FFCP PHASE1:Hg19::chr13:29233000..29233008,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr13:29233000..29233008,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr13:29233000..29233008,- | |||
|id=chr13:29233000..29233008,- | |||
|ontology_enrichment_celltype=CL:0002057!5.79e-38!42;CL:0000860!1.03e-34!45;CL:0002194!2.59e-21!63;CL:0000576!2.59e-21!63;CL:0000040!2.59e-21!63;CL:0000559!2.59e-21!63;CL:0002009!2.31e-20!65;CL:0000839!3.14e-18!70;CL:0000557!7.70e-18!71;CL:0000766!2.58e-17!76;CL:0002087!2.37e-12!119;CL:0002031!1.16e-10!124;CL:0000738!2.05e-10!140;CL:0000763!1.34e-09!112;CL:0000049!1.34e-09!112;CL:0000037!1.02e-07!172;CL:0000566!1.02e-07!172;CL:0002032!9.13e-07!165;CL:0000837!9.13e-07!165;CL:0000988!9.62e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.36e-112;33!CL:0002057;4.36e-112;33!CL:0000473;7.26e-76;39!CL:0000234;7.26e-76;39!CL:0000576;2.20e-47;48!CL:0000766;1.63e-31;69!CL:0000763;6.02e-12;100!CL:0002087;7.58e-12;104!CL:0002581;1.61e-09;1!CL:0000738;7.53e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.20e-92,42;CL:0002057,2.20e-92,42;CL:0000473,1.91e-80,48;CL:0000234,1.91e-80,48;CL:0002194,1.00e-63,59;CL:0000576,1.00e-63,59;CL:0000040,1.00e-63,59;CL:0000559,1.00e-63,59;CL:0002009,1.45e-61,61;CL:0000839,9.87e-57,66;CL:0000557,7.51e-56,67;CL:0000766,8.36e-52,72;CL:0000763,1.32e-33,108;CL:0000049,1.32e-33,108;CL:0002087,2.24e-31,115;CL:0002031,6.10e-30,120;CL:0000738,4.77e-26,136;CL:0002032,1.69e-21,161;CL:0000837,1.69e-21,161;CL:0000037,1.83e-20,168;CL:0000988,2.97e-19,177;CL:0002581,1.25e-09,1;CL:0000134,7.20e-09,354;CL:0002320,1.27e-08,361;CL:0000219,9.26e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.06e-66;42!CL:0000049;3.28e-11;108!UBERON:0005425;1.61e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.54e-18!80;UBERON:0001474!1.57e-16!86;UBERON:0002390!2.27e-15!102;UBERON:0003061!2.27e-15!102;UBERON:0004765!1.81e-13!101;UBERON:0001434!1.81e-13!101;UBERON:0002405!1.82e-13!115;UBERON:0002193!4.80e-13!112;UBERON:0002204!5.22e-09!167;UBERON:0003081!5.55e-09!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.61e-09;1!UBERON:0001785;1.61e-09;1!UBERON:0002464;1.61e-09;1!UBERON:0004904;1.61e-09;1!UBERON:0001021;1.61e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.05e-49,76;UBERON:0001474,3.60e-45,82;UBERON:0004765,6.54e-41,90;UBERON:0002405,1.68e-39,93;UBERON:0002390,2.45e-37,98;UBERON:0003061,2.45e-37,98;UBERON:0001434,1.56e-36,100;UBERON:0002193,1.32e-33,108;UBERON:0002204,1.32e-20,167;UBERON:0003081,2.37e-16,203;UBERON:0000941,1.48e-09,1;UBERON:0001785,1.48e-09,1;UBERON:0002464,1.48e-09,1;UBERON:0004904,1.48e-09,1;UBERON:0001021,1.48e-09,1;UBERON:0003902,1.48e-09,1;UBERON:0005425,1.48e-09,1;UBERON:0000926,2.85e-09,315;UBERON:0004120,2.85e-09,315;UBERON:0006603,2.85e-09,315;UBERON:0002384,2.73e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.246301768349837,0.157421562627358,0,0.383829398097213,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0,0.290796477559129,1.13362783106643,1.4555043671269,0.232429036905685,1.23350366406548,2.78735733805593,0,1.2808035326455,8.27687804610048,1.37898272294647,1.93645405075148,12.1883837934908,0.752969358170419,0.545812300115692,5.39336362668203,0.612167784741805,5.77672248736969,14.7047538933779,0.989553900560148,1.59570926097305,1.70489900213078,0.580418477257168,1.13477044938228,1.24564449799115,2.26123798731069,2.60741459210101,11.0766310799609,1.21079900526674,2.20966581592539,3.16462387440884,0.211255286311942,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0.81014194788176,0.0892997282840798,0,0,0,0,0,0,0,0,0.496971951695318,0,0.529636723252875,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0.358779271377724,0,0,0,0,0.515281080091258,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0.441463099414651,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0.94443704049192,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.286822704408103,0,0,0.709522128141196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0.307160702099232,0,0.281338832821026,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0.129282956361551,0.39669780522807,0,0,0,0,0.414239055347196,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0.1251909307065,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0.233713309847224,0,0.378806010550178,0.754703705257725,0,0,0.604923695052956,0,0,0,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0.181848659202559,0,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394308725006267,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0.716697915757256,0,0.135982980381829,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p@chr13:29233000..29233008,- | |||
}} |
Latest revision as of 15:26, 24 July 2015
Short description: | p@chr13:29233000..29233008, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:29233000..29233008, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.20e-92 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.20e-92 | 42 |
defensive cell | 1.91e-80 | 48 |
phagocyte | 1.91e-80 | 48 |
monopoietic cell | 1.00e-63 | 59 |
monocyte | 1.00e-63 | 59 |
monoblast | 1.00e-63 | 59 |
promonocyte | 1.00e-63 | 59 |
macrophage dendritic cell progenitor | 1.45e-61 | 61 |
myeloid lineage restricted progenitor cell | 9.87e-57 | 66 |
granulocyte monocyte progenitor cell | 7.51e-56 | 67 |
myeloid leukocyte | 8.36e-52 | 72 |
myeloid cell | 1.32e-33 | 108 |
common myeloid progenitor | 1.32e-33 | 108 |
nongranular leukocyte | 2.24e-31 | 115 |
hematopoietic lineage restricted progenitor cell | 6.10e-30 | 120 |
leukocyte | 4.77e-26 | 136 |
hematopoietic oligopotent progenitor cell | 1.69e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.69e-21 | 161 |
hematopoietic stem cell | 1.83e-20 | 168 |
hematopoietic cell | 2.97e-19 | 177 |
perirenal preadipocyte | 1.25e-09 | 1 |
mesenchymal cell | 7.20e-09 | 354 |
connective tissue cell | 1.27e-08 | 361 |
motile cell | 9.26e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.05e-49 | 76 |
bone element | 3.60e-45 | 82 |
skeletal element | 6.54e-41 | 90 |
immune system | 1.68e-39 | 93 |
hematopoietic system | 2.45e-37 | 98 |
blood island | 2.45e-37 | 98 |
skeletal system | 1.56e-36 | 100 |
hemolymphoid system | 1.32e-33 | 108 |
musculoskeletal system | 1.32e-20 | 167 |
lateral plate mesoderm | 2.37e-16 | 203 |
cranial nerve II | 1.48e-09 | 1 |
cranial nerve | 1.48e-09 | 1 |
nerve trunk | 1.48e-09 | 1 |
nerve connecting eye with brain | 1.48e-09 | 1 |
nerve | 1.48e-09 | 1 |
retinal neural layer | 1.48e-09 | 1 |
presumptive neural retina | 1.48e-09 | 1 |
mesoderm | 2.85e-09 | 315 |
mesoderm-derived structure | 2.85e-09 | 315 |
presumptive mesoderm | 2.85e-09 | 315 |
connective tissue | 2.73e-08 | 371 |