FFCP PHASE1:Hg19::chr2:20425158..20425206,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6382 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10658 | |||
|TSSclassifier=strong | |||
|UniProt=P18827 | |||
|association_with_transcript=0bp_to_ENST00000381150,NM_001006946,uc002rdp.1_5end | |||
|cluster_id=chr2:20425158..20425206,- | |||
|coexpression_cluster_id=C572 | |||
|description=CAGE_peak_6_at_SDC1_5end | |||
|id=chr2:20425158..20425206,- | |||
|ontology_enrichment_celltype=CL:0000066!4.78e-31!254;CL:0002076!4.29e-16!43;CL:0000223!4.20e-15!59;CL:0002321!6.84e-14!248;CL:0000220!9.27e-14!246;CL:0002368!1.54e-08!13;CL:0000221!1.39e-07!71;CL:0000082!3.36e-07!19;CL:0002251!6.37e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;9.21e-14;42!CL:0002368;1.45e-09;13!CL:0002251;3.82e-08;20!CL:0000082;5.09e-08;19!CL:0002202;3.42e-07;9!CL:0002632;3.42e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.20e-28,253;CL:0002076,7.26e-19,42;CL:0000223,5.49e-17,58;CL:0002321,4.96e-11,250;CL:0002368,1.10e-09,13;CL:0002251,4.08e-08,20;CL:0000082,8.86e-08,19;CL:0002202,3.44e-07,9;CL:0002632,3.44e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;1.54e-09;58!UBERON:0001041;2.25e-08;30 | |||
|ontology_enrichment_disease=DOID:305!9.47e-16!106;DOID:0050687!2.86e-15!143;DOID:1749!8.47e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.05e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.88e-14,106;DOID:0050687,6.27e-13,143;DOID:1749,7.99e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.32e-27!169;UBERON:0000925!6.32e-27!169;UBERON:0006595!6.32e-27!169;UBERON:0001007!1.74e-21!155;UBERON:0001555!1.74e-21!155;UBERON:0007026!1.74e-21!155;UBERON:0000475!1.97e-17!365;UBERON:0004921!6.29e-17!129;UBERON:0004185!6.29e-17!129;UBERON:0000077!9.38e-17!130;UBERON:0000466!1.99e-16!126;UBERON:0000481!7.70e-15!347;UBERON:0000464!7.90e-15!104;UBERON:0003104!9.45e-15!238;UBERON:0009142!9.45e-15!238;UBERON:0001004!1.67e-14!72;UBERON:0005911!1.90e-13!82;UBERON:0002100!1.91e-12!216;UBERON:0009569!2.34e-12!113;UBERON:0001041!2.90e-12!98;UBERON:0001048!9.86e-12!168;UBERON:0005153!2.40e-11!37;UBERON:0003102!3.88e-11!95;UBERON:0005177!4.97e-11!107;UBERON:0000065!1.13e-10!53;UBERON:0005178!2.26e-10!34;UBERON:0002224!2.26e-10!34;UBERON:0000064!4.59e-10!219;UBERON:0000468!5.57e-10!659;UBERON:0000062!7.15e-10!511;UBERON:0008947!1.11e-09!38;UBERON:0003258!1.11e-09!38;UBERON:0005181!1.42e-09!35;UBERON:0000161!9.17e-09!35;UBERON:0000480!1.70e-08!626;UBERON:0005157!1.93e-08!51;UBERON:0002048!2.76e-08!22;UBERON:0000117!2.76e-08!22;UBERON:0000171!2.76e-08!22;UBERON:0000170!2.76e-08!22;UBERON:0005597!2.76e-08!22;UBERON:0000118!2.76e-08!22;UBERON:0001444!3.06e-08!48;UBERON:0000467!3.37e-08!625;UBERON:0001008!4.14e-08!45;UBERON:0000072!6.15e-08!46;UBERON:0000915!6.99e-08!52;UBERON:0003100!8.29e-08!41;UBERON:0006554!8.55e-08!44;UBERON:0000063!1.10e-07!97;UBERON:0000922!2.53e-07!612;UBERON:0004802!3.36e-07!19;UBERON:0000115!3.36e-07!19;UBERON:0000119!4.45e-07!312;UBERON:0000166!6.81e-07!21;UBERON:0005156!9.84e-07!59;UBERON:0000990!9.84e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0005178;1.31e-10;34!UBERON:0002224;1.31e-10;34!UBERON:0005181;5.11e-10;35!UBERON:0004807;1.04e-09;22!UBERON:0002048;3.38e-09;22!UBERON:0000117;3.38e-09;22!UBERON:0000171;3.38e-09;22!UBERON:0000170;3.38e-09;22!UBERON:0005911;3.15e-08;36!UBERON:0004802;5.09e-08;19!UBERON:0000115;5.09e-08;19!UBERON:0000065;1.74e-07;44!UBERON:0006554;5.51e-07;30!UBERON:0001008;5.51e-07;30!UBERON:0001004;6.71e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.80e-27,160;UBERON:0000925,3.80e-27,160;UBERON:0006595,3.80e-27,160;UBERON:0001007,1.16e-21,145;UBERON:0001555,1.16e-21,145;UBERON:0007026,1.16e-21,145;UBERON:0004921,2.82e-17,118;UBERON:0001004,5.42e-15,74;UBERON:0005911,6.95e-14,82;UBERON:0005177,1.40e-13,101;UBERON:0001041,2.41e-13,87;UBERON:0009569,5.61e-12,112;UBERON:0005178,1.00e-11,34;UBERON:0002224,1.00e-11,34;UBERON:0005153,2.58e-11,37;UBERON:0002100,3.20e-11,199;UBERON:0005181,5.02e-11,35;UBERON:0000065,1.80e-10,54;UBERON:0001048,5.12e-10,160;UBERON:0005157,1.31e-09,47;UBERON:0008947,1.38e-09,38;UBERON:0003258,1.38e-09,38;UBERON:0003102,2.61e-09,99;UBERON:0001008,3.64e-09,48;UBERON:0002048,4.91e-09,22;UBERON:0000117,4.91e-09,22;UBERON:0000171,4.91e-09,22;UBERON:0000170,4.91e-09,22;UBERON:0005597,4.91e-09,22;UBERON:0000118,4.91e-09,22;UBERON:0006554,8.33e-09,47;UBERON:0000161,1.04e-08,36;UBERON:0000915,1.11e-08,52;UBERON:0004802,8.86e-08,19;UBERON:0000115,8.86e-08,19;UBERON:0000166,1.23e-07,22;UBERON:0000033,1.31e-07,56;UBERON:0000072,1.71e-07,47;UBERON:0001444,2.64e-07,49;UBERON:0003100,6.08e-07,41 | |||
|phase1_expression=0.181678379270557,0.856402095563933,0.704772020479856,2.00146596706261,0.893922188854576,0,0,0,0,4.66894479352867,17.4450291993107,5.24259293112413,8.96807725976742,0,0,0.672325146451775,2.41077811209591,1.46062018077475,4.39139518911456,3.20114750999649,6.5280221198161,1.88072832886853,2.86235987131057,4.92747930262383,2.13422487311165,1.37544130346312,1.06730766284929,1.02324015707783,0,0,0,11.0330546937471,11.4458249135735,17.378438477839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.511450247374121,1.44575660953827,0.50133791063589,0.289693037921647,0.795285947051099,0.973269740605272,2.17430079477356,2.4390233720882,2.19586964232815,3.47094550068939,15.6646973965793,12.6066710546706,0,0.174129737299267,0.132957960518865,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0.516833518338658,0.35576626268671,1.00416183829401,0,1.52054421143703,0.24406205754817,0,0,0.267899184852239,0,0.225222960966644,1.53316637465883,0,0.549605231791222,0,0,10.9023513035634,0,1.01304409331664,0.662045904066094,0.860509862246441,1.77334191099179,1.12135520028461,0,1.48000529050296,0.311211035399766,0.269421344139376,0.163461903113459,0.605429710579726,0.576175924479999,0.468642863667593,1.24864030732128,0,0.149448680551801,0.939475989150119,0.485618833104395,1.40450806702248,0,0.737005903870608,0.206651562351531,4.75201142912821,1.97813543422845,0.910161361938026,0,1.0100166837244,1.00094815897571,0.554128230968366,2.19488810440419,0.30648779579902,0.751190294532984,0.113432183160021,3.94657198515496,0.427114777637135,0.635795703478686,5.40163972951924,1.95799805553034,0.772921620136887,1.48893485065272,2.36286865137773,3.02054715999716,0.757301322732344,0.460249493211497,2.10139873864455,3.55009592516614,1.41052937518696,2.20428770003634,5.41130388857231,5.72766853240753,5.16248271700207,1.21973706129595,1.32529768321485,0.69716365721711,1.7622379352613,1.00928340350251,1.45990943630332,1.56449532329816,4.5026865673502,5.52539685409922,0.464367928031979,0,1.30137480043828,0.842923450390509,1.92808823906786,1.54411561825352,1.30727666455444,1.66089433377768,1.48314438976181,0.98110732562673,0.38474715694639,0,0,1.2347220339942,0,5.07020139287323,6.87979051674338,2.95394953340702,0,2.95172252503473,1.20097467208968,6.58501712451753,12.3641928583382,13.068766413512,7.59225250299943,0.977424915930974,0,1.44331342025273,2.89826012437692,0.821860859650752,0,0,0,9.4824527755113,5.15091697256924,0,0.234004265139238,0.148631162288728,0.93733833986777,4.53551746136921,4.11147782002921,6.08997954379368,6.68458058582112,18.4023685999301,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0.063497894292169,0.381988425558278,1.17217447210047,0,0,0.901029173531752,0,3.81245686774226,2.1798003441664,1.98013371716565,1.55126058909333,0,0,2.12750493267896,0,0,0,1.0656887160644,0,4.88359444852299,0.823240336780769,0.65147236858747,0.710783897485092,1.58390374586686,0.602878754119172,0,0.499864955910285,0,0,0,0.718874566474748,2.29723871668228,2.85273810081437,0.144781306667579,0.205476322550383,0.895304816199478,0,0,0,0,0.508189248444927,0,1.54657762555539,1.84267891867784,1.27587750330633,0,0,0,0.12269149171914,0,0.542530047399471,0.831883446123229,0.892144943985809,2.20783381047509,1.99140405487612,0,2.27407504055985,2.0694614258501,1.99267679560631,1.29058417979192,2.34585759063824,3.13281851940385,2.74514739048685,0,0,0,3.63753085735511,3.32870879020994,7.86214762657169,1.24053903909388,1.53461973288062,0.841980283299221,0.640695746278505,2.55853624533352,0.64341568457443,0,1.85051632563187,2.84098760501003,2.38168752440047,2.07701771673448,2.32420756919918,1.93375119346596,9.82481704486096,22.0073563556792,0.34444334449382,0.182091168006717,0.786746489756545,7.21919380651859,4.08181286653398,2.35304930753057,0,2.95544560900052,2.27466768141793,0.850468526382578,1.0795795805107,1.54227252690289,1.08378575017541,7.5253466078228,5.60727800699084,10.8039881160734,5.37299411333228,0,0,4.35965212697862,0,1.30151357865721,2.67906630284078,1.19040304263846,0.41254749960294,6.89118645595407,4.55042172225565,1.6068392984416,1.7400729292582,0.616194468458578,0.460511024178389,0.413509717453592,0.214840489736547,0.290033387828457,1.27839941124151,0.267096106940212,7.93367593732695,7.87979276196935,2.93509238737543,11.8354603600993,1.39453664789186,3.1481234683064,2.0911118104818,0,0,3.47973196830029,0.74129687641568,0,1.86079184679834,1.2655176988749,1.33441135746677,1.27948895655667,0.42793898803392,1.90921948755562,0,1.2591072030832,1.37268514868027,1.7671860351853,1.01091240786658,0,1.26377536871694,1.46290121726877,0.487426979262569,1.05650146756755,1.09199929126389,0.848432591722276,2.26016233240486,1.65409603063837,0,0,1.15755106853338,1.31178950409327,0.608731130888112,1.54911749049875,1.12678241012897,1.00387946542836,0.982490410131212,0,1.06428319221179,0.211107635297664,0.329294892959902,2.65631221636001,3.14941248220485,6.44688155260931,8.04362730642945,5.44454924306613,2.91845782408015,12.0541504347944,8.42357378338128,18.6240664485404,8.27004240745054,0,0,0,0,0,0,0,0,0.320472213382419,0,4.6557641036396,0.371606350251437,1.87549976869378,0,0.637705090915289,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0.425846237690326,0,0,0.223676107892416,0,0,0,0,0,0,0,3.7428108081644,0.586032717087576,1.45632626099416,0,2.55722532125772,2.62618933211459,0.890894042497916,3.07160702099232,0,0.281338832821026,1.22439575525196,0,6.96713846822378,1.19548792950642,0,0.251932747854276,1.73856760253663,3.81562896929315,0,2.96565558786179,7.16084698702437,0,1.57829449019094,0,0,0,0.0927680981618513,1.99613798001194,1.82299432759663,8.39615999963479,1.44999915086959,2.61724931056649,5.84783395673362,0.472775363535873,0.344743373241465,0.291604613383254,0.694499979733169,0,0.120596438625408,0,0.221158519862449,0.886642856860642,0.658156191461918,1.63407695278485,11.4327470308455,2.92410982314429,0.683652335082007,5.99466151408956,1.34636466614658,0.54323685961004,0.638002319463839,2.83952539545773,1.06606955203727,0,0,0,0,0,0,0,0,1.05499032264014,0.979396848954886,1.27217764290547,1.08194319871046,3.98104772431402,4.42287822516696,1.83309043480088,0.296521128680622,0.370691816839509,0.208843899010911,0.067401132980677,0,0.234264445725339,0,1.36965233252463,0.242780379534093,1.18375320854817,2.41981432097328,2.14250933141343,0.63186579628488,0.150323419414493,0.414752765588989,1.32930774541437,0,0.627865836814451,0,3.13070500632772,1.94144542218394,1.73559738335131,6.5654906267633,4.35296032902013,2.09672001890436,3.26773461696071,1.06431964417994,1.31560770755134,0.821154570532092,5.81934098930517,0.0882561266915003,5.19755703795225,5.75576083516354,0.993573058514948,0.126621591911757,11.1464288158838,4.08809983282822,12.5937266896218,0.39961921916426,1.72908500584927,0.572682980829578,0.514784993585894,2.59298636378669,0.869767748958028,3.77110455386873,1.9026588850306,1.98745407993433,0.407992870545287,2.31160471921215,0.600420288709789,0.136905378891993,0,0.859530882839914,2.10309883423452,0,0,0,0.798716001995964,0,0,0.201550417460179,1.44119953416961,0,6.77535367842123,6.51085281211215,6.40333666614756,1.67326718575073,0,0,0,0.964518890790115,2.06309154895851,0,0.2249738915515,1.5476039091159,0.182248669974074,10.7339100031765,4.88595385255029,4.66845834401483,1.26720403823288,1.43429871466276,9.21192947133337,0,0,1.5256112259285,6.51599522104455,1.72844298240254,1.95952416065645,1.19730191562487,0.082092520749339,2.55582032678133,1.47305718976163,5.71553711344522,5.30027555648885,0.775697738169303,0,3.42173675768659,2.11444506695002,3.84434685243701,4.24451623769098,2.89967338743037,0.992332043623902,6.7187954845301,0,2.55336503108073,0,0,0,0.327872630709804,8.48092119751265,0,0,0.1251909307065,0,0.110929051536852,0.124192805882767,0.415045904808692,6.87392243791586,0.151649117541648,0.285465333544967,0.941063278792687,3.74667924645505,3.18826262943815,1.04478362020812,1.16856654923612,1.10961172300523,0.568209015825267,0,0.889811221596536,1.83072054717539,0.302461847526478,2.33155800874171,1.77426179987561,1.59296767163702,0.449803112163605,1.24210365501008,0.414706207840855,1.59505028734797,1.5652351854352,0.450772826991655,0.380805212168795,0.813741466409323,3.09142720644351,0.322231671127465,2.78420255927096,0.398095888698616,1.20008329398946,1.37358282073117,3.03074539889327,0,0,1.71553273099941,0.521988583930423,0.453411851024545,1.85217979459067,0.734210113519403,4.47722102703719,2.16161013012681,1.75427239662966,4.06385035675526,3.08662461233464,0.844712203265363,2.04993214870357,2.07258205038719,1.51929978088691,0.138258436151731,0,0,0,0.327609848846413,2.70350199629091,7.18461219419332,0,0.320075189082423,0,1.70254786070051,1.84105950251841,7.69337292456945,6.8428498603627,1.27894371303652,0.754773679776773,0.157265941855896,5.78811082417674,0,0,0,0,1.59002175326709,0.788617450012533,2.40171224485641,2.1160556621441,0.6124909547064,0.128458450192919,0,0,0.41023272848151,1.26035848110859,0.207471757392654,0,0,4.90738592505128,3.89300087047543,6.42000094825876,6.12286030596793,1.52552838186867,0,0.994581110581374,1.27857558193737,5.44603685499504,5.47059807863165,1.57144016688853,1.31017534008077,5.47067519003067,0.405225507710368,0,0.206686796501184,0.380494861163441,1.09394961803644,1.64477330057155,1.98484471355718,3.51742488719241,4.47168496738583,0,0,0,0.227662191351298,3.10458295569236,0.115233987555779,0.342976018874837,0.271878931907327,0.394636641377094,3.07303986298317,3.33694205676207,4.55259938532981,0,1.68163297988273,1.82631744101899,2.80705868584208,1.9110067515482,0.643288897589907,2.3702041759909,0,0.347716544605159,0.801711364730253,4.76597177574985,8.8773608088854,8.98637560358319,3.44181887056222,2.12997601315018,1.44862788090568,0.846774100381858,1.14553434272025,3.41227024230752,3.82215575590973,5.59277158988962,5.79086378329934,2.56027642462766,0,0,0,2.91426595835484,1.16969731731053,1.59160620129095,2.73516208788408,3.9531128713636,1.09940516745429,4.22695961986686,7.87176412701035,3.27839340755936,2.35158648180761,0.980593287015622,1.64973582971138,0,0,0.8453114551668,1.86919826156599,0.845855261818682,0.580120991762195,2.39858774219829,2.85686301769052,3.17605384544123,12.9188600369561,4.3820183294791,1.83491713361816,0.143339583151451,1.41994405973866,0.679914901909147,0.872701380680755,2.645134202577,1.11598505450025,1.38652688589425,1.73050624849516,0.504665699340316,0.109265571963696,1.39368351112581,0.101988829741982,1.60330443159336,0.0918948995348449,0.250707539292375,1.13668047327359,0.267964130156178,0,0.103432995861895,3.62497769231668,1.42838658878244,0.193766729508018,0.124149428591716,2.13050538903166,2.22765053973577,2.62752345645685,5.660635445321,3.08009970976753,3.30025059771479,4.37505452895326,1.99596213927608,4.88419611665847,0.213454691755431,5.7921684686082,0.808426818959282,2.34640942403454,0.244482888365733,2.03448089157869,3.32878387092756,0.201273793591026,2.8851164307291 | |||
|short_description=p6@SDC1 | |||
}} |
Latest revision as of 15:39, 19 September 2015
Short description: | p6@SDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SDC1_5end |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | 0bp_to_ENST00000381150, NM_001006946, uc002rdp.1_5end |
EntrezGene: | SDC1 |
HGNC: | 10658 |
UniProt: | P18827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.20e-28 | 253 |
endo-epithelial cell | 7.26e-19 | 42 |
endodermal cell | 5.49e-17 | 58 |
embryonic cell | 4.96e-11 | 250 |
respiratory epithelial cell | 1.10e-09 | 13 |
epithelial cell of alimentary canal | 4.08e-08 | 20 |
epithelial cell of lung | 8.86e-08 | 19 |
epithelial cell of tracheobronchial tree | 3.44e-07 | 9 |
epithelial cell of lower respiratory tract | 3.44e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.88e-14 | 106 |
cell type cancer | 6.27e-13 | 143 |
squamous cell carcinoma | 7.99e-09 | 14 |