FFCP PHASE1:Mm9::chr14:70553492..70553540,-: Difference between revisions
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{{FFCP|EntrezGene=219158|HGNC=|MCL_coexpression_id=108|UniProt=Q8VDP4|association_with_transcript=57bp_to_NM_146055,uc007unf.1_5end|description=CAGE_peak_1_at_2610301G19Rik_5end|id=chr14:70553492..70553540,-|ontology_enrichment_celltype=CL:0000221!6.33e-14!44;CL:0000133!6.33e-14!44;CL:0002319!7.86e-14!43;CL:0000540!5.87e-12!33;CL:0000047!5.87e-12!33;CL:0000031!5.87e-12!33;CL:0000404!5.87e-12!33;CL:0000117!8.38e-11!23;CL:0000337!8.38e-11!23;CL:0000055!4.92e-09!50;CL:0000393!9.88e-08!39;CL:0000211!9.88e-08!39|ontology_enrichment_celltype_v019_2=CL:0000221,6.33e-14,44;CL:0000133,6.33e-14,44;CL:0002319,7.86e-14,43;CL:0000540,5.87e-12,33;CL:0000047,5.87e-12,33;CL:0000031,5.87e-12,33;CL:0000404,5.87e-12,33;CL:0000117,8.38e-11,23;CL:0000337,8.38e-11,23;CL:0000393,9.88e-08,39;CL:0000211,9.88e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.29e-27!73;UBERON:0005743!2.29e-27!73;UBERON:0000073!1.02e-25!75;UBERON:0001016!1.02e-25!75;UBERON:0004121!8.48e-23!102;UBERON:0000924!8.48e-23!102;UBERON:0006601!8.48e-23!102;UBERON:0002346!4.58e-22!71;UBERON:0003075!4.58e-22!71;UBERON:0007284!4.58e-22!71;UBERON:0000033!1.18e-20!63;UBERON:0001049!1.99e-20!52;UBERON:0005068!1.99e-20!52;UBERON:0006241!1.99e-20!52;UBERON:0007135!1.99e-20!52;UBERON:0000955!3.82e-20!50;UBERON:0006238!3.82e-20!50;UBERON:0002616!9.14e-20!49;UBERON:0003056!5.42e-19!49;UBERON:0000153!3.78e-17!94;UBERON:0003080!4.84e-17!40;UBERON:0002780!9.14e-17!39;UBERON:0001890!9.14e-17!39;UBERON:0006240!9.14e-17!39;UBERON:0007811!5.43e-16!86;UBERON:0002020!3.46e-13!34;UBERON:0002791!4.09e-12!29;UBERON:0003528!4.09e-12!29;UBERON:0001893!4.09e-12!29;UBERON:0000956!3.06e-09!21;UBERON:0001869!3.06e-09!21;UBERON:0000203!3.06e-09!21;UBERON:0002619!4.04e-07!17;UBERON:0000479!4.14e-07!349|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.29e-27,73;UBERON:0001016,1.02e-25,75;UBERON:0004121,4.69e-23,95;UBERON:0000924,4.69e-23,95;UBERON:0006601,4.69e-23,95;UBERON:0002346,6.35e-23,64;UBERON:0003075,6.35e-23,64;UBERON:0007284,6.35e-23,64;UBERON:0000073,5.19e-21,54;UBERON:0001049,1.99e-20,52;UBERON:0005068,1.99e-20,52;UBERON:0006241,1.99e-20,52;UBERON:0007135,1.99e-20,52;UBERON:0010371,1.50e-19,73;UBERON:0000955,1.97e-19,47;UBERON:0006238,1.97e-19,47;UBERON:0002616,4.65e-19,46;UBERON:0003056,5.42e-19,49;UBERON:0003080,4.84e-17,40;UBERON:0002780,9.14e-17,39;UBERON:0001890,9.14e-17,39;UBERON:0006240,9.14e-17,39;UBERON:0010314,2.77e-13,92;UBERON:0002020,3.46e-13,34;UBERON:0003528,4.09e-12,29;UBERON:0002791,4.09e-12,29;UBERON:0001893,4.09e-12,29;UBERON:0000956,3.06e-09,21;UBERON:0001869,3.06e-09,21;UBERON:0000203,3.06e-09,21;UBERON:0011216,1.03e-07,194;UBERON:0002619,4.04e-07,17;UBERON:0000479,4.14e-07,349|phase1_expression=29.7876855614917,22.6834014965585,18.654968814971,13.3084252975005,22.0394121176393,25.5176493306072,21.0251376535973,19.7558684865612,4.22366166455,4.91535505276186,13.0125655851384,11.3276465773378,19.3456824822262,21.4179985926544,20.6528052325711,10.5287139042709,9.09430441566591,19.874116417569,19.0589062711977,19.9463136345074,26.4484632369827,23.333373532208,14.1047886135025,20.4790301175561,23.3997466688513,20.6723507081407,15.0766698655676,23.270893130076,21.852693237483,28.983464922392,21.9513205548752,30.4814723260623,31.3683041668131,47.5445043046316,19.6419101430867,24.7689621584154,18.783580776138,14.2300754450549,12.5013655123808,13.6116173433188,11.7646297606203,8.87959130445979,7.76816564849846,18.1291417884831,19.1602400004883,24.4117180375036,41.4667412504461,58.8667922227206,41.9600609022841,39.080409713931,35.136591827966,44.5632949531412,12.2481302422148,16.6833292662609,11.4271891708438,12.6057123657614,16.3324060765091,12.3761302146586,85.9844958653291,64.536899471188,65.2846345611365,25.4133399051849,24.0109594950008,26.996991518442,24.7216590641744,25.5772841380596,40.745615030503,49.5641613864805,72.5827286159344,73.308224514108,73.6137364729837,37.7059299413021,30.7007271922743,74.8418783203369,73.9927036260785,75.3759405020217,38.540558349786,33.9648319306599,33.0254046500923,89.9464482319922,78.0389599928554,100.015367146898,32.3852278841602,30.3891809417107,38.657956687533,30.6413728892614,34.1692033917847,60.3934204473974,15.4481434399695,21.7646093107542,23.1891590961342,15.487629785665,11.5595126730318,18.3499085156858,16.2444104361917,16.1289679355041,15.308441794361,22.4968025803036,24.9394564418754,22.9670723431721,31.2672391904231,20.5322363862909,25.4805239706646,0,16.2368280758411,15.9616715249312,13.6491600153991,17.127581957859,17.8667139716548,26.7195850316685,36.0849479673563,22.5304453950985,29.0575526542634,20.9504470368145,30.8082412695547,30.0343153277924,20.0227923864843,13.4477401935518,25.6537060065464,22.3238252927425,17.6673214768315,12.1218813283806,22.3670113461747,36.3048188294318,53.408910237431,24.0129631896076,18.6911594229236,14.3976655438418,13.723584523891,37.148078572396,28.8225379775735,68.9842393099626,37.719877481724,35.8001640262463,3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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=219158 | |||
|HGNC= | |||
|MCL_coexpression_id=108 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VDP4 | |||
|association_with_transcript=57bp_to_NM_146055,uc007unf.1_5end | |||
|cluster_id=chr14:70553492..70553540,- | |||
|description=CAGE_peak_1_at_2610301G19Rik_5end | |||
|id=chr14:70553492..70553540,- | |||
|ontology_enrichment_celltype=CL:0000221!6.33e-14!44;CL:0000133!6.33e-14!44;CL:0002319!7.86e-14!43;CL:0000540!5.87e-12!33;CL:0000047!5.87e-12!33;CL:0000031!5.87e-12!33;CL:0000404!5.87e-12!33;CL:0000117!8.38e-11!23;CL:0000337!8.38e-11!23;CL:0000055!4.92e-09!50;CL:0000393!9.88e-08!39;CL:0000211!9.88e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.33e-14,44;CL:0000133,6.33e-14,44;CL:0002319,7.86e-14,43;CL:0000540,5.87e-12,33;CL:0000047,5.87e-12,33;CL:0000031,5.87e-12,33;CL:0000404,5.87e-12,33;CL:0000117,8.38e-11,23;CL:0000337,8.38e-11,23;CL:0000393,9.88e-08,39;CL:0000211,9.88e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.29e-27!73;UBERON:0005743!2.29e-27!73;UBERON:0000073!1.02e-25!75;UBERON:0001016!1.02e-25!75;UBERON:0004121!8.48e-23!102;UBERON:0000924!8.48e-23!102;UBERON:0006601!8.48e-23!102;UBERON:0002346!4.58e-22!71;UBERON:0003075!4.58e-22!71;UBERON:0007284!4.58e-22!71;UBERON:0000033!1.18e-20!63;UBERON:0001049!1.99e-20!52;UBERON:0005068!1.99e-20!52;UBERON:0006241!1.99e-20!52;UBERON:0007135!1.99e-20!52;UBERON:0000955!3.82e-20!50;UBERON:0006238!3.82e-20!50;UBERON:0002616!9.14e-20!49;UBERON:0003056!5.42e-19!49;UBERON:0000153!3.78e-17!94;UBERON:0003080!4.84e-17!40;UBERON:0002780!9.14e-17!39;UBERON:0001890!9.14e-17!39;UBERON:0006240!9.14e-17!39;UBERON:0007811!5.43e-16!86;UBERON:0002020!3.46e-13!34;UBERON:0002791!4.09e-12!29;UBERON:0003528!4.09e-12!29;UBERON:0001893!4.09e-12!29;UBERON:0000956!3.06e-09!21;UBERON:0001869!3.06e-09!21;UBERON:0000203!3.06e-09!21;UBERON:0002619!4.04e-07!17;UBERON:0000479!4.14e-07!349 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.29e-27,73;UBERON:0001016,1.02e-25,75;UBERON:0004121,4.69e-23,95;UBERON:0000924,4.69e-23,95;UBERON:0006601,4.69e-23,95;UBERON:0002346,6.35e-23,64;UBERON:0003075,6.35e-23,64;UBERON:0007284,6.35e-23,64;UBERON:0000073,5.19e-21,54;UBERON:0001049,1.99e-20,52;UBERON:0005068,1.99e-20,52;UBERON:0006241,1.99e-20,52;UBERON:0007135,1.99e-20,52;UBERON:0010371,1.50e-19,73;UBERON:0000955,1.97e-19,47;UBERON:0006238,1.97e-19,47;UBERON:0002616,4.65e-19,46;UBERON:0003056,5.42e-19,49;UBERON:0003080,4.84e-17,40;UBERON:0002780,9.14e-17,39;UBERON:0001890,9.14e-17,39;UBERON:0006240,9.14e-17,39;UBERON:0010314,2.77e-13,92;UBERON:0002020,3.46e-13,34;UBERON:0003528,4.09e-12,29;UBERON:0002791,4.09e-12,29;UBERON:0001893,4.09e-12,29;UBERON:0000956,3.06e-09,21;UBERON:0001869,3.06e-09,21;UBERON:0000203,3.06e-09,21;UBERON:0011216,1.03e-07,194;UBERON:0002619,4.04e-07,17;UBERON:0000479,4.14e-07,349 | |||
|phase1_expression=29.7876855614917,22.6834014965585,18.654968814971,13.3084252975005,22.0394121176393,25.5176493306072,21.0251376535973,19.7558684865612,4.22366166455,4.91535505276186,13.0125655851384,11.3276465773378,19.3456824822262,21.4179985926544,20.6528052325711,10.5287139042709,9.09430441566591,19.874116417569,19.0589062711977,19.9463136345074,26.4484632369827,23.333373532208,14.1047886135025,20.4790301175561,23.3997466688513,20.6723507081407,15.0766698655676,23.270893130076,21.852693237483,28.983464922392,21.9513205548752,30.4814723260623,31.3683041668131,47.5445043046316,19.6419101430867,24.7689621584154,18.783580776138,14.2300754450549,12.5013655123808,13.6116173433188,11.7646297606203,8.87959130445979,7.76816564849846,18.1291417884831,19.1602400004883,24.4117180375036,41.4667412504461,58.8667922227206,41.9600609022841,39.080409713931,35.136591827966,44.5632949531412,12.2481302422148,16.6833292662609,11.4271891708438,12.6057123657614,16.3324060765091,12.3761302146586,85.9844958653291,64.536899471188,65.2846345611365,25.4133399051849,24.0109594950008,26.996991518442,24.7216590641744,25.5772841380596,40.745615030503,49.5641613864805,72.5827286159344,73.308224514108,73.6137364729837,37.7059299413021,30.7007271922743,74.8418783203369,73.9927036260785,75.3759405020217,38.540558349786,33.9648319306599,33.0254046500923,89.9464482319922,78.0389599928554,100.015367146898,32.3852278841602,30.3891809417107,38.657956687533,30.6413728892614,34.1692033917847,60.3934204473974,15.4481434399695,21.7646093107542,23.1891590961342,15.487629785665,11.5595126730318,18.3499085156858,16.2444104361917,16.1289679355041,15.308441794361,22.4968025803036,24.9394564418754,22.9670723431721,31.2672391904231,20.5322363862909,25.4805239706646,0,16.2368280758411,15.9616715249312,13.6491600153991,17.127581957859,17.8667139716548,26.7195850316685,36.0849479673563,22.5304453950985,29.0575526542634,20.9504470368145,30.8082412695547,30.0343153277924,20.0227923864843,13.4477401935518,25.6537060065464,22.3238252927425,17.6673214768315,12.1218813283806,22.3670113461747,36.3048188294318,53.408910237431,24.0129631896076,18.6911594229236,14.3976655438418,13.723584523891,37.148078572396,28.8225379775735,68.9842393099626,37.719877481724,35.8001640262463,36.1551197533635,37.477731768652,39.4118338100724,16.5461270911424,22.2396027421634,14.5204880561667,48.9252865539766,39.3132598581239,40.8741034658143,40.9917104513145,48.1018048999888,49.8362371908066,45.8201433097074,25.0942269616845,66.6105098162483,46.3309896411157,45.5713411584628,39.0168403721083,30.3071501655902,29.9496863209063,20.5782136407943,39.8068533636986,11.937624184325,16.4702660553418,17.0498099637356,32.5187462880738,24.6252362980151,22.6878197440879,26.5154103855435,22.2343581874566,19.591923336697,19.0677834695334,23.6080593231665,27.0895594291833,18.7598228901368,19.043425833175,18.6458261955468,17.6901984784652,20.1986106067767,16.5073895075257,41.0065399700048,63.3892412256392,17.8426142811251,29.0895623329899,49.269585873639,45.518387684646,37.242696322085,36.1013509075783,27.5748774367639,23.5879776379573,31.7934471234823,22.2343588877415,27.6468729680296,24.0737331169792,30.0244694163445,19.7740269903929,27.8818084338356,25.490082976559,51.7793369601913,37.93050618643,58.6080225500018,30.9550018324878,33.9416852543345,39.2059233186881,23.2710456617267,25.8317758964304,20.7238320750615,20.2371348831753,9.19003143970162,21.35617353166,23.7836384086976,17.0895205412489,13.1859078902527,16.6412240229168,17.8238096246994,13.8094145976389,25.1309601501305,23.0631587077988,15.814502718009,21.5841749647732,22.7787501373629,15.6598904327209,16.6839594575378,19.2977408545347,28.8214976659903,37.519299530556,45.1412984744412,36.8346836132158,33.5607055052558,32.9987327160377,35.9445897737881,29.2700471786698,27.9014205067958,30.7835918611797,26.6289463658003,27.3651735575282,26.5934872073479,31.2441966536065,6.03165135757089,21.2123216689297,13.769399644533,17.9358885098076,31.7890168175828,30.7094618871572,11.639381121744,16.915552122693,26.8181986503818,30.4542220551378,40.2841753760334,27.720380562496,38.0985732680894,41.6122500259584,43.7195557808886,34.4861912335348,28.0654322342032,38.8798792870387,25.4072752522801,38.6402359957944,41.861948553869,28.8697715201937,17.2568679841952,46.8566627779114,33.2555912661226,27.3477365646052,37.7986422887389,22.1353306519628,25.8428293168221,30.5368332761105,26.3808060004694,21.1744627816997,13.7044191147498,21.6584640821192,36.7674774214091,55.2787558676122,65.7142113616393,56.5849772483404,49.1232447189098,43.3436226773031,41.9600002535408,66.068893957868,15.9576761483323,17.3702298108333,27.3455213588153,19.6214641000361,26.6416304048244,23.5220407219808,25.9037986486806,24.7852758615042,25.0673519501672,32.8202784558602,15.3783792718067,37.3560231013433,23.3345104485837,19.9670564424972,17.7702496037333,21.2763701082066,13.7682528295023,13.5752908753948,16.8603968041397,16.2294005062569,53.777118908793,38.4273792869744,32.6176129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| |||
|short_description=p1@2610301G19Rik | |||
}} |
Latest revision as of 08:07, 26 September 2015
Short description: | p1@2610301G19Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_2610301G19Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | 57bp_to_NM_146055, uc007unf.1_5end |
EntrezGene: | 2610301G19Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.33e-14 | 44 |
neurectodermal cell | 6.33e-14 | 44 |
neural cell | 7.86e-14 | 43 |
neuron | 5.87e-12 | 33 |
neuronal stem cell | 5.87e-12 | 33 |
neuroblast | 5.87e-12 | 33 |
electrically signaling cell | 5.87e-12 | 33 |
CNS neuron (sensu Vertebrata) | 8.38e-11 | 23 |
neuroblast (sensu Vertebrata) | 8.38e-11 | 23 |
electrically responsive cell | 9.88e-08 | 39 |
electrically active cell | 9.88e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.29e-27 | 73 |
nervous system | 1.02e-25 | 75 |
ectoderm-derived structure | 4.69e-23 | 95 |
ectoderm | 4.69e-23 | 95 |
presumptive ectoderm | 4.69e-23 | 95 |
neurectoderm | 6.35e-23 | 64 |
neural plate | 6.35e-23 | 64 |
presumptive neural plate | 6.35e-23 | 64 |
regional part of nervous system | 5.19e-21 | 54 |
neural tube | 1.99e-20 | 52 |
neural rod | 1.99e-20 | 52 |
future spinal cord | 1.99e-20 | 52 |
neural keel | 1.99e-20 | 52 |
ecto-epithelium | 1.50e-19 | 73 |
brain | 1.97e-19 | 47 |
future brain | 1.97e-19 | 47 |
regional part of brain | 4.65e-19 | 46 |
pre-chordal neural plate | 5.42e-19 | 49 |
anterior neural tube | 4.84e-17 | 40 |
regional part of forebrain | 9.14e-17 | 39 |
forebrain | 9.14e-17 | 39 |
future forebrain | 9.14e-17 | 39 |
structure with developmental contribution from neural crest | 2.77e-13 | 92 |
gray matter | 3.46e-13 | 34 |
brain grey matter | 4.09e-12 | 29 |
regional part of telencephalon | 4.09e-12 | 29 |
telencephalon | 4.09e-12 | 29 |
cerebral cortex | 3.06e-09 | 21 |
cerebral hemisphere | 3.06e-09 | 21 |
pallium | 3.06e-09 | 21 |
organ system subdivision | 1.03e-07 | 194 |
regional part of cerebral cortex | 4.04e-07 | 17 |
tissue | 4.14e-07 | 349 |