FFCP PHASE1:Mm9::chr19:5797288..5797301,-: Difference between revisions
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{{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=438|UniProt=|association_with_transcript=162bp_to_ENSMUST00000173314_5end|description=CAGE_peak_4_at_ENSMUST00000173314_5end|id=chr19:5797288..5797301,-|ontology_enrichment_celltype=CL:0000117!2.25e-13!23;CL:0000337!2.25e-13!23;CL:0002319!3.18e-13!43;CL:0000221!1.50e-12!44;CL:0000133!1.50e-12!44;CL:0000540!2.37e-12!33;CL:0000047!2.37e-12!33;CL:0000031!2.37e-12!33;CL:0000404!2.37e-12!33;CL:0000055!8.90e-12!50;CL:0000393!1.71e-11!39;CL:0000211!1.71e-11!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.24e-25,23;CL:0000337,3.24e-25,23;CL:0000540,1.28e-19,33;CL:0000047,1.28e-19,33;CL:0000031,1.28e-19,33;CL:0000404,1.28e-19,33;CL:0002319,5.02e-19,43;CL:0000221,2.29e-18,44;CL:0000133,2.29e-18,44;CL:0000393,1.49e-16,39;CL:0000211,1.49e-16,39;CL:0002321,8.23e-09,70;CL:0002609,1.81e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.19e-15!73;UBERON:0005743!5.19e-15!73;UBERON:0004121!7.60e-15!102;UBERON:0000924!7.60e-15!102;UBERON:0006601!7.60e-15!102;UBERON:0000073!1.25e-14!75;UBERON:0001016!1.25e-14!75;UBERON:0002020!2.25e-13!34;UBERON:0002346!1.14e-11!71;UBERON:0003075!1.14e-11!71;UBERON:0007284!1.14e-11!71;UBERON:0000025!3.93e-11!114;UBERON:0001049!6.86e-11!52;UBERON:0005068!6.86e-11!52;UBERON:0006241!6.86e-11!52;UBERON:0007135!6.86e-11!52;UBERON:0000033!1.22e-10!63;UBERON:0002791!1.31e-10!29;UBERON:0003528!1.31e-10!29;UBERON:0001893!1.31e-10!29;UBERON:0000955!2.81e-10!50;UBERON:0006238!2.81e-10!50;UBERON:0004111!3.90e-10!122;UBERON:0002616!5.13e-10!49;UBERON:0000956!2.82e-09!21;UBERON:0001869!2.82e-09!21;UBERON:0000203!2.82e-09!21;UBERON:0003056!8.75e-09!49;UBERON:0003080!8.26e-08!40;UBERON:0002780!1.13e-07!39;UBERON:0001890!1.13e-07!39;UBERON:0006240!1.13e-07!39;UBERON:0002619!1.80e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.80e-18,34;UBERON:0001017,2.98e-14,73;UBERON:0000073,7.62e-14,54;UBERON:0001016,1.46e-13,75;UBERON:0003528,5.25e-13,29;UBERON:0002791,5.25e-13,29;UBERON:0001893,5.25e-13,29;UBERON:0004121,7.47e-13,95;UBERON:0000924,7.47e-13,95;UBERON:0006601,7.47e-13,95;UBERON:0002346,3.67e-11,64;UBERON:0003075,3.67e-11,64;UBERON:0007284,3.67e-11,64;UBERON:0001049,9.73e-11,52;UBERON:0005068,9.73e-11,52;UBERON:0006241,9.73e-11,52;UBERON:0007135,9.73e-11,52;UBERON:0000956,3.93e-10,21;UBERON:0001869,3.93e-10,21;UBERON:0000203,3.93e-10,21;UBERON:0010371,1.86e-09,73;UBERON:0010314,6.73e-09,92;UBERON:0003056,2.91e-08,49;UBERON:0002780,4.30e-08,39;UBERON:0001890,4.30e-08,39;UBERON:0006240,4.30e-08,39;UBERON:0002619,7.18e-08,17;UBERON:0000025,9.06e-08,114;UBERON:0003080,9.57e-08,40;UBERON:0002616,1.35e-07,46;UBERON:0000955,2.66e-07,47;UBERON:0006238,2.66e-07,47;UBERON:0004111,4.86e-07,122|phase1_expression=0.160148847104794,0.348975407639361,0,0.30246421130683,0.500895729946347,0.33575854382378,0.233612640595526,0,0.140788722151667,0,0.171217968225505,0,0.171200729931206,0.174840804837995,0.333109761815663,0.202475267389826,0,0.315462165358238,0.137114433605739,0.84877930359606,0.255129870453209,0,0.261199789138935,0.159992422793407,0.22940928106717,1.72269589234506,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0.971020706062307,0.251793635951155,0.304130793658544,1.28482726513177,1.56478268869608,0.872100625521786,2.63623419281366,5.63846707315422,4.61955191363696,0,0.167782606057736,0.725362142011344,0.336093799142464,0.771778308107841,0.286533439938757,0.515672092277442,3.64169629547276,3.70293685490423,2.53532561402472,0.677689064138264,0,0.449949858640699,0,0,0.599200221036809,0.768436610643109,9.43575472007147,4.18518408828241,3.78584930432488,1.14260393761521,1.98781686856452,2.69479758272899,5.94241920313065,8.27296907949019,41.8440347797677,36.7739533685341,45.7747469103606,6.98997324970027,6.86157327018072,6.25096044668112,5.30447698102624,0,2.29197371665215,50.9707452869445,16.5151149726959,7.26957838718672,0.681535739998656,0.151143120213571,0.579728977403356,0,0.679971333707751,0,0.649776417447669,0,0.140444420131752,0.170430322578058,0,0.35333957451034,0.14084341977668,0,0,0,0.865964164044856,0,0.505524445014783,0,0.258937883647172,0.890652834388949,0.173485326766136,0.304465478312141,0.230615497256059,0.60289056221049,0.705532242814229,1.0053327306374,0.741584903203122,0.144599356919912,0,0.647067399789637,0.662524555381181,0,0,0.585561594023094,1.67557365450764,0,0.11981512450592,0,0.381210681219194,0.748953197024114,0.457500602818626,0.376963056338593,0.695297280769106,1.27857728665165,0.41557608911912,0.486723789203273,0.611036183101898,0.373220911830279,0.252722758433675,0.841767423545896,0.390361328888111,0,0.540186389416048,1.35634336052144,1.02054748726992,1.5373646434182,0.749613796477831,2.32833033665114,0,0.189106080167819,0.351902248327898,0.219195732427575,1.39023624612799,0.348252166522167,0.61734640922383,0.59710280045548,0,0,0,0.207125772535502,0.234526059981096,0.720248245844059,0.23674473558521,0.590292695242212,0.61706845154951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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=438 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=162bp_to_ENSMUST00000173314_5end | |||
|cluster_id=chr19:5797288..5797301,- | |||
|description=CAGE_peak_4_at_ENSMUST00000173314_5end | |||
|id=chr19:5797288..5797301,- | |||
|ontology_enrichment_celltype=CL:0000117!2.25e-13!23;CL:0000337!2.25e-13!23;CL:0002319!3.18e-13!43;CL:0000221!1.50e-12!44;CL:0000133!1.50e-12!44;CL:0000540!2.37e-12!33;CL:0000047!2.37e-12!33;CL:0000031!2.37e-12!33;CL:0000404!2.37e-12!33;CL:0000055!8.90e-12!50;CL:0000393!1.71e-11!39;CL:0000211!1.71e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.24e-25,23;CL:0000337,3.24e-25,23;CL:0000540,1.28e-19,33;CL:0000047,1.28e-19,33;CL:0000031,1.28e-19,33;CL:0000404,1.28e-19,33;CL:0002319,5.02e-19,43;CL:0000221,2.29e-18,44;CL:0000133,2.29e-18,44;CL:0000393,1.49e-16,39;CL:0000211,1.49e-16,39;CL:0002321,8.23e-09,70;CL:0002609,1.81e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.19e-15!73;UBERON:0005743!5.19e-15!73;UBERON:0004121!7.60e-15!102;UBERON:0000924!7.60e-15!102;UBERON:0006601!7.60e-15!102;UBERON:0000073!1.25e-14!75;UBERON:0001016!1.25e-14!75;UBERON:0002020!2.25e-13!34;UBERON:0002346!1.14e-11!71;UBERON:0003075!1.14e-11!71;UBERON:0007284!1.14e-11!71;UBERON:0000025!3.93e-11!114;UBERON:0001049!6.86e-11!52;UBERON:0005068!6.86e-11!52;UBERON:0006241!6.86e-11!52;UBERON:0007135!6.86e-11!52;UBERON:0000033!1.22e-10!63;UBERON:0002791!1.31e-10!29;UBERON:0003528!1.31e-10!29;UBERON:0001893!1.31e-10!29;UBERON:0000955!2.81e-10!50;UBERON:0006238!2.81e-10!50;UBERON:0004111!3.90e-10!122;UBERON:0002616!5.13e-10!49;UBERON:0000956!2.82e-09!21;UBERON:0001869!2.82e-09!21;UBERON:0000203!2.82e-09!21;UBERON:0003056!8.75e-09!49;UBERON:0003080!8.26e-08!40;UBERON:0002780!1.13e-07!39;UBERON:0001890!1.13e-07!39;UBERON:0006240!1.13e-07!39;UBERON:0002619!1.80e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.80e-18,34;UBERON:0001017,2.98e-14,73;UBERON:0000073,7.62e-14,54;UBERON:0001016,1.46e-13,75;UBERON:0003528,5.25e-13,29;UBERON:0002791,5.25e-13,29;UBERON:0001893,5.25e-13,29;UBERON:0004121,7.47e-13,95;UBERON:0000924,7.47e-13,95;UBERON:0006601,7.47e-13,95;UBERON:0002346,3.67e-11,64;UBERON:0003075,3.67e-11,64;UBERON:0007284,3.67e-11,64;UBERON:0001049,9.73e-11,52;UBERON:0005068,9.73e-11,52;UBERON:0006241,9.73e-11,52;UBERON:0007135,9.73e-11,52;UBERON:0000956,3.93e-10,21;UBERON:0001869,3.93e-10,21;UBERON:0000203,3.93e-10,21;UBERON:0010371,1.86e-09,73;UBERON:0010314,6.73e-09,92;UBERON:0003056,2.91e-08,49;UBERON:0002780,4.30e-08,39;UBERON:0001890,4.30e-08,39;UBERON:0006240,4.30e-08,39;UBERON:0002619,7.18e-08,17;UBERON:0000025,9.06e-08,114;UBERON:0003080,9.57e-08,40;UBERON:0002616,1.35e-07,46;UBERON:0000955,2.66e-07,47;UBERON:0006238,2.66e-07,47;UBERON:0004111,4.86e-07,122 | |||
|phase1_expression=0.160148847104794,0.348975407639361,0,0.30246421130683,0.500895729946347,0.33575854382378,0.233612640595526,0,0.140788722151667,0,0.171217968225505,0,0.171200729931206,0.174840804837995,0.333109761815663,0.202475267389826,0,0.315462165358238,0.137114433605739,0.84877930359606,0.255129870453209,0,0.261199789138935,0.159992422793407,0.22940928106717,1.72269589234506,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0.971020706062307,0.251793635951155,0.304130793658544,1.28482726513177,1.56478268869608,0.872100625521786,2.63623419281366,5.63846707315422,4.61955191363696,0,0.167782606057736,0.725362142011344,0.336093799142464,0.771778308107841,0.286533439938757,0.515672092277442,3.64169629547276,3.70293685490423,2.53532561402472,0.677689064138264,0,0.449949858640699,0,0,0.599200221036809,0.768436610643109,9.43575472007147,4.18518408828241,3.78584930432488,1.14260393761521,1.98781686856452,2.69479758272899,5.94241920313065,8.27296907949019,41.8440347797677,36.7739533685341,45.7747469103606,6.98997324970027,6.86157327018072,6.25096044668112,5.30447698102624,0,2.29197371665215,50.9707452869445,16.5151149726959,7.26957838718672,0.681535739998656,0.151143120213571,0.579728977403356,0,0.679971333707751,0,0.649776417447669,0,0.140444420131752,0.170430322578058,0,0.35333957451034,0.14084341977668,0,0,0,0.865964164044856,0,0.505524445014783,0,0.258937883647172,0.890652834388949,0.173485326766136,0.304465478312141,0.230615497256059,0.60289056221049,0.705532242814229,1.0053327306374,0.741584903203122,0.144599356919912,0,0.647067399789637,0.662524555381181,0,0,0.585561594023094,1.67557365450764,0,0.11981512450592,0,0.381210681219194,0.748953197024114,0.457500602818626,0.376963056338593,0.695297280769106,1.27857728665165,0.41557608911912,0.486723789203273,0.611036183101898,0.373220911830279,0.252722758433675,0.841767423545896,0.390361328888111,0,0.540186389416048,1.35634336052144,1.02054748726992,1.5373646434182,0.749613796477831,2.32833033665114,0,0.189106080167819,0.351902248327898,0.219195732427575,1.39023624612799,0.348252166522167,0.61734640922383,0.59710280045548,0,0,0,0.207125772535502,0.234526059981096,0.720248245844059,0.23674473558521,0.590292695242212,0.617068451549513,2.32533944750408,0.536546802799238,2.56883753207773,2.13927804887525,1.97000956894914,0.891756905004413,0.730999937126662,2.19550115291051,0.134206418760372,0.841159794256509,0.514523061896422,0,0.264450566663544,0,0.928946687441754,0.128867461322093,0.201683524623343,0,0.190225626112559,0.474529061544512,0.329397909448022,0.502670417600539,0,0.19496408711912,1.79763881730844,1.94524244887225,0.398282546508734,0,0.228497025219458,0,1.4255592949172,1.55161989734101,1.1221731182451,1.39120381673366,1.77132177575523,2.19798218977925,1.23397163921801,0,0,0.196558995113203,0.224862112384854,0.202860121388503,0.482354319504834,0.25462585178142,0.287696137450811,0.648540907100142,0.549122826376163,17.2521847832825,0.372140947668503,0.624075346229121,0.757736633841335,0.538192240565737,0,0.554259570499814,0.189491411770485,0.162964976442026,0.339490171550376,0.938760993154008,1.00503754465089,1.90434912708811,1.56106918286239,0.630540576424764,2.43611158613652,0.797273843287435,2.29408640602033,2.59027472798843,1.44649058581512,0,1.63171705145613,1.96705709207614,0.275936746304732,0.642202359951168,0.117211686592203,0,0.757412781613119,0.94652465824877,0,1.29254038639679,0.716906393857656,0.445597348164788,0.566153061577665,0.809621403349789,1.75353514746787,1.18586333383957,0.963963949265421,0.567760340833074,0.35613120733451,0.162886959353576,1.15479086080775,0,0,0.302323556964751,0,0,0.307435147943927,0,0.363533729477506,0.356497378384721,0.316036757935816,1.05418608574999,0,0,0.540183282093931,0.129358683782755,0.214337035031592,0.354680467284547,0.356737635204141,0.658196082408484,0.304464949114599,0.469343416127421,0.21183207086382,0.220528398054962,0.32977250588296,0.484393280087717,0.180938774784468,0.477489376012546,0,1.45740418314925,0.741701208042039,0.170870880797853,0,0.370389054739423,0.565105371014073,0.27338845544205,0.457556346413045,0.169978429993855,0,0,0,0.316335993581135,0.609958401380546,0.648032044930808,0.209088296014469,1.31017538247707,1.48350781023303,0.247960367176008,0.785267825952089,0.777689839750757,1.24267862617385,0,0.149516546043979,0,0.583353565032143,0.516639293910924,1.18269287843545,0.58678619322877,0.781226309063701,0.419437377702843,0.724752362478018,0.288030006257865,0,0,0.102710957164827,0.25984164595559,0.179026695667481,0.198681354781265,0.360586348559907,0.295379054349154,0.100966449948148,0.228620419965,0.907435666231565,0.877120926657772,0.865906574762965,1.16876902181569,0.453460767230423,0.443971906748129,0.0897138566094757,0.167884616364078,0.19318959403219,1.12609485270709,0.183151624267265,0.857473516316263,0,3.3885110557024,0.920650473014354,1.14579102687879,2.23409137046794,2.74033007908257,0.755393897389701,0.675022500231806,1.35096360967266,1.812569635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| |||
|short_description=p4@ENSMUST00000173314 | |||
}} |
Latest revision as of 10:00, 4 August 2015
Short description: | p4@ENSMUST00000173314 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_ENSMUST00000173314_5end |
Coexpression cluster: | MCL_coexpression_mm9:438 |
Association with transcript: | 162bp_to_ENSMUST00000173314_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.24e-25 | 23 |
neuroblast (sensu Vertebrata) | 3.24e-25 | 23 |
neuron | 1.28e-19 | 33 |
neuronal stem cell | 1.28e-19 | 33 |
neuroblast | 1.28e-19 | 33 |
electrically signaling cell | 1.28e-19 | 33 |
neural cell | 5.02e-19 | 43 |
ectodermal cell | 2.29e-18 | 44 |
neurectodermal cell | 2.29e-18 | 44 |
electrically responsive cell | 1.49e-16 | 39 |
electrically active cell | 1.49e-16 | 39 |
embryonic cell | 8.23e-09 | 70 |
neuron of cerebral cortex | 1.81e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
gray matter | 8.80e-18 | 34 |
central nervous system | 2.98e-14 | 73 |
regional part of nervous system | 7.62e-14 | 54 |
nervous system | 1.46e-13 | 75 |
brain grey matter | 5.25e-13 | 29 |
regional part of telencephalon | 5.25e-13 | 29 |
telencephalon | 5.25e-13 | 29 |
ectoderm-derived structure | 7.47e-13 | 95 |
ectoderm | 7.47e-13 | 95 |
presumptive ectoderm | 7.47e-13 | 95 |
neurectoderm | 3.67e-11 | 64 |
neural plate | 3.67e-11 | 64 |
presumptive neural plate | 3.67e-11 | 64 |
neural tube | 9.73e-11 | 52 |
neural rod | 9.73e-11 | 52 |
future spinal cord | 9.73e-11 | 52 |
neural keel | 9.73e-11 | 52 |
cerebral cortex | 3.93e-10 | 21 |
cerebral hemisphere | 3.93e-10 | 21 |
pallium | 3.93e-10 | 21 |
ecto-epithelium | 1.86e-09 | 73 |
structure with developmental contribution from neural crest | 6.73e-09 | 92 |
pre-chordal neural plate | 2.91e-08 | 49 |
regional part of forebrain | 4.30e-08 | 39 |
forebrain | 4.30e-08 | 39 |
future forebrain | 4.30e-08 | 39 |
regional part of cerebral cortex | 7.18e-08 | 17 |
tube | 9.06e-08 | 114 |
anterior neural tube | 9.57e-08 | 40 |
regional part of brain | 1.35e-07 | 46 |
brain | 2.66e-07 | 47 |
future brain | 2.66e-07 | 47 |
anatomical conduit | 4.86e-07 | 122 |