FFCP PHASE1:Hg19::chr2:176987463..176987479,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3235 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5140 | |||
|TSSclassifier=strong | |||
|UniProt=P28356 | |||
|association_with_transcript=50bp_to_NM_014213,uc010zex.1_5end | |||
|cluster_id=chr2:176987463..176987479,+ | |||
|coexpression_cluster_id=C4149 | |||
|description=CAGE_peak_2_at_HOXD9_5end | |||
|id=chr2:176987463..176987479,+ | |||
|ontology_enrichment_celltype=CL:1000449!4.95e-11!16;CL:1000497!2.23e-10!18;CL:0002518!2.23e-10!18;CL:1000507!1.49e-09!12;CL:1000494!1.49e-09!12;CL:0002681!1.63e-08!13;CL:0002584!1.63e-08!13;CL:0002078!2.35e-08!44;CL:0002139!1.25e-07!24;CL:0005020!2.20e-07!6;CL:0002138!2.20e-07!6;CL:0005022!2.20e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.07e-19;15!CL:1000507;4.35e-17;10!CL:1000494;4.35e-17;10!CL:0002681;5.97e-17;12!CL:0002584;5.97e-17;12!CL:1000497;9.05e-17;17!CL:0002518;9.05e-17;17!CL:0002138;6.06e-14;6!CL:0002078;4.46e-12;45!CL:0002139;2.31e-11;24!CL:0000115;7.96e-09;36!CL:0002144;1.47e-08;3!CL:0000239;5.61e-08;3!CL:1000615;5.61e-08;3!CL:0002306;5.61e-08;3!CL:1000746;1.21e-07;7!CL:1000612;1.21e-07;7!CL:0000213;5.82e-07;58!CL:0000215;5.82e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,3.47e-19,15;CL:1000507,4.51e-17,10;CL:1000494,4.51e-17,10;CL:0002681,1.30e-16,12;CL:0002584,1.30e-16,12;CL:1000497,1.42e-16,17;CL:0002518,1.42e-16,17;CL:0002078,3.59e-15,45;CL:0005020,4.17e-14,6;CL:0002138,4.17e-14,6;CL:0005022,4.17e-14,6;CL:0002139,1.76e-11,24;CL:0000115,8.32e-11,36;CL:0000213,2.47e-10,58;CL:0000215,2.47e-10,58;CL:0002144,1.48e-08,3;CL:0000239,7.04e-08,3;CL:1000615,7.04e-08,3;CL:0002306,7.04e-08,3;CL:1000746,1.57e-07,7;CL:1000612,1.57e-07,7 | |||
|ontology_enrichment_development_v019=CL:0005022;6.06e-14;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004876!2.03e-14!20;UBERON:0003887!3.02e-14!21;UBERON:0000080!5.48e-13!18;UBERON:0002120!5.48e-13!18;UBERON:0004875!5.48e-13!18;UBERON:0005721!5.48e-13!18;UBERON:0005754!5.48e-13!18;UBERON:0007297!5.48e-13!18;UBERON:0006555!5.32e-12!17;UBERON:0005103!5.32e-12!17;UBERON:0000083!5.32e-12!17;UBERON:0009201!5.32e-12!17;UBERON:0004819!5.32e-12!17;UBERON:0006553!5.32e-12!17;UBERON:0003074!5.32e-12!17;UBERON:0003060!5.32e-12!17;UBERON:0002113!2.73e-11!27;UBERON:0003918!2.73e-11!27;UBERON:0005095!2.73e-11!27;UBERON:0007687!2.73e-11!27;UBERON:0004211!4.95e-11!16;UBERON:0001285!4.95e-11!16;UBERON:0007684!4.95e-11!16;UBERON:0003220!4.95e-11!16;UBERON:0004208!4.95e-11!16;UBERON:0000489!2.15e-10!32;UBERON:0002465!3.94e-10!10;UBERON:0000058!7.40e-10!26;UBERON:0003064!1.42e-09!37;UBERON:0009773!1.49e-09!12;UBERON:0001231!1.49e-09!12;UBERON:0004810!1.49e-09!12;UBERON:0001473!4.20e-09!8;UBERON:0004536!4.20e-09!8;UBERON:0006558!4.20e-09!8;UBERON:0003886!7.21e-09!63;UBERON:0002199!1.10e-08!45;UBERON:0002416!1.10e-08!45;UBERON:0001225!1.63e-08!13;UBERON:0008987!1.63e-08!13;UBERON:0001008!2.26e-08!45;UBERON:0002097!2.56e-08!40;UBERON:0006554!7.80e-08!44;UBERON:0001851!3.63e-07!16;UBERON:0002553!5.44e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.07e-19;15!UBERON:0004819;2.07e-19;15!UBERON:0001285;2.07e-19;15!UBERON:0007684;2.07e-19;15!UBERON:0001473;1.34e-17;8!UBERON:0004536;1.34e-17;8!UBERON:0006558;1.34e-17;8!UBERON:0004211;4.35e-17;10!UBERON:0009773;4.35e-17;10!UBERON:0001231;4.35e-17;10!UBERON:0004810;4.35e-17;10!UBERON:0001225;5.97e-17;12!UBERON:0008987;5.97e-17;12!UBERON:0002113;9.88e-16;24!UBERON:0011143;9.88e-16;24!UBERON:0002465;9.33e-14;10!UBERON:0006554;1.24e-13;30!UBERON:0001008;1.24e-13;30!UBERON:0001851;4.17e-13;15!UBERON:0000353;4.17e-13;15!UBERON:0000489;2.18e-12;29!UBERON:0005904;3.00e-10;4!UBERON:0010523;1.47e-08;3!UBERON:0001915;1.47e-08;3!UBERON:0001982;1.47e-08;3!UBERON:0006947;4.44e-08;3!UBERON:0004054;4.44e-08;3!UBERON:0006853;5.61e-08;3!UBERON:0007685;5.61e-08;3!UBERON:0004134;5.61e-08;3!UBERON:0000074;1.21e-07;7!UBERON:0001229;1.21e-07;7!UBERON:0003135;1.57e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006555,3.03e-21,16;UBERON:0004819,3.03e-21,16;UBERON:0004211,3.47e-19,15;UBERON:0009773,3.47e-19,15;UBERON:0001231,3.47e-19,15;UBERON:0001285,3.47e-19,15;UBERON:0007684,3.47e-19,15;UBERON:0004208,3.47e-19,15;UBERON:0002113,4.54e-19,26;UBERON:0003918,4.54e-19,26;UBERON:0011143,4.54e-19,26;UBERON:0005095,4.54e-19,26;UBERON:0007687,4.54e-19,26;UBERON:0001473,8.44e-18,8;UBERON:0004536,8.44e-18,8;UBERON:0006558,8.44e-18,8;UBERON:0004810,4.51e-17,10;UBERON:0001225,1.30e-16,12;UBERON:0008987,1.30e-16,12;UBERON:0000489,2.79e-15,31;UBERON:0002465,6.49e-14,10;UBERON:0001851,7.65e-13,15;UBERON:0000353,7.65e-13,15;UBERON:0001008,2.58e-12,48;UBERON:0004876,4.35e-12,11;UBERON:0000080,1.78e-11,9;UBERON:0002120,1.78e-11,9;UBERON:0004875,1.78e-11,9;UBERON:0005721,1.78e-11,9;UBERON:0005754,1.78e-11,9;UBERON:0007297,1.78e-11,9;UBERON:0006554,2.59e-11,47;UBERON:0005904,3.10e-10,4;UBERON:0005103,1.83e-09,8;UBERON:0000083,1.83e-09,8;UBERON:0009201,1.83e-09,8;UBERON:0006553,1.83e-09,8;UBERON:0003074,1.83e-09,8;UBERON:0003060,1.83e-09,8;UBERON:0010523,1.48e-08,3;UBERON:0001915,1.48e-08,3;UBERON:0001982,1.48e-08,3;UBERON:0003887,2.57e-08,12;UBERON:0006947,4.22e-08,3;UBERON:0004054,4.22e-08,3;UBERON:0000058,4.24e-08,19;UBERON:0005172,5.36e-08,54;UBERON:0005173,5.36e-08,54;UBERON:0006853,7.04e-08,3;UBERON:0007685,7.04e-08,3;UBERON:0004134,7.04e-08,3;UBERON:0003135,1.52e-07,11;UBERON:0010532,1.57e-07,7;UBERON:0000074,1.57e-07,7;UBERON:0001229,1.57e-07,7;UBERON:0001230,1.57e-07,7;UBERON:0003220,1.57e-07,7;UBERON:0005749,1.57e-07,7;UBERON:0004199,1.57e-07,7;UBERON:0004209,1.57e-07,7;UBERON:0004198,1.57e-07,7;UBERON:0002417,8.50e-07,60;UBERON:0000916,8.50e-07,60 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0,0,0,0.872338524100369,0,0.631719873426831,0.261185628199839,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.289693037921647,0,0,0,0,0,4.45328856692223,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,1.55050055501597,3.5576626268671,3.3472061276467,4.43112248820062,7.60272105718513,5.12530320851156,1.47065232138347,1.62028389576352,0.446498641420399,0,0.337834441449967,1.53316637465883,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704606991862589,0.161872944368132,0.280901613404497,0,0,0,0,0,1.82032272387605,2.15585442544872,0,0,0,0,0,0,0,1.25572744982203,1.70845911054854,0,0.600182192168805,0.309157587715317,2.31876486041066,0.744467425326359,0.843881661206331,0.584622030967192,1.00973509697646,0.552299391853796,0,0.355009592516614,0.604512589365842,0,0,0,0,0,0,0,0,0,0,0,1.28648187638577,4.14404764057442,1.85747171212792,0,0.946454400318751,0.674338760312407,0.723033089650446,1.21323370005633,0.217879444092406,0,0.808987848960987,1.56977172100277,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7429625074604,5.09284063834272,2.47330397904978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0.571652865261156,0,0,0,0.387815147273333,3.57656445851882,0,2.39344304926383,0,0,0,0,0,0.542621605391443,0,0.325736184293735,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,2.10662269809403,2.27407504055985,1.03473071292505,0,0.737476674166813,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,1.40330047216537,0,0.511707249066704,0,1.48418066444991,0,0.355123450626254,0.246381468041427,0,0,0.120859449591622,0,0,0,0,0,2.25599806453706,1.23224539367064,4.70609861506113,2.92278449306521,0.73886140225013,1.13733384070897,0.510281115829547,2.15915916102139,3.08454505380579,1.62567862526312,1.50506932156456,2.29388645740534,6.64860807142979,2.23874754722178,0,0.261435451024901,0,0,0,0.618246069886334,0.457847324091717,0.330037999682352,0,0,3.21367859688319,0.676695028044854,0.154048617114644,0,0,0,0.145016693914229,0.255679882248303,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0.354761064070598,1.89996871767898,1.31717957183961,0,0,0,0,0,0.564862804660675,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0.121360521749513,0,0,0.23874448473769,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0.724999575434793,0,0,7.09163045303809,1.03423011972439,2.33283690706603,0.520874984799877,0,0,0,0,0,0,0,0,3.38581137416707,0,0,0.0897576444097721,2.49888955420619,0.31900115973192,1.28236630762607,2.13213910407454,0,0,0,0,0,0,0,0,1.89898258075224,0.326465616318295,0,0.432777279484182,0.995261931078505,0.353830258013357,0,0,0,0,0,0,0,0,0,0,2.36750641709634,0,0,0.442306057399416,0,0,0,0,0,0,0,0,1.21491816834592,0,0.522355239482415,3.66926003308263,0.859930162358083,0.870806981601766,0.511625219603299,0.739039113478883,0.484945082442097,1.85337866052151,0,0.274083849293502,0.19871461170299,0,0,0,1.06726497369676,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0.984274815147488,0,0,0,0,0,0,0,0,0,0.335434687599266,6.30445658393585,11.5400093896996,0,0,0,0,0,0,0,0,1.30634944043764,0,0,0,0.339936274560377,0,0,0,0,0,0,0,0,0.414239055347196,0.992332043623902,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0.454947352624943,0,0,1.87333962322753,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0.899606224327209,0,0,0,0.521745061811734,0.150257608997218,1.14241563650639,0,0.363697318405119,0.429642228169954,0.928067519756987,1.99047944349308,0,1.37358282073117,0.673498977531838,0,0,0,0,0,0,1.22368352253234,0,0.308801447160972,0,0,0,0,0,0,1.51929978088691,0,0,0,0,0,0,0.422624246717254,0,0,0,0,1.47284760201473,0,0,0.76736622782191,0.646948868380091,14.4684666507425,2.73024095480035,0,3.61377364172861,2.35477952092104,1.67593475391973,0,0,2.40171224485641,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795664888465099,2.03067886542995,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0.527613733078862,0,0,0,0,0,0.354809480650555,0.115233987555779,0,0,0,0.118193840883968,0,2.51177897121645,0,0,0.913158720509496,0.215927591218621,0,0,0,0.697448552208751,0.869291361512897,0,0,0,0,0,0.828324005113957,0.511280428554946,4.23387050190929,0.68732060563215,0,0,2.68453036314702,0,0,0,0.513314034281235,0,1.94284397223656,0,0,0.237840181555137,0,0.1099405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| |||
|short_description=p2@HOXD9 | |||
}} |
Latest revision as of 09:01, 18 September 2015
Short description: | p2@HOXD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXD9_5end |
Coexpression cluster: | C4149_neuroblastoma_kidney_Endothelial_uterus_Renal_smallcell_bronchogenic |
Association with transcript: | 50bp_to_NM_014213, uc010zex.1_5end |
EntrezGene: | HOXD9 |
HGNC: | 5140 |
UniProt: | P28356 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 3.47e-19 | 15 |
kidney tubule cell | 4.51e-17 | 10 |
nephron tubule epithelial cell | 4.51e-17 | 10 |
kidney cortical cell | 1.30e-16 | 12 |
renal cortical epithelial cell | 1.30e-16 | 12 |
kidney cell | 1.42e-16 | 17 |
kidney epithelial cell | 1.42e-16 | 17 |
meso-epithelial cell | 3.59e-15 | 45 |
lymphangioblast | 4.17e-14 | 6 |
endothelial cell of lymphatic vessel | 4.17e-14 | 6 |
vascular lymphangioblast | 4.17e-14 | 6 |
endothelial cell of vascular tree | 1.76e-11 | 24 |
endothelial cell | 8.32e-11 | 36 |
lining cell | 2.47e-10 | 58 |
barrier cell | 2.47e-10 | 58 |
capillary endothelial cell | 1.48e-08 | 3 |
brush border epithelial cell | 7.04e-08 | 3 |
kidney cortex tubule cell | 7.04e-08 | 3 |
epithelial cell of proximal tubule | 7.04e-08 | 3 |
glomerular cell | 1.57e-07 | 7 |
kidney corpuscule cell | 1.57e-07 | 7 |