FFCP PHASE1:Hg19::chr19:33572078..33572104,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55094 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24658 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BRR8 | |||
|association_with_transcript=292bp_to_ENST00000170564,NM_018025,uc002nug.1_5end | |||
|cluster_id=chr19:33572078..33572104,+ | |||
|description=CAGE_peak_1_at_GPATCH1_5end | |||
|id=chr19:33572078..33572104,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.11e-08!235;DOID:14566!1.44e-07!239;DOID:0050686!9.30e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.24e-08,235;DOID:14566,1.48e-07,239;DOID:0050686,9.73e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.32e-18!115;UBERON:0001049!4.38e-11!57;UBERON:0005068!4.38e-11!57;UBERON:0006241!4.38e-11!57;UBERON:0007135!4.38e-11!57;UBERON:0002780!6.53e-11!41;UBERON:0001890!6.53e-11!41;UBERON:0006240!6.53e-11!41;UBERON:0001017!1.15e-10!82;UBERON:0005743!1.20e-10!86;UBERON:0000073!1.32e-10!94;UBERON:0001016!1.32e-10!94;UBERON:0000955!1.36e-10!69;UBERON:0006238!1.36e-10!69;UBERON:0003080!5.41e-10!42;UBERON:0001893!7.38e-09!34;UBERON:0002616!8.64e-09!59;UBERON:0002791!1.68e-08!33;UBERON:0002020!3.02e-08!34;UBERON:0003528!3.02e-08!34;UBERON:0001869!4.97e-08!32;UBERON:0003075!1.93e-07!86;UBERON:0007284!1.93e-07!86;UBERON:0002346!4.64e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.69e-08;41!UBERON:0001890;4.69e-08;41!UBERON:0001893;8.26e-08;34!UBERON:0000073;9.77e-08;53!UBERON:0002616;9.77e-08;53!UBERON:0003528;2.53e-07;34!UBERON:0002020;2.53e-07;34!UBERON:0002791;2.93e-07;32!UBERON:0001869;4.21e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.77e-18,114;UBERON:0001049,6.61e-12,56;UBERON:0005068,6.61e-12,56;UBERON:0006241,6.61e-12,56;UBERON:0007135,6.61e-12,56;UBERON:0000073,1.03e-11,53;UBERON:0002616,1.03e-11,53;UBERON:0001017,2.61e-11,81;UBERON:0000955,2.67e-11,68;UBERON:0006238,2.67e-11,68;UBERON:0001016,3.46e-11,89;UBERON:0002780,6.23e-11,41;UBERON:0001890,6.23e-11,41;UBERON:0003080,6.23e-11,41;UBERON:0006240,6.23e-11,41;UBERON:0001893,7.05e-09,34;UBERON:0003528,2.89e-08,34;UBERON:0002020,2.89e-08,34;UBERON:0002791,4.58e-08,32;UBERON:0001869,4.76e-08,32;UBERON:0011216,8.20e-08,223;UBERON:0003075,1.05e-07,82;UBERON:0007284,1.05e-07,82;UBERON:0002346,2.69e-07,86;UBERON:0003056,9.29e-07,61 | |||
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| |||
|short_description=p1@GPATCH1 | |||
}} |
Latest revision as of 06:23, 17 September 2015
Short description: | p1@GPATCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPATCH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 292bp_to_ENST00000170564, NM_018025, uc002nug.1_5end |
EntrezGene: | GPATCH1 |
HGNC: | 24658 |
UniProt: | Q9BRR8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.77e-18 | 114 |
neural tube | 6.61e-12 | 56 |
neural rod | 6.61e-12 | 56 |
future spinal cord | 6.61e-12 | 56 |
neural keel | 6.61e-12 | 56 |
regional part of nervous system | 1.03e-11 | 53 |
regional part of brain | 1.03e-11 | 53 |
central nervous system | 2.61e-11 | 81 |
brain | 2.67e-11 | 68 |
future brain | 2.67e-11 | 68 |
nervous system | 3.46e-11 | 89 |
regional part of forebrain | 6.23e-11 | 41 |
forebrain | 6.23e-11 | 41 |
anterior neural tube | 6.23e-11 | 41 |
future forebrain | 6.23e-11 | 41 |
telencephalon | 7.05e-09 | 34 |
brain grey matter | 2.89e-08 | 34 |
gray matter | 2.89e-08 | 34 |
regional part of telencephalon | 4.58e-08 | 32 |
cerebral hemisphere | 4.76e-08 | 32 |
organ system subdivision | 8.20e-08 | 223 |
neural plate | 1.05e-07 | 82 |
presumptive neural plate | 1.05e-07 | 82 |
neurectoderm | 2.69e-07 | 86 |
pre-chordal neural plate | 9.29e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.24e-08 | 235 |
disease of cellular proliferation | 1.48e-07 | 239 |
organ system cancer | 9.73e-07 | 137 |