FFCP PHASE1:Mm9::chr15:84388184..84388203,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=223732|HGNC=|MCL_coexpression_id=964|UniProt=Q505G4|association_with_transcript=49bp_to_NM_177630,uc007xcc.1_5end|description=CAGE_peak_3_at_Ldoc1l_5end|id=chr15:84388184..84388203,-|ontology_enrichment_celltype=CL:0000221!2.33e-12!44;CL:0000133!2.33e-12!44;CL:0002319!2.43e-12!43;CL:0000540!2.13e-11!33;CL:0000047!2.13e-11!33;CL:0000031!2.13e-11!33;CL:0000404!2.13e-11!33;CL:0000117!3.80e-11!23;CL:0000337!3.80e-11!23;CL:0000055!6.08e-09!50;CL:0000393!2.28e-08!39;CL:0000211!2.28e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.21e-13,23;CL:0000337,1.21e-13,23;CL:0002319,1.44e-12,43;CL:0000221,5.33e-12,44;CL:0000133,5.33e-12,44;CL:0000540,1.15e-11,33;CL:0000047,1.15e-11,33;CL:0000031,1.15e-11,33;CL:0000404,1.15e-11,33;CL:0000393,2.32e-08,39;CL:0000211,2.32e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.27e-28!73;UBERON:0005743!4.27e-28!73;UBERON:0000073!1.16e-26!75;UBERON:0001016!1.16e-26!75;UBERON:0002346!2.54e-25!71;UBERON:0003075!2.54e-25!71;UBERON:0007284!2.54e-25!71;UBERON:0004121!7.31e-25!102;UBERON:0000924!7.31e-25!102;UBERON:0006601!7.31e-25!102;UBERON:0000033!2.25e-23!63;UBERON:0001049!1.39e-21!52;UBERON:0005068!1.39e-21!52;UBERON:0006241!1.39e-21!52;UBERON:0007135!1.39e-21!52;UBERON:0000955!2.20e-21!50;UBERON:0006238!2.20e-21!50;UBERON:0003056!2.66e-21!49;UBERON:0002616!7.41e-21!49;UBERON:0003080!4.95e-18!40;UBERON:0002780!1.38e-17!39;UBERON:0001890!1.38e-17!39;UBERON:0006240!1.38e-17!39;UBERON:0002020!2.46e-13!34;UBERON:0000153!7.81e-12!94;UBERON:0002791!2.53e-11!29;UBERON:0003528!2.53e-11!29;UBERON:0001893!2.53e-11!29;UBERON:0007811!1.59e-10!86;UBERON:0000956!1.08e-08!21;UBERON:0001869!1.08e-08!21;UBERON:0000203!1.08e-08!21;UBERON:0000468!1.05e-07!333;UBERON:0001894!1.34e-07!10;UBERON:0006222!1.34e-07!10;UBERON:0002619!8.01e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.97e-31,73;UBERON:0001016,1.00e-29,75;UBERON:0002346,5.65e-29,64;UBERON:0003075,5.65e-29,64;UBERON:0007284,5.65e-29,64;UBERON:0000073,1.16e-27,54;UBERON:0004121,9.10e-27,95;UBERON:0000924,9.10e-27,95;UBERON:0006601,9.10e-27,95;UBERON:0001049,1.09e-25,52;UBERON:0005068,1.09e-25,52;UBERON:0006241,1.09e-25,52;UBERON:0007135,1.09e-25,52;UBERON:0003056,3.28e-25,49;UBERON:0010371,1.85e-23,73;UBERON:0000955,2.50e-23,47;UBERON:0006238,2.50e-23,47;UBERON:0002616,1.17e-22,46;UBERON:0003080,1.14e-21,40;UBERON:0002780,4.34e-21,39;UBERON:0001890,4.34e-21,39;UBERON:0006240,4.34e-21,39;UBERON:0010314,2.31e-17,92;UBERON:0002020,1.24e-15,34;UBERON:0003528,5.08e-13,29;UBERON:0002791,5.08e-13,29;UBERON:0001893,5.08e-13,29;UBERON:0000956,4.99e-10,21;UBERON:0001869,4.99e-10,21;UBERON:0000203,4.99e-10,21;UBERON:0001894,1.67e-09,10;UBERON:0006222,1.67e-09,10;UBERON:0000007,3.43e-08,8;UBERON:0003296,3.43e-08,8;UBERON:0010133,3.43e-08,8;UBERON:0002619,1.27e-07,17|phase1_expression=1.44133962394315,0,0,0,0,0.16787927191189,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0.782391344348039,2.39827672018491,3.73466510648602,2.72201858703997,0.279972843250725,5.75010257459886,0,0,0,0.257259436035947,0.85960031981627,0,9.3065571995415,12.6957835025288,10.775133859605,0.338844532069132,1.77858959222228,0,0,0.7104801149461,2.39680088414724,5.37905627450176,4.04389488003063,3.64516033495565,3.36519938162211,1.42825492201902,2.65042249141936,3.67472397644862,2.20444583341944,1.83843757322004,4.40463523997555,4.21368215681119,2.4577045320999,12.5291973343684,11.3444678066988,6.25096044668112,1.95428099300967,0.56276261003168,1.5279824777681,3.24091444021034,3.98640706237488,3.91438836233131,0.151452386666368,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.280888840263504,0,0,0,0.985903938436763,0,0,0,0.216491041011214,0,0,0.11418387971906,0.258937883647172,1.03909497345377,0.520455980298408,0.608930956624282,2.07553947530453,1.3565037649736,0.705532242814229,1.38233250462643,0.494389935468748,0.289198713839823,0,0.647067399789637,0.220841518460394,0,0,1.17112318804619,2.09446706813455,0,0,0,0.381210681219194,2.84602214869163,1.37250180845588,3.5183218591602,3.65031072403781,2.30143911597297,4.98691306942944,3.56930778749067,0.916554274652847,0.497627882440372,0,0.210441855886474,2.86264974517948,3.21862946206862,8.28285797104606,4.67184935290717,4.150226448231,6.40568601424249,5.80950692270319,0.776110112217047,4.95806383745537,2.83659120251729,2.99116911078713,1.97276159184817,1.66828349535359,0.348252166522167,0.61734640922383,0.995171334092466,0,0,0,0.828503090142008,0.234526059981096,0.180062061461015,0.473489471170421,0.393528463494808,0.154267112887378,0.930135779001631,0.268273401399619,1.16765342367169,0.329119699826961,0.492502392237286,0.243206428637567,0.438599962275997,0.219550115291051,0.536825675041487,2.94405927989778,4.93942139420565,0,0,1.70630600428187,0.232236671860439,1.41754207454303,0.605050573870028,0.667134131534611,0.951128130562796,0.474529061544512,0.164698954724011,0.502670417600539,0.596869416123452,0.974820435595601,0.898819408654221,0.432276099749388,0,2.0863469104839,1.48523066392647,0,0.814605311381257,0.387904974335251,0.561086559122548,1.64414996523069,1.03327103585722,0.470996183524124,0.863780147452604,0,0.166845105716094,0,0,0.202860121388503,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.369506380333209,1.70542270593436,1.14075483509418,1.01847051465113,2.11221223459652,1.34005005953453,1.19021820443007,0.195133647857799,0.315270288212382,0,0.318909537314974,0.163863314715738,0.690739927463582,0.867894351489069,0,0,0,0,2.40825884981688,1.75817529888305,0,0,0.94652465824877,1.17131623288992,1.29254038639679,1.67278158566786,0.668396022247182,1.69845918473299,1.61924280669958,0.876767573733936,0.790575555893047,3.53453448063988,1.41940085208269,2.31485284767432,0.81443479676788,1.31976098378028,0,2.42780636154981,0.906970670894253,0.188605079755898,2.36241514304618,0.614870295887855,0.775284879504663,0.363533729477506,0.712994756769443,0.316036757935816,0,0,8.17055053809091,5.221771726908,8.14959707831353,7.93047029616891,7.80297028026004,8.20496560969525,9.05019613311665,7.00269382963578,0,0,0.441056796109924,0,0.161464426695906,0.241251699712623,0.119372344003136,0.328281799490123,0.291480836629851,1.29797711407357,0.170870880797853,1.857481811669,0,0.188368457004691,0.136694227721025,0,0.339956859987711,0.139951452323658,0.276399947608848,0.954670618015114,2.37251995185852,1.62655573701479,0.86404272657441,1.67270636811575,1.09181281873089,0.539457385539283,1.07449492442937,0.26175594198403,0.518459893167171,0,10.1464728963154,0.598066184175915,0.66183396182839,0.583353565032143,0.516639293910924,1.85851738039856,0.352071715937262,0.911430693907651,1.46803082195995,3.14059357073808,5.76060012515731,0.632022241256357,0.405450430580328,0.410843828659309,0,0.179026695667481,0.39736270956253,0,0.295379054349154,0.100966449948148,0.304827226619999,0,0.194915761479505,0.0962118416403295,0,0.226730383615211,0.221985953374065,0.179427713218951,0,0.965947970160952,0.187682475451182,0.73260649706906,0.214368379079066,0,5.0827665835536,4.60325236507177,6.30185064783336,3.26521046453006,2.05524755931193,3.0215755895588,0.675022500231806,1.35096360967266,0.453142408984205,2.5888015587591,2.80225838477277,3.99024873401031,2.56100408631201,1.94485373654635,2.72497111416377,1.10306105070008,1.11123363900808,1.23621034343337,1.60459604795908,1.26348605881899,1.01391719956096,1.69763707247469,1.40462261204824,0.89635213366817,1.14870937911227,0.952587382566147,1.50649623728312,1.54327376370964,0.412085900803307,0.735994600671987,1.37147700954166,0.887379030796687,1.66905332963125,1.59881058295561,0.470546902076653,1.52306294205018,1.82927972872773,2.10455769150274,1.22223702461276,1.12228454331548,1.77952527186261,1.0835493061312,0.818462086339379,0.929621047115796,1.35034627686799,4.24677982494508,0.935726433781634,1.28922632428979,0.765153328275374,0.661774257358546,0.695603506861264|short_description=p3@Ldoc1l}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=223732 | |||
|HGNC= | |||
|MCL_coexpression_id=964 | |||
|TSSclassifier=NA | |||
|UniProt=Q505G4 | |||
|association_with_transcript=49bp_to_NM_177630,uc007xcc.1_5end | |||
|cluster_id=chr15:84388184..84388203,- | |||
|description=CAGE_peak_3_at_Ldoc1l_5end | |||
|id=chr15:84388184..84388203,- | |||
|ontology_enrichment_celltype=CL:0000221!2.33e-12!44;CL:0000133!2.33e-12!44;CL:0002319!2.43e-12!43;CL:0000540!2.13e-11!33;CL:0000047!2.13e-11!33;CL:0000031!2.13e-11!33;CL:0000404!2.13e-11!33;CL:0000117!3.80e-11!23;CL:0000337!3.80e-11!23;CL:0000055!6.08e-09!50;CL:0000393!2.28e-08!39;CL:0000211!2.28e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.21e-13,23;CL:0000337,1.21e-13,23;CL:0002319,1.44e-12,43;CL:0000221,5.33e-12,44;CL:0000133,5.33e-12,44;CL:0000540,1.15e-11,33;CL:0000047,1.15e-11,33;CL:0000031,1.15e-11,33;CL:0000404,1.15e-11,33;CL:0000393,2.32e-08,39;CL:0000211,2.32e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.27e-28!73;UBERON:0005743!4.27e-28!73;UBERON:0000073!1.16e-26!75;UBERON:0001016!1.16e-26!75;UBERON:0002346!2.54e-25!71;UBERON:0003075!2.54e-25!71;UBERON:0007284!2.54e-25!71;UBERON:0004121!7.31e-25!102;UBERON:0000924!7.31e-25!102;UBERON:0006601!7.31e-25!102;UBERON:0000033!2.25e-23!63;UBERON:0001049!1.39e-21!52;UBERON:0005068!1.39e-21!52;UBERON:0006241!1.39e-21!52;UBERON:0007135!1.39e-21!52;UBERON:0000955!2.20e-21!50;UBERON:0006238!2.20e-21!50;UBERON:0003056!2.66e-21!49;UBERON:0002616!7.41e-21!49;UBERON:0003080!4.95e-18!40;UBERON:0002780!1.38e-17!39;UBERON:0001890!1.38e-17!39;UBERON:0006240!1.38e-17!39;UBERON:0002020!2.46e-13!34;UBERON:0000153!7.81e-12!94;UBERON:0002791!2.53e-11!29;UBERON:0003528!2.53e-11!29;UBERON:0001893!2.53e-11!29;UBERON:0007811!1.59e-10!86;UBERON:0000956!1.08e-08!21;UBERON:0001869!1.08e-08!21;UBERON:0000203!1.08e-08!21;UBERON:0000468!1.05e-07!333;UBERON:0001894!1.34e-07!10;UBERON:0006222!1.34e-07!10;UBERON:0002619!8.01e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.97e-31,73;UBERON:0001016,1.00e-29,75;UBERON:0002346,5.65e-29,64;UBERON:0003075,5.65e-29,64;UBERON:0007284,5.65e-29,64;UBERON:0000073,1.16e-27,54;UBERON:0004121,9.10e-27,95;UBERON:0000924,9.10e-27,95;UBERON:0006601,9.10e-27,95;UBERON:0001049,1.09e-25,52;UBERON:0005068,1.09e-25,52;UBERON:0006241,1.09e-25,52;UBERON:0007135,1.09e-25,52;UBERON:0003056,3.28e-25,49;UBERON:0010371,1.85e-23,73;UBERON:0000955,2.50e-23,47;UBERON:0006238,2.50e-23,47;UBERON:0002616,1.17e-22,46;UBERON:0003080,1.14e-21,40;UBERON:0002780,4.34e-21,39;UBERON:0001890,4.34e-21,39;UBERON:0006240,4.34e-21,39;UBERON:0010314,2.31e-17,92;UBERON:0002020,1.24e-15,34;UBERON:0003528,5.08e-13,29;UBERON:0002791,5.08e-13,29;UBERON:0001893,5.08e-13,29;UBERON:0000956,4.99e-10,21;UBERON:0001869,4.99e-10,21;UBERON:0000203,4.99e-10,21;UBERON:0001894,1.67e-09,10;UBERON:0006222,1.67e-09,10;UBERON:0000007,3.43e-08,8;UBERON:0003296,3.43e-08,8;UBERON:0010133,3.43e-08,8;UBERON:0002619,1.27e-07,17 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0.16787927191189,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0.782391344348039,2.39827672018491,3.73466510648602,2.72201858703997,0.279972843250725,5.75010257459886,0,0,0,0.257259436035947,0.85960031981627,0,9.3065571995415,12.6957835025288,10.775133859605,0.338844532069132,1.77858959222228,0,0,0.7104801149461,2.39680088414724,5.37905627450176,4.04389488003063,3.64516033495565,3.36519938162211,1.42825492201902,2.65042249141936,3.67472397644862,2.20444583341944,1.83843757322004,4.40463523997555,4.21368215681119,2.4577045320999,12.5291973343684,11.3444678066988,6.25096044668112,1.95428099300967,0.56276261003168,1.5279824777681,3.24091444021034,3.98640706237488,3.91438836233131,0.151452386666368,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.280888840263504,0,0,0,0.985903938436763,0,0,0,0.216491041011214,0,0,0.11418387971906,0.258937883647172,1.03909497345377,0.520455980298408,0.608930956624282,2.07553947530453,1.3565037649736,0.705532242814229,1.38233250462643,0.494389935468748,0.289198713839823,0,0.647067399789637,0.220841518460394,0,0,1.17112318804619,2.09446706813455,0,0,0,0.381210681219194,2.84602214869163,1.37250180845588,3.5183218591602,3.65031072403781,2.30143911597297,4.98691306942944,3.56930778749067,0.916554274652847,0.497627882440372,0,0.210441855886474,2.86264974517948,3.21862946206862,8.28285797104606,4.67184935290717,4.150226448231,6.40568601424249,5.80950692270319,0.776110112217047,4.95806383745537,2.83659120251729,2.99116911078713,1.97276159184817,1.66828349535359,0.348252166522167,0.61734640922383,0.995171334092466,0,0,0,0.828503090142008,0.234526059981096,0.180062061461015,0.473489471170421,0.393528463494808,0.154267112887378,0.930135779001631,0.268273401399619,1.16765342367169,0.329119699826961,0.492502392237286,0.243206428637567,0.438599962275997,0.219550115291051,0.536825675041487,2.94405927989778,4.93942139420565,0,0,1.70630600428187,0.232236671860439,1.41754207454303,0.605050573870028,0.667134131534611,0.951128130562796,0.474529061544512,0.164698954724011,0.502670417600539,0.596869416123452,0.974820435595601,0.898819408654221,0.432276099749388,0,2.0863469104839,1.48523066392647,0,0.814605311381257,0.387904974335251,0.561086559122548,1.64414996523069,1.03327103585722,0.470996183524124,0.863780147452604,0,0.166845105716094,0,0,0.202860121388503,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.369506380333209,1.70542270593436,1.14075483509418,1.01847051465113,2.11221223459652,1.34005005953453,1.19021820443007,0.195133647857799,0.315270288212382,0,0.318909537314974,0.163863314715738,0.690739927463582,0.867894351489069,0,0,0,0,2.40825884981688,1.75817529888305,0,0,0.94652465824877,1.17131623288992,1.29254038639679,1.67278158566786,0.668396022247182,1.69845918473299,1.61924280669958,0.876767573733936,0.790575555893047,3.53453448063988,1.41940085208269,2.31485284767432,0.81443479676788,1.31976098378028,0,2.42780636154981,0.906970670894253,0.188605079755898,2.36241514304618,0.614870295887855,0.775284879504663,0.363533729477506,0.712994756769443,0.316036757935816,0,0,8.17055053809091,5.221771726908,8.14959707831353,7.93047029616891,7.80297028026004,8.20496560969525,9.05019613311665,7.00269382963578,0,0,0.441056796109924,0,0.161464426695906,0.241251699712623,0.119372344003136,0.328281799490123,0.291480836629851,1.29797711407357,0.170870880797853,1.857481811669,0,0.188368457004691,0.136694227721025,0,0.339956859987711,0.139951452323658,0.276399947608848,0.954670618015114,2.37251995185852,1.62655573701479,0.86404272657441,1.67270636811575,1.09181281873089,0.539457385539283,1.07449492442937,0.26175594198403,0.518459893167171,0,10.1464728963154,0.598066184175915,0.66183396182839,0.583353565032143,0.516639293910924,1.85851738039856,0.352071715937262,0.911430693907651,1.46803082195995,3.14059357073808,5.76060012515731,0.632022241256357,0.405450430580328,0.410843828659309,0,0.179026695667481,0.39736270956253,0,0.295379054349154,0.100966449948148,0.304827226619999,0,0.194915761479505,0.0962118416403295,0,0.226730383615211,0.221985953374065,0.179427713218951,0,0.965947970160952,0.187682475451182,0.73260649706906,0.214368379079066,0,5.0827665835536,4.60325236507177,6.30185064783336,3.26521046453006,2.05524755931193,3.0215755895588,0.675022500231806,1.35096360967266,0.453142408984205,2.5888015587591,2.80225838477277,3.99024873401031,2.56100408631201,1.94485373654635,2.72497111416377,1.10306105070008,1.11123363900808,1.23621034343337,1.60459604795908,1.26348605881899,1.01391719956096,1.69763707247469,1.40462261204824,0.89635213366817,1.14870937911227,0.952587382566147,1.50649623728312,1.54327376370964,0.412085900803307,0.735994600671987,1.37147700954166,0.887379030796687,1.66905332963125,1.59881058295561,0.470546902076653,1.52306294205018,1.82927972872773,2.10455769150274,1.22223702461276,1.12228454331548,1.77952527186261,1.0835493061312,0.818462086339379,0.929621047115796,1.35034627686799,4.24677982494508,0.935726433781634,1.28922632428979,0.765153328275374,0.661774257358546,0.695603506861264 | |||
|short_description=p3@Ldoc1l | |||
}} |
Latest revision as of 06:00, 27 September 2015
Short description: | p3@Ldoc1l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ldoc1l_5end |
Coexpression cluster: | MCL_coexpression_mm9:964 |
Association with transcript: | 49bp_to_NM_177630, uc007xcc.1_5end |
EntrezGene: | Ldoc1l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.21e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.21e-13 | 23 |
neural cell | 1.44e-12 | 43 |
ectodermal cell | 5.33e-12 | 44 |
neurectodermal cell | 5.33e-12 | 44 |
neuron | 1.15e-11 | 33 |
neuronal stem cell | 1.15e-11 | 33 |
neuroblast | 1.15e-11 | 33 |
electrically signaling cell | 1.15e-11 | 33 |
electrically responsive cell | 2.32e-08 | 39 |
electrically active cell | 2.32e-08 | 39 |