FFCP PHASE1:Hg19::chr20:23615923..23615953,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr20:23615923..23615953,- | |||
|coexpression_cluster_id=C4018 | |||
|description=CAGE_peak_at_chr20:23615923..23615953,- | |||
|id=chr20:23615923..23615953,- | |||
|ontology_enrichment_celltype=CL:0002009!8.82e-18!65;CL:0002194!4.97e-17!63;CL:0000576!4.97e-17!63;CL:0000040!4.97e-17!63;CL:0000559!4.97e-17!63;CL:0002057!1.14e-15!42;CL:0000557!2.74e-15!71;CL:0000839!6.59e-14!70;CL:0000860!7.08e-14!45;CL:0000766!3.49e-13!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.64e-17;33!CL:0002057;6.64e-17;33!CL:0000473;7.83e-17;39!CL:0000234;7.83e-17;39!CL:0000576;8.72e-15;48!CL:0000766;5.69e-09;69!CL:0000136;6.84e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,2.52e-25,61;CL:0002194,5.04e-25,59;CL:0000576,5.04e-25,59;CL:0000040,5.04e-25,59;CL:0000559,5.04e-25,59;CL:0000473,9.24e-24,48;CL:0000234,9.24e-24,48;CL:0000557,1.29e-21,67;CL:0000839,1.04e-20,66;CL:0000860,4.14e-20,42;CL:0002057,4.14e-20,42;CL:0000766,7.99e-20,72;CL:0000763,7.96e-11,108;CL:0000049,7.96e-11,108;CL:0002087,4.00e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;3.85e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.44e-22!115;UBERON:0000480!2.91e-18!626;UBERON:0000467!3.41e-18!625;UBERON:0000468!4.39e-18!659;UBERON:0002050!1.05e-16!605;UBERON:0005423!1.05e-16!605;UBERON:0000923!1.21e-16!604;UBERON:0005291!1.21e-16!604;UBERON:0006598!1.21e-16!604;UBERON:0002532!1.21e-16!604;UBERON:0000922!4.38e-16!612;UBERON:0000062!1.21e-15!511;UBERON:0002371!1.33e-14!80;UBERON:0001474!6.66e-13!86;UBERON:0002405!1.04e-12!115;UBERON:0004765!2.85e-12!101;UBERON:0001434!2.85e-12!101;UBERON:0002193!5.37e-12!112;UBERON:0002390!1.40e-11!102;UBERON:0003061!1.40e-11!102;UBERON:0002204!1.64e-11!167;UBERON:0000926!9.87e-11!448;UBERON:0004120!9.87e-11!448;UBERON:0006603!9.87e-11!448;UBERON:0003081!2.36e-09!216;UBERON:0001049!6.83e-09!57;UBERON:0005068!6.83e-09!57;UBERON:0006241!6.83e-09!57;UBERON:0007135!6.83e-09!57;UBERON:0002616!1.52e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.22e-21,76;UBERON:0001474,7.08e-19,82;UBERON:0004765,9.68e-18,90;UBERON:0002405,1.98e-17,93;UBERON:0001434,7.13e-17,100;UBERON:0007023,2.09e-16,114;UBERON:0002390,2.22e-16,98;UBERON:0003061,2.22e-16,98;UBERON:0002193,1.09e-15,108;UBERON:0000923,1.09e-12,560;UBERON:0010316,1.09e-12,560;UBERON:0005291,1.09e-12,560;UBERON:0006598,1.09e-12,560;UBERON:0010317,1.09e-12,560;UBERON:0002532,1.09e-12,560;UBERON:0002050,2.90e-12,564;UBERON:0000926,3.55e-12,315;UBERON:0004120,3.55e-12,315;UBERON:0006603,3.55e-12,315;UBERON:0003081,4.78e-11,203;UBERON:0005423,5.13e-11,581;UBERON:0000922,8.64e-11,592;UBERON:0002204,2.26e-10,167;UBERON:0000479,5.57e-07,773 | |||
|phase1_expression=1.45342703416445,1.49870366723688,1.26858963686374,6.00439790118782,5.81049422755474,3.48935409640147,5.06599756336621,0.631719873426831,2.35067065379855,0,0.697801167972428,0.218441372130172,1.05506791291381,0.123766352960047,0.662794751455832,0,0,0.730310090387373,0,0.246242116153576,0.408001382488506,0.940364164434263,0,0.273748850145768,0.376627918784408,0.0764134057479513,0,0,1.96682138424452,0.383829398097213,1.39334510984468,0.919421224478927,1.204823675113,0.369754010166788,0,0,0,1.10799081706375,0.601633342410425,2.60413044859022,3.13481663935894,1.94336199611388,4.12120908214698,4.36194716338694,3.02300754951048,3.88134497900506,1.39457422143411,1.6446715520873,1.85823822537062,2.8769239232215,5.37937483711111,1.18241114944293,0.689491361473237,1.29096936716765,0,2.07066573496865,3.547779950752,0.898893937780338,1.53041946185451,0.320929027076094,3.19668562899521,4.61791820261403,4.58766412529753,3.40979800426155,1.45104619314292,2.26954089876456,1.24564449799115,1.00499466102697,3.12889751052121,0.65156653411535,3.02699751316684,1.10483290796269,2.21523671208619,2.95757400836718,1.70083439972035,2.09658645508376,1.57260083605093,1.50176892841506,2.08943262706204,1.71007646244749,0.99458338599545,0.91332076882317,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.255725123687061,0.361439152384566,0,1.01392563272577,0,0.973269740605272,0.283604451492204,0.443458794925128,0.43917392846563,0.523916301990851,0,0.370784442784429,12.0082535652233,9.75126528875897,9.44001519683943,0.953962497221368,0,0.74291500265913,0,0,0.694281003215189,1.13061588384802,0.419499436209906,0.275118041940067,0.208994966536811,1.29208379584664,0.71153252537342,0.33472061276467,0,0,0,0,0.81014194788176,0.0892997282840798,1.12264686313085,0.337834441449967,0,0,0.366403487860815,0,0,0,0.993943903390637,0.379891534993739,0,1.43418310374407,0.354668382198357,1.12135520028461,0,0.98667019366864,2.17847724779836,0.269421344139376,0.326923806226917,0.302714855289863,0.576175924479999,0,2.80944069147288,0.570471821544449,1.64393548606981,0.23486899728753,0.323745888736263,0,0,0.122834317311768,0.619954687054593,2.37600571456411,0.494533858557114,0.910161361938026,1.43723628363248,0,0.375355559615893,0.554128230968366,0.438977620880838,0.30648779579902,0.751190294532984,0.226864366320042,0.179389635688862,0.213557388818567,0,0.300091096084402,0.206105058476878,0.515281080091258,0.18611685633159,0.168776332241266,0.194874010322397,0,0.184099797284599,0.323292113637624,0.355009592516614,0.201504196455281,0.169560592310488,0.193260853163297,0.272746120590835,0.573609190778008,0,0,0,0.10366105501537,0,0,0,0.643240938192885,1.38134921352481,0,2.16563844500876,0.354920400119532,0.168584690078102,0,0,0.217879444092406,0.237270619111097,0.539325232640658,0,1.15424147083917,0.738155454624648,0,0.4115740113314,1.47008711385542,1.26755034821831,0.982827216677626,0.590789906681404,0,0.614942192715568,0.343135620597051,0.98775256867763,0,0.301586917234893,0.277765335475589,0,0,0,0,0.234817388471643,0.433099343283221,0,0.951270761172991,0,0,2.46217006087397,0.234004265139238,1.48631162288728,0.93733833986777,0,0.141775097242386,0,0.290633938513962,1.15014803749563,0.985326475791887,0.088048434013226,0,0.144119953416961,0.25248486685276,0.126995788584338,0.381988425558278,0,0,0.822619941626588,0.600686115687835,0,0.336393253036082,0.43596006883328,0.22001485746285,0.258543431515556,10.7296933755565,1.690605505112,0.531876233169741,1.04007436911366,0,4.25547396069835,0.266422179016099,0.142977993658148,0.542621605391443,0.823240336780769,0,0,0.791951872933429,0.602878754119172,0.871533458600294,0.399891964728228,8.51366464488333,3.01354254859276,8.43335757932127,0,0,0,0.579125226670317,0.410952645100767,0.179060963239896,0,0,0,0.128343036279748,0.254094624222463,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0.414415513436035,0.613457458595699,4.00136416847742,1.62759014219841,1.03985430765404,1.07057393278297,0.630809660135739,0.585707074963566,1.20378439891088,13.6444502433591,4.1389228517002,0,0,0.347534457872331,0.587403472388222,1.71571711905428,0.413536052245775,1.2942852049117,1.28073069364133,0.303127571446259,0,1.5119514666484,0.248107807818777,0,1.96462066103151,1.53766979106841,0.511707249066704,1.28683136914886,2.96836132889982,0.308419387605311,0.710246901252508,0.0821271560138091,0,0.116210378459959,1.0877350463246,0.200506470303285,0.644566922551274,0.114814448164607,0.728364672026868,1.18011973463482,0.902399225814824,0.231046011313244,0,0,0.633309773357254,0,0.850468526382578,0.431831832204279,1.54227252690289,0,2.50844886927427,0.254876273045038,0,1.79099803777743,0,0,0,0.656029291399411,0.325378394664303,0.515205058238611,0.27470839445503,0.165018999841176,0,0.650060246036521,1.6068392984416,0.193341436584244,0.462145851343933,0.460511024178389,0.413509717453592,0.214840489736547,0.435050081742686,0.340906509664404,0.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| |||
|short_description=p@chr20:23615923..23615953,- | |||
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Latest revision as of 12:34, 28 July 2015
Short description: | p@chr20:23615923..23615953, - |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:23615923..23615953, - |
Coexpression cluster: | C4018_occipital_Osteoblast_brain_Dendritic_Monocytederived_submaxillary_Adipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 2.52e-25 | 61 |
monopoietic cell | 5.04e-25 | 59 |
monocyte | 5.04e-25 | 59 |
monoblast | 5.04e-25 | 59 |
promonocyte | 5.04e-25 | 59 |
defensive cell | 9.24e-24 | 48 |
phagocyte | 9.24e-24 | 48 |
granulocyte monocyte progenitor cell | 1.29e-21 | 67 |
myeloid lineage restricted progenitor cell | 1.04e-20 | 66 |
classical monocyte | 4.14e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.14e-20 | 42 |
myeloid leukocyte | 7.99e-20 | 72 |
myeloid cell | 7.96e-11 | 108 |
common myeloid progenitor | 7.96e-11 | 108 |
nongranular leukocyte | 4.00e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.22e-21 | 76 |
bone element | 7.08e-19 | 82 |
skeletal element | 9.68e-18 | 90 |
immune system | 1.98e-17 | 93 |
skeletal system | 7.13e-17 | 100 |
adult organism | 2.09e-16 | 114 |
hematopoietic system | 2.22e-16 | 98 |
blood island | 2.22e-16 | 98 |
hemolymphoid system | 1.09e-15 | 108 |
germ layer | 1.09e-12 | 560 |
germ layer / neural crest | 1.09e-12 | 560 |
embryonic tissue | 1.09e-12 | 560 |
presumptive structure | 1.09e-12 | 560 |
germ layer / neural crest derived structure | 1.09e-12 | 560 |
epiblast (generic) | 1.09e-12 | 560 |
embryonic structure | 2.90e-12 | 564 |
mesoderm | 3.55e-12 | 315 |
mesoderm-derived structure | 3.55e-12 | 315 |
presumptive mesoderm | 3.55e-12 | 315 |
lateral plate mesoderm | 4.78e-11 | 203 |
developing anatomical structure | 5.13e-11 | 581 |
embryo | 8.64e-11 | 592 |
musculoskeletal system | 2.26e-10 | 167 |
tissue | 5.57e-07 | 773 |