FFCP PHASE1:Hg19::chr5:151066486..151066501,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6678 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11219 | |||
|TSSclassifier=strong | |||
|UniProt=P09486 | |||
|association_with_transcript=15bp_to_NM_003118,uc003lui.2_5end | |||
|cluster_id=chr5:151066486..151066501,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_2_at_SPARC_5end | |||
|id=chr5:151066486..151066501,- | |||
|ontology_enrichment_celltype=CL:0000055!1.43e-34!180;CL:0000057!2.69e-19!75;CL:0000222!5.10e-17!119;CL:0000183!4.54e-14!59;CL:0000680!6.35e-14!57;CL:0000056!6.35e-14!57;CL:0000355!6.35e-14!57;CL:0000187!2.94e-13!54;CL:0000192!1.27e-11!42;CL:0000514!1.27e-11!42;CL:0000393!2.14e-11!60;CL:0000211!2.14e-11!60;CL:0000136!1.02e-09!15;CL:0000359!3.69e-09!32;CL:0000220!9.71e-08!246;CL:0002321!1.43e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000134;4.71e-10;55!CL:0000048;4.28e-09;58!CL:0000723;5.67e-09;61!CL:0000136;7.08e-09;13!CL:0000192;1.09e-08;43!CL:0000359;1.16e-08;32!CL:0000349;1.86e-08;19!CL:0000057;4.58e-08;73!CL:0000187;8.80e-08;55!CL:0002320;1.82e-07;188!CL:0002334;9.64e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.77e-20,76;CL:0000222,3.24e-17,121;CL:0000680,3.00e-14,58;CL:0000056,3.00e-14,58;CL:0000355,3.00e-14,58;CL:0000187,1.40e-13,55;CL:0000192,6.21e-12,43;CL:0000514,6.21e-12,43;CL:0000393,1.06e-11,61;CL:0000211,1.06e-11,61;CL:0000136,9.48e-10,15;CL:0000359,3.45e-09,32;CL:0000349,1.86e-08,19;CL:0002321,1.19e-07,250;CL:0002334,9.62e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;1.09e-08;43!CL:0000355;7.32e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!8.16e-16!83;UBERON:0002329!8.16e-16!83;UBERON:0003077!8.16e-16!83;UBERON:0003059!8.16e-16!83;UBERON:0007282!8.16e-16!83;UBERON:0009618!8.16e-16!83;UBERON:0007285!8.16e-16!83;UBERON:0000475!8.70e-16!365;UBERON:0004872!4.09e-15!84;UBERON:0001134!2.29e-14!61;UBERON:0002036!2.29e-14!61;UBERON:0003082!2.29e-14!61;UBERON:0004290!3.55e-14!70;UBERON:0002385!6.36e-14!63;UBERON:0001015!6.36e-14!63;UBERON:0000383!6.36e-14!63;UBERON:0002049!1.51e-13!79;UBERON:0007798!1.51e-13!79;UBERON:0004535!2.30e-13!110;UBERON:0001009!4.35e-13!113;UBERON:0005256!2.10e-11!143;UBERON:0000486!2.20e-11!82;UBERON:0000468!4.06e-11!659;UBERON:0000055!6.50e-11!69;UBERON:0001981!2.61e-10!60;UBERON:0007500!2.61e-10!60;UBERON:0004537!2.61e-10!60;UBERON:0006965!2.61e-10!60;UBERON:0001637!2.12e-09!42;UBERON:0003509!2.12e-09!42;UBERON:0004572!2.12e-09!42;UBERON:0000119!2.57e-09!312;UBERON:0003914!2.76e-09!118;UBERON:0000483!5.57e-09!309;UBERON:0000490!2.07e-08!138;UBERON:0004573!6.06e-08!33;UBERON:0004571!6.06e-08!33;UBERON:0002100!6.26e-08!216;UBERON:0000467!7.24e-08!625;UBERON:0000480!9.34e-08!626;UBERON:0004111!1.38e-07!241;UBERON:0000477!2.64e-07!286;UBERON:0000478!4.96e-07!24;UBERON:0001013!5.13e-07!14;UBERON:0000481!6.44e-07!347;UBERON:0000025!9.98e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.50e-08;198!UBERON:0004573;2.79e-07;33!UBERON:0004571;2.79e-07;33!UBERON:0001637;4.00e-07;42!UBERON:0003509;4.00e-07;42!UBERON:0004572;4.00e-07;42!UBERON:0000478;4.62e-07;24!UBERON:0001013;4.90e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,9.73e-15,73;UBERON:0001134,1.08e-14,62;UBERON:0002036,1.08e-14,62;UBERON:0003082,1.08e-14,62;UBERON:0004872,1.23e-14,83;UBERON:0007503,1.59e-14,78;UBERON:0002329,1.68e-14,71;UBERON:0003059,1.68e-14,71;UBERON:0007282,1.68e-14,71;UBERON:0004290,1.68e-14,71;UBERON:0009618,1.68e-14,71;UBERON:0003077,2.94e-14,72;UBERON:0007285,2.94e-14,72;UBERON:0002385,3.02e-14,64;UBERON:0001015,3.02e-14,64;UBERON:0000383,3.02e-14,64;UBERON:0002049,4.44e-13,78;UBERON:0007798,4.44e-13,78;UBERON:0004535,6.05e-13,109;UBERON:0001009,1.13e-12,112;UBERON:0000486,1.40e-11,83;UBERON:0003104,3.23e-11,160;UBERON:0009142,3.23e-11,160;UBERON:0005256,6.77e-11,122;UBERON:0000055,1.84e-10,68;UBERON:0007500,7.60e-10,59;UBERON:0001981,7.60e-10,59;UBERON:0004537,7.60e-10,59;UBERON:0006965,7.60e-10,59;UBERON:0000119,1.29e-09,309;UBERON:0001637,1.98e-09,42;UBERON:0003509,1.98e-09,42;UBERON:0004572,1.98e-09,42;UBERON:0000483,2.84e-09,306;UBERON:0003914,3.79e-09,117;UBERON:0000490,4.67e-09,148;UBERON:0010314,2.86e-08,132;UBERON:0004573,5.73e-08,33;UBERON:0004571,5.73e-08,33;UBERON:0004111,7.08e-08,240;UBERON:0000926,3.29e-07,315;UBERON:0004120,3.29e-07,315;UBERON:0006603,3.29e-07,315;UBERON:0000478,4.73e-07,24;UBERON:0001013,4.89e-07,14;UBERON:0000025,9.90e-07,192 | |||
|phase1_expression=4128.09613378559,2935.74638359316,7439.71440258945,2118.55172613577,4277.41767366914,3320.9927612501,3543.66529557466,840.819151531112,1396.55955398454,168.573480440035,19.538432703228,953.496589348202,1231.00048739219,572.171849734296,434.461959579298,583.578227120141,556.889743894155,591.551173213772,454.265435673962,589.13426289743,470.017592626759,1046.62531501534,339.189644750302,208.049126110784,263.011829951112,0.764134057479513,1.23150884174919,0.550975469195755,9.8341069212226,8.44424675813868,37.3106857191743,22.9855306119732,30.120591877825,18.8574545185062,0,0.142169232487422,27.0112404188059,24.9297933839345,0.401088894940283,1.30206522429511,84.1922183142116,108.828271782377,83.9696350487448,1.01778767145695,0.755751887377619,0.242584061187816,1.85943229524548,3.28934310417461,1.23882548358041,2.3015391385772,1.7931249457037,1.18241114944293,0.689491361473237,1.29096936716765,0,1.12945403725563,1.36453075028923,0.224723484445085,2.14258724659632,1.60464513538047,1.91801137739712,1.31940520074686,0.598390972864896,1.27867425159808,0.870627715885752,1.13477044938228,0,2.26123798731069,1.0429658368404,1.08594422352558,13.3187890579341,2.94622108790052,1.58231193720442,0,0.425208599930087,0,1.57260083605093,1.65194582125657,2.08943262706204,0,0,0,0,1.09227722252426,0,0,0.400395987036012,5.74752439954483,1.32208974556972,0.954053754535364,0,0,0,18.5039860010636,10.0891541336676,16.5931973408299,0,0.393010762749165,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.127986611154418,0,0.947109008176067,0.821127996921047,0.403213486449465,0,0.144824403882799,1657.88669093494,680.761372599191,1740.72091693782,894.561902151802,1633.86025076236,1368.79960417978,2241.91108473705,3986.02622264889,258.552724943726,402.217126997091,335.792385704821,320.243839591907,104.917043028252,88.2466973826942,24.3410545241012,22.6368658489047,64.8834847332062,0.238490624305342,0,0.371457501329565,279.062419942854,262.371551507368,406.848667884101,402.499254649895,401.46096045288,190.656803064467,219.026724930578,421.736150964345,541.476251809173,562.330629444646,180.870363382007,137.609251135051,226.733651462249,182.360887851551,558.997944038414,221.28472668795,168.397029469627,169.592889607883,148.717138341907,244.910540168577,238.895074085251,2.63560834872127,7.75560528296651,78.0608353335137,5577.51621387656,1549.0710491928,1314.29352875201,3648.27497930416,956.185958406771,1039.49627066384,1168.90150324027,2373.68181841833,1047.84755619101,519.579062172787,470.116433354307,1695.35454705088,1416.24042237184,323.832218794307,155.143558184669,201.376553005191,201.755718744931,118.491409131559,133.868924992445,143.821626063102,742.712875025302,254.512705469983,591.23011988773,2360.56167741944,2145.53514535004,1416.21107917557,1851.87895146045,276.239562998623,233.220921041341,472.394316900532,1275.22998865883,1719.0900466367,2002.07237298931,944.890085722975,1417.89568048476,2934.0649649783,2209.17813768727,1699.71596822205,996.517957735704,1439.95297831502,2374.85108679109,2336.70831988033,1570.87939720884,868.372183399754,1921.08138466479,1152.05144694767,2415.13025789053,1170.63862930695,819.995024413518,108.032816918283,177.830470625224,134.798159832832,56.7177733502619,51.9516691820222,107.014621382826,121.490756478014,87.8076561047187,28.4682340079147,846.391969904304,942.347974452577,551.158336196397,343.632266743665,512.534431985406,0,0,0,0.110293972732394,0,0,0,0,0,357.26724003833,1086.87374697671,2878.54863525181,3616.41430008433,2.53510069643662,8.84544495009863,122.293510683051,0,6.64137568132813,712.17798054918,88.7879808955781,16.8602629886429,51.6718918195783,121.568628493149,212.427015062332,402.454761903197,382.478056366974,276.494015865558,3537.1717312426,240.947601313232,244.919336153027,183.595256906387,0,0,86.4221691366765,339.072180186755,279.872478589675,166.846224496463,471.693815982398,155.243731480413,50.9587994179207,41.5606532074966,85.8777201330073,0,0.528290604079356,35.6604358730128,36.6064681679082,35.4741237928128,124.011387552606,271.211782146377,117.217447210047,410.573870454493,230.230756162741,241.776161564354,121.762060300626,543.723627990654,374.053739058954,568.225038540721,3598.53675154926,1634.4899575431,974.634073697068,1553.07860085564,833.099569660042,516.215200144119,275.18731612516,384.980048678264,1854.99648972081,7040.51532995397,1075.97512017246,974.276927222561,1760.96710601931,435.573530113386,1868.01981963826,3184.58325772547,1617.36305134332,91.2178354808929,37.1670247659774,50.6001454759276,3129.50061272007,3069.11092548752,225.366309964335,1192.70840432752,653.62018203277,513.72590353526,1.00876629594175,0,0.215627574859517,0.256686072559497,333.372146979872,123.632861164741,77.3288812777695,107.042893548649,71.4491401851543,7.49007023947182,11.966458368161,17.4054515643135,715.782162689462,478.663188654111,194.225756969011,2471.10977670905,1609.2510499616,1699.55892682071,1867.8198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| |||
|short_description=p2@SPARC | |||
}} |
Latest revision as of 10:32, 16 September 2015
Short description: | p2@SPARC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SPARC_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 15bp_to_NM_003118, uc003lui.2_5end |
EntrezGene: | SPARC |
HGNC: | 11219 |
UniProt: | P09486 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.77e-20 | 76 |
mesodermal cell | 3.24e-17 | 121 |
muscle precursor cell | 3.00e-14 | 58 |
myoblast | 3.00e-14 | 58 |
multi-potent skeletal muscle stem cell | 3.00e-14 | 58 |
muscle cell | 1.40e-13 | 55 |
smooth muscle cell | 6.21e-12 | 43 |
smooth muscle myoblast | 6.21e-12 | 43 |
electrically responsive cell | 1.06e-11 | 61 |
electrically active cell | 1.06e-11 | 61 |
fat cell | 9.48e-10 | 15 |
vascular associated smooth muscle cell | 3.45e-09 | 32 |
extraembryonic cell | 1.86e-08 | 19 |
embryonic cell | 1.19e-07 | 250 |
preadipocyte | 9.62e-07 | 12 |