;UBERON:0006595!1.64e-12!169;UBERON:0001007!9.71e-11!155;UBERON:0001555!9.71e-11!155;UBERON:0007026!9.71e-11!155;UBERON:0004921!3.15e-10!129;UBERON:0004185!3.15e-10!129;UBERON:0000464!5.00e-09!104;UBERON:0000466!1.22e-08!126;UBERON:0001004!2.35e-08!72;UBERON:0000077!2.52e-08!130;UBERON:0005911!1.04e-07!82;UBERON:0000065!1.64e-07!53;UBERON:0001041!8.39e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0002048;3.68e-07;22!UBERON:0000117;3.68e-07;22!UBERON:0000171;3.68e-07;22!UBERON:0000170;3.68e-07;22!UBERON:0004921;8.97e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,1.07e-09,118;UBERON:0004119,2.52e-09,160;UBERON:0000925,2.52e-09,160;UBERON:0006595,2.52e-09,160;UBERON:0001007,5.54e-09,145;UBERON:0001555,5.54e-09,145;UBERON:0007026,5.54e-09,145;UBERON:0005911,1.55e-07,82;UBERON:0005178,4.41e-07,34;UBERON:0002224,4.41e-07,34;UBERON:0002048,4.59e-07,22;UBERON:0000117,4.59e-07,22;UBERON:0000171,4.59e-07,22;UBERON:0000170,4.59e-07,22;UBERON:0005597,4.59e-07,22;UBERON:0000118,4.59e-07,22;UBERON:0005177,7.04e-07,101;UBERON:0005181,9.68e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.96587149201207,20.9340350391728,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.309632246632152,3.67768489791571,3.31326510656075,4.06729411183466,0,0,0,0,0.401088894940283,1.30206522429511,0.223915474239924,0.32389366601898,0.515151135268373,0,0,0,0,0.411167888021826,0,0.575384784644301,0,0,0,0.645484683583826,0,0,0.545812300115692,0,0.306083892370903,0,0,0,0,0,0.580418477257168,0.56738522469114,0,1.00499466102697,0.521482918420201,0,1.81619850790011,0.368277635987565,0.316462387440884,0.211255286311942,0,0,0.22465726229299,0,0,0.570025487482497,0,0.182664153764634,3.51992488922645,1.09227722252426,0,0,1.20118796110804,0,0,0.954053754535364,0,1.17447437874188,2.29363936875137,0,1.12101712596307,0,6.68813218387032,7.07419372948497,4.5232329779892,2.50779743086017,5.86660079940463,3.78758244587787,7.79306913631645,2.1167986808183,6.48132996444642,3.76607620792156,2.97884250141517,2.30564375506215,1.8208308658383,3.28875809207352,0.829050053357545,1.44901542867526,6.3763222159686,5.88589821797369,5.22677619024884,2.60611488204402,4.98186641682498,3.4362744548263,2.78321661221453,2.86708872891687,2.60433381542567,5.70271226669025,4.06552821509986,1.66382594500744,4.99722906209383,3.31488152861624,1.64225599384209,5.24177532384304,5.88368430723716,5.79297615531196,0,0,0,0,0,0,0,0,0,0,0,1.30979075497713,1.82147644146271,0,0,0.174129737299267,0.26591592103773,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0.825354125820202,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0.183201743930407,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.272746120590835,1.14721838155602,1.09776335516636,1.06023814657188,2.20768491452085,0.414644220061482,2.27088765788066,0.36497735907583,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0,0,0,0.134831308160164,0,0,0,0,0,0,1.26755034821831,0.982827216677626,1.18157981336281,0,3.56666471775029,0,0.109750285408626,0,1.10581869652794,1.38882667737794,0,0,0,0,0,0.144366447761074,0,0,10.2726571734706,13.735778593518,0,0,0.148631162288728,0.93733833986777,0.16798212819886,0.141775097242386,0.0895585227028483,0,0.766765358330422,0,0.44024217006613,0,0,0.12624243342638,0,0,0,0,0.205654985406647,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57795831185113,2.36436912242313,2.15627574859517,2.43851768931522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,2.37285620900479,2.98837161849644,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,3.2632051389738,0.200506470303285,2.20994373446151,0,0,0,3.60959690325929,1.30926073077505,1.56869953835371,4.38417673959782,0.73886140225013,0,0,0,0,0.270946437543853,0,4.07802036872061,9.14183609821597,1.11937377361089,0,0,0,0,0,1.64865618636356,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,3.63626813794152,1.92190067365106,0.510450849978337,5.15904682363305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,1.63577591633371,1.34060455107157,4.3556393944529,1.97701981631236,0.86101074534246,1.68471475667626,1.33029046061003,0,2.53723804616085,2.29391162142713,3.41788312304498,3.33524485640905,4.52498500394814,2.59389324477087,1.08006287447623,2.37937552888281,0,0,1.71528151186722,0.185803175125719,0,0,0,0.399158742865633,0.5745161103971,0,0.973865820823666,0,0,0,0,0,0,0.201799707191048,0.851692475380653,0,0,0,0,0,0,0,0,0,0,9.91844864163565,0,0,0,0,0.71623345421307,0.296964680832639,0.307160702099232,0,0,0,0,0.422250816255987,0.796991953004279,2.76283915531148,4.03092396566842,0,0,0,7.54894149637545,3.40140231883657,0.511572370226872,0.493217028184668,0,0,0,0,0,3.1251331330228,7.17171999968805,2.17499872630438,3.18621655199399,3.55955110409873,1.18193840883968,0,0,0,0,0,0,0,0,0,0,3.34616986268648,0.846452843541768,0,8.0697366535821,5.20594337576678,3.80265801727028,0.957003479195758,0,0.533034776018635,0,0.156980256395025,0,0,0,0,0,0,0,4.40728582029699,3.1097675715467,0,3.98104772431402,3.18447232212021,3.66618086960175,0,0,0,0.134802265961354,0,0,0,2.15231080825299,0,7.49710365413842,1.20990716048664,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,1.42304773014896,0,5.38035188838906,1.95984794828755,0.783532859223623,3.4945333648406,0,0,0,0,0.969890164884194,0,0,0,0,0,3.71547627196126,0.881747022766871,4.69596588426576,0,2.73771792592801,0,0,0.288109595976299,0.124252535565433,4.24249262310232,0,0,0,0,0,0.273810757783986,0,0,0,0,0.229160424011684,0,1.19807400299395,0,0.446342914883745,0,0,4.65983798109815,0,0,0,0.0984274815147488,0,0,0,1.92903778158023,2.33817042215297,1.24632101408756,0,0,0,0,2.60058834087354,2.46536564234491,0,0,6.52511670886114,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0.293104467356165,0,0,0,0,6.34333520085005,2.24253566392159,1.41483874589699,1.24271716604159,2.48083010905975,0,0,4.46838880439127,0,0,0,0,5.33983927250797,0,0,0,0,0,0,0,0,0,0,0,0.936669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| |||
|short_description=p5@SIGIRR | |||
}} |
Latest revision as of 23:14, 17 September 2015
Short description: | p5@SIGIRR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SIGIRR_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000332725, NM_001135053, NM_021805, uc001lpe.1, uc001lpf.2_5end |
EntrezGene: | SIGIRR |
HGNC: | 30575 |
UniProt: | Q6IA17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.32e-19 | 18 |
alpha-beta T cell | 1.32e-19 | 18 |
immature T cell | 1.32e-19 | 18 |
mature T cell | 1.32e-19 | 18 |
immature alpha-beta T cell | 1.32e-19 | 18 |
T cell | 2.14e-12 | 25 |
pro-T cell | 2.14e-12 | 25 |
CD8-positive, alpha-beta T cell | 6.57e-12 | 11 |
endo-epithelial cell | 5.13e-11 | 42 |
endodermal cell | 7.20e-10 | 58 |
respiratory epithelial cell | 1.06e-08 | 13 |
CD4-positive, alpha-beta T cell | 1.36e-08 | 6 |
lymphoid lineage restricted progenitor cell | 2.85e-08 | 52 |
epithelial cell | 3.35e-08 | 253 |
lymphocyte | 5.56e-08 | 53 |
common lymphoid progenitor | 5.56e-08 | 53 |
epithelial cell of tracheobronchial tree | 4.78e-07 | 9 |
epithelial cell of lower respiratory tract | 4.78e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 1.07e-09 | 118 |
endoderm-derived structure | 2.52e-09 | 160 |
endoderm | 2.52e-09 | 160 |
presumptive endoderm | 2.52e-09 | 160 |
digestive system | 5.54e-09 | 145 |
digestive tract | 5.54e-09 | 145 |
primitive gut | 5.54e-09 | 145 |
endo-epithelium | 1.55e-07 | 82 |
thoracic cavity element | 4.41e-07 | 34 |
thoracic cavity | 4.41e-07 | 34 |
lung | 4.59e-07 | 22 |
respiratory tube | 4.59e-07 | 22 |
respiration organ | 4.59e-07 | 22 |
pair of lungs | 4.59e-07 | 22 |
lung primordium | 4.59e-07 | 22 |
lung bud | 4.59e-07 | 22 |
trunk region element | 7.04e-07 | 101 |
thoracic segment organ | 9.68e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.34e-12 | 106 |
adenocarcinoma | 5.05e-10 | 25 |
cell type cancer | 5.53e-08 | 143 |