FFCP PHASE1:Hg19::chr19:10928326..10928342,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=406976 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=31571 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-154bp_to_NR_029586,uc010xlj.1_5end | |||
|cluster_id=chr19:10928326..10928342,- | |||
|description=CAGE_peak_1_at_MIR199A1_5end | |||
|id=chr19:10928326..10928342,- | |||
|ontology_enrichment_celltype=CL:0000055!2.82e-57!180;CL:0000057!1.30e-41!75;CL:0000048!3.72e-28!430;CL:0000183!3.86e-27!59;CL:0000723!5.30e-27!436;CL:0000680!5.87e-27!57;CL:0000056!5.87e-27!57;CL:0000355!5.87e-27!57;CL:0000187!7.57e-27!54;CL:0000034!1.62e-25!444;CL:0000192!9.80e-23!42;CL:0000514!9.80e-23!42;CL:0000393!1.94e-22!60;CL:0000211!1.94e-22!60;CL:0002620!3.53e-20!23;CL:0002371!1.16e-16!591;CL:0000359!3.10e-16!32;CL:0000144!5.75e-13!625;CL:0002320!5.04e-12!365;CL:0000134!6.88e-11!358;CL:0000219!6.80e-09!390;CL:0002334!3.05e-08!12;CL:0000222!9.86e-08!119;CL:0002570!1.39e-07!8;CL:0000548!1.63e-07!679;CL:0000004!1.63e-07!679;CL:0000255!1.63e-07!679;CL:0000499!2.82e-07!27;CL:0000012!3.01e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.31e-23;23!CL:0000057;5.54e-15;73!CL:0000187;4.84e-12;55!CL:0000192;1.16e-11;43!CL:0000393;6.65e-11;61!CL:0000211;6.65e-11;61!CL:0000359;7.26e-10;32!CL:0002320;1.00e-09;188!CL:0002595;1.50e-07;5!CL:0002552;2.48e-07;5!CL:0000188;5.10e-07;9!CL:0002570;5.73e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.28e-38,76;CL:0000048,2.69e-24,427;CL:0000723,1.62e-23,433;CL:0002620,2.53e-23,23;CL:0000034,1.63e-22,441;CL:0000187,1.19e-19,55;CL:0000680,4.02e-18,58;CL:0000056,4.02e-18,58;CL:0000355,4.02e-18,58;CL:0000393,9.44e-17,61;CL:0000211,9.44e-17,61;CL:0000192,2.39e-14,43;CL:0000514,2.39e-14,43;CL:0002320,3.03e-11,361;CL:0000134,7.17e-11,354;CL:0000359,2.60e-10,32;CL:0000219,4.59e-08,386;CL:0002595,1.09e-07,5;CL:0002552,1.51e-07,5;CL:0000188,3.26e-07,9;CL:0002570,5.82e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000514;1.16e-11;43!CL:0000355;1.24e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.14e-09;5!DOID:450;7.14e-09;5!DOID:66;7.14e-09;5!DOID:423;7.14e-09;5!DOID:0080000;7.14e-09;5!DOID:11722;7.14e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.45e-09,5;DOID:450,6.45e-09,5;DOID:66,6.45e-09,5;DOID:423,6.45e-09,5;DOID:0080000,6.45e-09,5;DOID:11722,6.45e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.36e-33!83;UBERON:0002329!3.36e-33!83;UBERON:0003077!3.36e-33!83;UBERON:0003059!3.36e-33!83;UBERON:0007282!3.36e-33!83;UBERON:0009618!3.36e-33!83;UBERON:0007285!3.36e-33!83;UBERON:0004290!1.79e-30!70;UBERON:0000486!2.43e-25!82;UBERON:0001134!5.14e-24!61;UBERON:0002036!5.14e-24!61;UBERON:0003082!5.14e-24!61;UBERON:0002385!1.08e-22!63;UBERON:0001015!1.08e-22!63;UBERON:0000383!1.08e-22!63;UBERON:0005256!2.02e-17!143;UBERON:0003102!5.62e-16!95;UBERON:0002199!1.89e-15!45;UBERON:0002416!1.89e-15!45;UBERON:0001637!1.09e-13!42;UBERON:0003509!1.09e-13!42;UBERON:0004572!1.09e-13!42;UBERON:0002097!1.36e-13!40;UBERON:0004573!3.85e-12!33;UBERON:0004571!3.85e-12!33;UBERON:0002384!5.94e-12!375;UBERON:0002100!7.91e-11!216;UBERON:0002049!2.01e-10!79;UBERON:0007798!2.01e-10!79;UBERON:0004872!6.79e-10!84;UBERON:0001981!1.62e-09!60;UBERON:0007500!1.62e-09!60;UBERON:0004537!1.62e-09!60;UBERON:0006965!1.62e-09!60;UBERON:0004535!2.91e-09!110;UBERON:0001009!4.51e-09!113;UBERON:0000475!8.37e-09!365;UBERON:0001013!1.52e-08!14;UBERON:0002204!2.24e-08!167;UBERON:0000055!2.35e-08!69;UBERON:0002067!4.27e-08!9;UBERON:0004016!4.27e-08!9;UBERON:0010083!4.27e-08!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.68e-12;41!UBERON:0002199;1.27e-11;46!UBERON:0002416;1.27e-11;46!UBERON:0003102;1.44e-10;50!UBERON:0001013;2.31e-09;14!UBERON:0002384;5.74e-09;198!UBERON:0004573;5.46e-08;33!UBERON:0004571;5.46e-08;33!UBERON:0003834;1.50e-07;5!UBERON:0001533;1.50e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.10e-21,73;UBERON:0002329,1.00e-20,71;UBERON:0003059,1.00e-20,71;UBERON:0007282,1.00e-20,71;UBERON:0004290,1.00e-20,71;UBERON:0009618,1.00e-20,71;UBERON:0003077,2.83e-20,72;UBERON:0007285,2.83e-20,72;UBERON:0003102,3.99e-20,99;UBERON:0000486,3.12e-18,83;UBERON:0002199,4.25e-18,46;UBERON:0002416,4.25e-18,46;UBERON:0007503,8.10e-18,78;UBERON:0002097,1.97e-16,41;UBERON:0001134,2.52e-16,62;UBERON:0002036,2.52e-16,62;UBERON:0003082,2.52e-16,62;UBERON:0002385,1.62e-15,64;UBERON:0001015,1.62e-15,64;UBERON:0000383,1.62e-15,64;UBERON:0005256,7.40e-12,122;UBERON:0002384,8.69e-11,371;UBERON:0001013,2.15e-09,14;UBERON:0001637,5.12e-09,42;UBERON:0003509,5.12e-09,42;UBERON:0004572,5.12e-09,42;UBERON:0003104,1.09e-08,160;UBERON:0009142,1.09e-08,160;UBERON:0004573,1.43e-08,33;UBERON:0004571,1.43e-08,33;UBERON:0003834,1.09e-07,5;UBERON:0001533,1.09e-07,5;UBERON:0002204,2.44e-07,167;UBERON:0000490,3.66e-07,148;UBERON:0002100,8.33e-07,199 | |||
|phase1_expression=1.63510541343501,1.71280419112787,0.986680828671798,1.0007329835313,0.446961094427288,1.74467704820074,2.53299878168311,0,2.08948502559871,0,0,0,0,0.247532705920093,0,2.01697543935533,0,0,0.975865597581014,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0.722878304769133,3.50936537445123,0.869079113764942,0.795285947051099,5.35298357332899,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.506522046658319,9.26864265692532,2.86836620748814,0.354668382198357,0,2.1349799145941,0,0.933633106199299,0.67355336034844,0.326923806226917,1.96764655938411,2.30470369792,0.70296429550139,0.936480230490962,2.2818872861778,0.298897361103602,0.939475989150119,1.78060238804945,1.12360645361799,2.24569588380383,1.96534907698829,1.85986406116378,1.18800285728205,4.94533858557114,1.82032272387605,1.43723628363248,1.0100166837244,1.37630371859161,0.554128230968366,1.75591048352335,3.98434134538726,1.80285670687916,0.113432183160021,7.71375433462106,4.48470516518992,2.54318281391474,4.50136644126603,2.57631323096097,8.75977836155139,2.04728541964749,3.54430297706659,2.33848812386877,10.3497847440087,3.68199594569197,5.4959659318396,3.55009592516614,1.0075209822764,1.69560592310488,0,0,0,0,0,0,0,0,0,7.8224766164908,9.64861407289328,9.66944449467364,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0.977424915930974,3.11980435583874,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.784917590417525,0,0.07333828582095,0.258543431515556,14.3062578340753,0.845302752556,2.6593811658487,2.08014873822732,0.514414748524284,1.41849132023278,1.8649552531127,0.285955987316295,7.5967024754802,0,0.325736184293735,0.710783897485092,0.791951872933429,0,0,0,0,0,0,0,1.14861935834114,0,0.868687840005475,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0.542530047399471,1.87173775377726,1.96271887676878,1.26161932027148,2.81139395982512,1.20378439891088,0,3.10419213877515,1.32845119707087,2.21243002250044,4.34418072340414,1.17480694477644,2.40200396667599,0,0,0,0,1.66435439510497,0,0.744323423456331,2.60885354589706,1.12264037773229,1.28139149255701,0.511707249066704,1.12597744800525,1.48418066444991,1.23367755042124,0.710246901252508,0.0821271560138091,2.07701771673448,1.16210378459959,0,0,0,1.60740227430449,1.27463817604702,2.09799063935079,0,0,0,0,0,0,0,0,0,0.541892875087706,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,2.90012154876366,1.3864375540318,2.14905144616581,1.7918754422989,1.6113036730241,2.75531718437034,1.61930592090592,0.712256285173899,0,0,0,0,0.464845549297286,4.7221852024596,4.8792608911242,0,0.532306030317022,8.69932992075073,2.22389062924704,1.00187420719394,0.744316738719335,0.316379424718726,0.190630193923825,2.303080121802,0.855877976067841,7.00047145437061,10.20433232259,1.61885211824983,1.64722217841633,1.17812402345686,0.808729926293264,1.58510321173008,0.421258456238981,0.975267478179181,1.46228093778771,3.16950440270266,2.18399858252777,1.41405431953713,7.910568163417,7.71911480964574,1.99031692572366,1.31535265576129,0.578775534266688,0.655894752046633,0.405820753925408,2.16876448669825,3.3803472303869,0.143411352204052,0,0.35667105148125,2.83808851256478,1.68886108238131,1.64647446479951,1.89736586882858,2.79947776195986,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,0,2.89999830173917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37396390102793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,2.87149209830726,0,0,0.223171457441873,0,1.80149941771202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,1.08599920350743,0,1.30634944043764,0,0,0.681552087141687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0.235265819698172,0,0,1.94031243752936,3.50569964770837,1.10961172300523,0.757612021100357,1.76097531226803,3.55924488638614,0.457680136793847,0.756154618816195,0.932623203496683,0.295710299979268,0.318593534327405,0.449803112163605,1.08684069813382,1.24411862352257,0.265841714557995,0.521745061811734,0,0,0,0.727394636810238,0.214821114084977,0,0.398095888698616,0,3.43395705182793,4.71449284272287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13503190713367,3.49801305478497,0,0,0,0,0,0.109209638192014,0,0,0,0,0.954013051960256,0,0,2.46873160583479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0.1504206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| |||
|short_description=p1@MIR199A1 | |||
}} |
Latest revision as of 03:10, 25 September 2015
Short description: | p1@MIR199A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MIR199A1_5end |
Coexpression cluster: | NA |
Association with transcript: | -154bp_to_NR_029586, uc010xlj.1_5end |
EntrezGene: | MIR199A1 |
HGNC: | 31571 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.28e-38 | 76 |
multi fate stem cell | 2.69e-24 | 427 |
somatic stem cell | 1.62e-23 | 433 |
skin fibroblast | 2.53e-23 | 23 |
stem cell | 1.63e-22 | 441 |
muscle cell | 1.19e-19 | 55 |
muscle precursor cell | 4.02e-18 | 58 |
myoblast | 4.02e-18 | 58 |
multi-potent skeletal muscle stem cell | 4.02e-18 | 58 |
electrically responsive cell | 9.44e-17 | 61 |
electrically active cell | 9.44e-17 | 61 |
smooth muscle cell | 2.39e-14 | 43 |
smooth muscle myoblast | 2.39e-14 | 43 |
connective tissue cell | 3.03e-11 | 361 |
mesenchymal cell | 7.17e-11 | 354 |
vascular associated smooth muscle cell | 2.60e-10 | 32 |
motile cell | 4.59e-08 | 386 |
smooth muscle cell of the subclavian artery | 1.09e-07 | 5 |
fibroblast of gingiva | 1.51e-07 | 5 |
cell of skeletal muscle | 3.26e-07 | 9 |
mesenchymal stem cell of adipose | 5.82e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 3.10e-21 | 73 |
somite | 1.00e-20 | 71 |
presomitic mesoderm | 1.00e-20 | 71 |
presumptive segmental plate | 1.00e-20 | 71 |
dermomyotome | 1.00e-20 | 71 |
trunk paraxial mesoderm | 1.00e-20 | 71 |
paraxial mesoderm | 2.83e-20 | 72 |
presumptive paraxial mesoderm | 2.83e-20 | 72 |
surface structure | 3.99e-20 | 99 |
multilaminar epithelium | 3.12e-18 | 83 |
integument | 4.25e-18 | 46 |
integumental system | 4.25e-18 | 46 |
epithelial vesicle | 8.10e-18 | 78 |
skin of body | 1.97e-16 | 41 |
skeletal muscle tissue | 2.52e-16 | 62 |
striated muscle tissue | 2.52e-16 | 62 |
myotome | 2.52e-16 | 62 |
muscle tissue | 1.62e-15 | 64 |
musculature | 1.62e-15 | 64 |
musculature of body | 1.62e-15 | 64 |
trunk mesenchyme | 7.40e-12 | 122 |
connective tissue | 8.69e-11 | 371 |
adipose tissue | 2.15e-09 | 14 |
artery | 5.12e-09 | 42 |
arterial blood vessel | 5.12e-09 | 42 |
arterial system | 5.12e-09 | 42 |
mesenchyme | 1.09e-08 | 160 |
entire embryonic mesenchyme | 1.09e-08 | 160 |
systemic artery | 1.43e-08 | 33 |
systemic arterial system | 1.43e-08 | 33 |
thoracic segment blood vessel | 1.09e-07 | 5 |
subclavian artery | 1.09e-07 | 5 |
musculoskeletal system | 2.44e-07 | 167 |
unilaminar epithelium | 3.66e-07 | 148 |
trunk | 8.33e-07 | 199 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.45e-09 | 5 |
myotonic disease | 6.45e-09 | 5 |
muscle tissue disease | 6.45e-09 | 5 |
myopathy | 6.45e-09 | 5 |
muscular disease | 6.45e-09 | 5 |
myotonic dystrophy | 6.45e-09 | 5 |