FFCP PHASE1:Mm9::chr18:25327116..25327232,-: Difference between revisions
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{{FFCP|EntrezGene=66648|HGNC=|MCL_coexpression_id=13|UniProt=E9PUD7|association_with_transcript=0bp_to_ENSMUST00000148255_5end|description=CAGE_peak_1_at_5730494M16Rik_5end|id=chr18:25327116..25327232,-|ontology_enrichment_celltype=CL:0000540!1.03e-15!33;CL:0000047!1.03e-15!33;CL:0000031!1.03e-15!33;CL:0000404!1.03e-15!33;CL:0000117!3.16e-14!23;CL:0000337!3.16e-14!23;CL:0000221!2.19e-13!44;CL:0000133!2.19e-13!44;CL:0002319!4.94e-13!43;CL:0000393!1.83e-11!39;CL:0000211!1.83e-11!39;CL:0000055!1.23e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.03e-15,33;CL:0000047,1.03e-15,33;CL:0000031,1.03e-15,33;CL:0000404,1.03e-15,33;CL:0000117,3.16e-14,23;CL:0000337,3.16e-14,23;CL:0000221,2.19e-13,44;CL:0000133,2.19e-13,44;CL:0002319,4.94e-13,43;CL:0000393,1.83e-11,39;CL:0000211,1.83e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.91e-29!75;UBERON:0001016!5.91e-29!75;UBERON:0001017!6.91e-29!73;UBERON:0005743!6.91e-29!73;UBERON:0000033!4.88e-25!63;UBERON:0001049!2.71e-24!52;UBERON:0005068!2.71e-24!52;UBERON:0006241!2.71e-24!52;UBERON:0007135!2.71e-24!52;UBERON:0002346!7.89e-23!71;UBERON:0003075!7.89e-23!71;UBERON:0007284!7.89e-23!71;UBERON:0004121!1.33e-22!102;UBERON:0000924!1.33e-22!102;UBERON:0006601!1.33e-22!102;UBERON:0000955!2.48e-22!50;UBERON:0006238!2.48e-22!50;UBERON:0002616!8.18e-22!49;UBERON:0003056!4.65e-21!49;UBERON:0000153!4.58e-20!94;UBERON:0002020!3.82e-19!34;UBERON:0007811!4.91e-19!86;UBERON:0003080!9.14e-19!40;UBERON:0002780!3.81e-18!39;UBERON:0001890!3.81e-18!39;UBERON:0006240!3.81e-18!39;UBERON:0002791!1.02e-15!29;UBERON:0003528!1.02e-15!29;UBERON:0001893!1.02e-15!29;UBERON:0000956!4.41e-11!21;UBERON:0001869!4.41e-11!21;UBERON:0000203!4.41e-11!21;UBERON:0002619!4.14e-09!17;UBERON:0004111!8.13e-08!122;UBERON:0000025!1.80e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.91e-29,75;UBERON:0001017,6.91e-29,73;UBERON:0002346,4.14e-28,64;UBERON:0003075,4.14e-28,64;UBERON:0007284,4.14e-28,64;UBERON:0004121,1.57e-26,95;UBERON:0000924,1.57e-26,95;UBERON:0006601,1.57e-26,95;UBERON:0000073,2.05e-25,54;UBERON:0001049,2.71e-24,52;UBERON:0005068,2.71e-24,52;UBERON:0006241,2.71e-24,52;UBERON:0007135,2.71e-24,52;UBERON:0010371,3.48e-24,73;UBERON:0003056,4.64e-21,49;UBERON:0000955,1.64e-20,47;UBERON:0006238,1.64e-20,47;UBERON:0002616,5.26e-20,46;UBERON:0002020,3.81e-19,34;UBERON:0003080,9.13e-19,40;UBERON:0010314,1.64e-18,92;UBERON:0002780,3.81e-18,39;UBERON:0001890,3.81e-18,39;UBERON:0006240,3.81e-18,39;UBERON:0003528,1.02e-15,29;UBERON:0002791,1.02e-15,29;UBERON:0001893,1.02e-15,29;UBERON:0000956,4.41e-11,21;UBERON:0001869,4.41e-11,21;UBERON:0000203,4.41e-11,21;UBERON:0002619,4.14e-09,17;UBERON:0004111,7.96e-08,122;UBERON:0000025,1.76e-07,114|phase1_expression=18.7374151112609,1.04692622291808,1.36499771816861,0.30246421130683,0.500895729946347,3.02182689441402,0.934450562382103,9.29687928779349,2.39340827657833,0.936258105287974,2.91070545983358,3.66951931378547,12.3264525550468,9.87850547334671,2.33176833270964,2.63217847606774,0.699561878128147,7.25562980323947,6.7186072466812,6.79023442876848,12.5013636522073,4.36880185283895,2.87319768052829,1.75991665072747,1.83527424853736,0.57423196411502,0.430761996159075,1.50829862880122,1.90023419456374,2.01624103807945,2.88249663851896,0.635030673459631,2.46025915033828,0,4.04392267651784,4.15586613396231,3.47087905646027,1.25559489221072,3.906676722619,1.57057123192139,1.76469446409304,1.36609096991689,2.91306211818692,5.5394599909254,5.06884656097573,4.9557623083654,8.60630478782843,5.45062890951116,12.0827400503959,9.52706505463989,5.73944328663986,5.75010257459886,4.19456515144341,10.8804321301702,5.04140698713696,5.91696702882678,5.73066879877513,3.09403255366465,27.7173551377649,23.8045940672415,22.1840991227163,5.76035704517525,7.11435836888911,3.5995988691256,4.94433181283487,3.5524005747305,5.69240209984969,8.83702102239575,22.2932666463227,19.3058491814318,20.4015212510841,29.7077023779956,26.5042249141936,33.3174973864675,25.8782771749238,19.3035945188104,17.6185409599022,34.4755812830007,29.9532739849675,26.3772575460388,29.2760459527711,26.5665818983948,27.9182999001381,26.449842671489,25.5173073787273,34.7661730858928,41.8572741549363,37.839087502536,8.25415507331706,12.5448789777264,4.05810284182349,6.88339101585109,5.439770669662,4.31762553310254,11.695975514058,5.37632264516803,8.98844288843212,22.8376632254597,15.3273742715693,13.7802434059033,16.0561498545416,3.84979432242953,2.54805239706646,7.11066703153331,2.59789249213457,3.80039798212648,2.02209778005913,5.02409070763864,9.06282592765101,3.26572705942614,8.32729568477452,4.56698217468212,4.38169444786511,4.37095657602605,4.46837087115678,5.02666365318702,1.73036477414062,8.6759614151947,4.42305275974937,8.25010934731787,5.52103796150984,3.87900202508178,7.45567044872489,21.958559775866,15.7085030110091,4.34276993854605,3.83408398418945,1.79970819298022,3.55796635804581,27.2618963716777,19.6725259212009,36.816725169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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66648 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=E9PUD7 | |||
|association_with_transcript=0bp_to_ENSMUST00000148255_5end | |||
|cluster_id=chr18:25327116..25327232,- | |||
|description=CAGE_peak_1_at_5730494M16Rik_5end | |||
|id=chr18:25327116..25327232,- | |||
|ontology_enrichment_celltype=CL:0000540!1.03e-15!33;CL:0000047!1.03e-15!33;CL:0000031!1.03e-15!33;CL:0000404!1.03e-15!33;CL:0000117!3.16e-14!23;CL:0000337!3.16e-14!23;CL:0000221!2.19e-13!44;CL:0000133!2.19e-13!44;CL:0002319!4.94e-13!43;CL:0000393!1.83e-11!39;CL:0000211!1.83e-11!39;CL:0000055!1.23e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.03e-15,33;CL:0000047,1.03e-15,33;CL:0000031,1.03e-15,33;CL:0000404,1.03e-15,33;CL:0000117,3.16e-14,23;CL:0000337,3.16e-14,23;CL:0000221,2.19e-13,44;CL:0000133,2.19e-13,44;CL:0002319,4.94e-13,43;CL:0000393,1.83e-11,39;CL:0000211,1.83e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.91e-29!75;UBERON:0001016!5.91e-29!75;UBERON:0001017!6.91e-29!73;UBERON:0005743!6.91e-29!73;UBERON:0000033!4.88e-25!63;UBERON:0001049!2.71e-24!52;UBERON:0005068!2.71e-24!52;UBERON:0006241!2.71e-24!52;UBERON:0007135!2.71e-24!52;UBERON:0002346!7.89e-23!71;UBERON:0003075!7.89e-23!71;UBERON:0007284!7.89e-23!71;UBERON:0004121!1.33e-22!102;UBERON:0000924!1.33e-22!102;UBERON:0006601!1.33e-22!102;UBERON:0000955!2.48e-22!50;UBERON:0006238!2.48e-22!50;UBERON:0002616!8.18e-22!49;UBERON:0003056!4.65e-21!49;UBERON:0000153!4.58e-20!94;UBERON:0002020!3.82e-19!34;UBERON:0007811!4.91e-19!86;UBERON:0003080!9.14e-19!40;UBERON:0002780!3.81e-18!39;UBERON:0001890!3.81e-18!39;UBERON:0006240!3.81e-18!39;UBERON:0002791!1.02e-15!29;UBERON:0003528!1.02e-15!29;UBERON:0001893!1.02e-15!29;UBERON:0000956!4.41e-11!21;UBERON:0001869!4.41e-11!21;UBERON:0000203!4.41e-11!21;UBERON:0002619!4.14e-09!17;UBERON:0004111!8.13e-08!122;UBERON:0000025!1.80e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.91e-29,75;UBERON:0001017,6.91e-29,73;UBERON:0002346,4.14e-28,64;UBERON:0003075,4.14e-28,64;UBERON:0007284,4.14e-28,64;UBERON:0004121,1.57e-26,95;UBERON:0000924,1.57e-26,95;UBERON:0006601,1.57e-26,95;UBERON:0000073,2.05e-25,54;UBERON:0001049,2.71e-24,52;UBERON:0005068,2.71e-24,52;UBERON:0006241,2.71e-24,52;UBERON:0007135,2.71e-24,52;UBERON:0010371,3.48e-24,73;UBERON:0003056,4.64e-21,49;UBERON:0000955,1.64e-20,47;UBERON:0006238,1.64e-20,47;UBERON:0002616,5.26e-20,46;UBERON:0002020,3.81e-19,34;UBERON:0003080,9.13e-19,40;UBERON:0010314,1.64e-18,92;UBERON:0002780,3.81e-18,39;UBERON:0001890,3.81e-18,39;UBERON:0006240,3.81e-18,39;UBERON:0003528,1.02e-15,29;UBERON:0002791,1.02e-15,29;UBERON:0001893,1.02e-15,29;UBERON:0000956,4.41e-11,21;UBERON:0001869,4.41e-11,21;UBERON:0000203,4.41e-11,21;UBERON:0002619,4.14e-09,17;UBERON:0004111,7.96e-08,122;UBERON:0000025,1.76e-07,114 | |||
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| |||
|short_description=p1@5730494M16Rik | |||
}} |
Latest revision as of 03:01, 27 September 2015
Short description: | p1@5730494M16Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_5730494M16Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000148255_5end |
EntrezGene: | 5730494M16Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.03e-15 | 33 |
neuronal stem cell | 1.03e-15 | 33 |
neuroblast | 1.03e-15 | 33 |
electrically signaling cell | 1.03e-15 | 33 |
CNS neuron (sensu Vertebrata) | 3.16e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.16e-14 | 23 |
ectodermal cell | 2.19e-13 | 44 |
neurectodermal cell | 2.19e-13 | 44 |
neural cell | 4.94e-13 | 43 |
electrically responsive cell | 1.83e-11 | 39 |
electrically active cell | 1.83e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.91e-29 | 75 |
central nervous system | 6.91e-29 | 73 |
neurectoderm | 4.14e-28 | 64 |
neural plate | 4.14e-28 | 64 |
presumptive neural plate | 4.14e-28 | 64 |
ectoderm-derived structure | 1.57e-26 | 95 |
ectoderm | 1.57e-26 | 95 |
presumptive ectoderm | 1.57e-26 | 95 |
regional part of nervous system | 2.05e-25 | 54 |
neural tube | 2.71e-24 | 52 |
neural rod | 2.71e-24 | 52 |
future spinal cord | 2.71e-24 | 52 |
neural keel | 2.71e-24 | 52 |
ecto-epithelium | 3.48e-24 | 73 |
pre-chordal neural plate | 4.64e-21 | 49 |
brain | 1.64e-20 | 47 |
future brain | 1.64e-20 | 47 |
regional part of brain | 5.26e-20 | 46 |
gray matter | 3.81e-19 | 34 |
anterior neural tube | 9.13e-19 | 40 |
structure with developmental contribution from neural crest | 1.64e-18 | 92 |
regional part of forebrain | 3.81e-18 | 39 |
forebrain | 3.81e-18 | 39 |
future forebrain | 3.81e-18 | 39 |
brain grey matter | 1.02e-15 | 29 |
regional part of telencephalon | 1.02e-15 | 29 |
telencephalon | 1.02e-15 | 29 |
cerebral cortex | 4.41e-11 | 21 |
cerebral hemisphere | 4.41e-11 | 21 |
pallium | 4.41e-11 | 21 |
regional part of cerebral cortex | 4.14e-09 | 17 |
anatomical conduit | 7.96e-08 | 122 |
tube | 1.76e-07 | 114 |