FFCP PHASE1:Hg19::chr12:132434439..132434555,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57634 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11958 | |||
|TSSclassifier=strong | |||
|UniProt=Q96L91,F8WCN8 | |||
|association_with_transcript=0bp_to_ENST00000330386,ENST00000332482,ENST00000333577,ENST00000389561,ENST00000389562,ENST00000423130,ENST00000537902,NM_015409,uc001ujj.1,uc001ujk.2,uc001ujl.2_5end | |||
|cluster_id=chr12:132434439..132434555,+ | |||
|description=CAGE_peak_1_at_EP400_5end | |||
|id=chr12:132434439..132434555,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.95e-19!115;UBERON:0001049!9.11e-16!57;UBERON:0005068!9.11e-16!57;UBERON:0006241!9.11e-16!57;UBERON:0007135!9.11e-16!57;UBERON:0002346!3.48e-15!90;UBERON:0003075!1.36e-14!86;UBERON:0007284!1.36e-14!86;UBERON:0002780!3.16e-13!41;UBERON:0001890!3.16e-13!41;UBERON:0006240!3.16e-13!41;UBERON:0000955!4.85e-13!69;UBERON:0006238!4.85e-13!69;UBERON:0000073!5.65e-13!94;UBERON:0001016!5.65e-13!94;UBERON:0001017!6.21e-13!82;UBERON:0003080!9.49e-13!42;UBERON:0002616!9.65e-13!59;UBERON:0005743!5.91e-12!86;UBERON:0001893!1.44e-11!34;UBERON:0002020!1.81e-11!34;UBERON:0003528!1.81e-11!34;UBERON:0003056!1.97e-11!61;UBERON:0002791!2.79e-11!33;UBERON:0001869!8.13e-11!32;UBERON:0002619!2.72e-09!22;UBERON:0000924!1.01e-08!173;UBERON:0006601!1.01e-08!173;UBERON:0000153!1.42e-08!129;UBERON:0007811!1.42e-08!129;UBERON:0001950!2.89e-08!20;UBERON:0004121!3.15e-08!169;UBERON:0000956!5.00e-08!25;UBERON:0000203!5.00e-08!25;UBERON:0000033!8.96e-08!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.70e-10;41!UBERON:0001890;5.70e-10;41!UBERON:0001893;6.76e-10;34!UBERON:0003528;9.62e-10;34!UBERON:0002020;9.62e-10;34!UBERON:0002791;1.04e-09;32!UBERON:0001869;1.31e-09;32!UBERON:0000073;1.43e-09;53!UBERON:0002616;1.43e-09;53!UBERON:0002619;2.68e-09;22!UBERON:0001950;2.79e-08;20!UBERON:0000956;5.18e-08;25!UBERON:0000203;5.18e-08;25!UBERON:0001016;5.51e-07;83!UBERON:0001017;6.86e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.29e-18,114;UBERON:0001049,3.23e-16,56;UBERON:0005068,3.23e-16,56;UBERON:0006241,3.23e-16,56;UBERON:0007135,3.23e-16,56;UBERON:0000073,1.43e-15,53;UBERON:0002616,1.43e-15,53;UBERON:0002346,4.56e-15,86;UBERON:0003075,1.76e-14,82;UBERON:0007284,1.76e-14,82;UBERON:0001016,3.16e-14,89;UBERON:0000955,2.27e-13,68;UBERON:0006238,2.27e-13,68;UBERON:0002780,3.16e-13,41;UBERON:0001890,3.16e-13,41;UBERON:0003080,3.16e-13,41;UBERON:0006240,3.16e-13,41;UBERON:0001017,3.20e-13,81;UBERON:0003056,2.80e-12,61;UBERON:0001893,1.44e-11,34;UBERON:0003528,1.81e-11,34;UBERON:0002020,1.81e-11,34;UBERON:0002791,7.16e-11,32;UBERON:0001869,8.13e-11,32;UBERON:0010371,1.13e-09,104;UBERON:0002619,2.72e-09,22;UBERON:0001950,2.89e-08,20;UBERON:0004121,3.62e-08,171;UBERON:0000924,3.62e-08,171;UBERON:0006601,3.62e-08,171;UBERON:0000956,5.00e-08,25;UBERON:0000203,5.00e-08,25 | |||
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| |||
|short_description=p1@EP400 | |||
}} |
Latest revision as of 09:47, 17 September 2015
Short description: | p1@EP400 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EP400_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000330386, ENST00000332482, ENST00000333577, ENST00000389561, ENST00000389562, ENST00000423130, ENST00000537902, NM_015409, uc001ujj.1, uc001ujk.2, uc001ujl.2_5end |
EntrezGene: | EP400 |
HGNC: | 11958 |
UniProt: | Q96L91F8WCN8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.29e-18 | 114 |
neural tube | 3.23e-16 | 56 |
neural rod | 3.23e-16 | 56 |
future spinal cord | 3.23e-16 | 56 |
neural keel | 3.23e-16 | 56 |
regional part of nervous system | 1.43e-15 | 53 |
regional part of brain | 1.43e-15 | 53 |
neurectoderm | 4.56e-15 | 86 |
neural plate | 1.76e-14 | 82 |
presumptive neural plate | 1.76e-14 | 82 |
nervous system | 3.16e-14 | 89 |
brain | 2.27e-13 | 68 |
future brain | 2.27e-13 | 68 |
regional part of forebrain | 3.16e-13 | 41 |
forebrain | 3.16e-13 | 41 |
anterior neural tube | 3.16e-13 | 41 |
future forebrain | 3.16e-13 | 41 |
central nervous system | 3.20e-13 | 81 |
pre-chordal neural plate | 2.80e-12 | 61 |
telencephalon | 1.44e-11 | 34 |
brain grey matter | 1.81e-11 | 34 |
gray matter | 1.81e-11 | 34 |
regional part of telencephalon | 7.16e-11 | 32 |
cerebral hemisphere | 8.13e-11 | 32 |
ecto-epithelium | 1.13e-09 | 104 |
regional part of cerebral cortex | 2.72e-09 | 22 |
neocortex | 2.89e-08 | 20 |
ectoderm-derived structure | 3.62e-08 | 171 |
ectoderm | 3.62e-08 | 171 |
presumptive ectoderm | 3.62e-08 | 171 |
cerebral cortex | 5.00e-08 | 25 |
pallium | 5.00e-08 | 25 |